IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
671	 54.30	0	645178..646536	+	452	15837276	-	XF0674	-	hypothetical protein
672	 53.56	0	646650..647702	+	350	15837277	-	XF0675	-	hypothetical protein
673	 55.42	0	647732..648691	+	319	77747513	-	XF0676	-	DNA polymerase III subunit delta'
674	 52.10	0	648688..649044	+	118	15837279	-	XF0677	-	type 4 fimbriae assembly protein
675	 53.61	0	649115..650278	-	387	15837280	-	XF0678	-	phage-related integrase
676	 46.84	0	650441..650677	-	78	15837281	-	XF0679	-	hypothetical protein
677	 57.08	0	650674..652092	-	472	15837282	-	XF0680	-	hypothetical protein
678	 54.29	0	652089..652589	-	166	15837283	-	XF0681	-	hypothetical protein
679	 59.86	+1	652586..652864	-	92	15837284	-	XF0682	-	hypothetical protein
680	 63.09	+1	652861..655041	-	726	15837285	-	XF0683	-	phage-related DNA polymerase
681	 55.75	0	655043..656554	-	503	15837286	-	XF0684	-	hypothetical protein
682	 58.38	0	656627..657193	-	188	15837287	-	XF0685	-	hypothetical protein
683	 60.88	+1	657193..658470	-	425	15837288	-	XF0686	-	hypothetical protein
684	 51.56	0	658467..658691	-	74	15837289	-	XF0687	-	hypothetical protein
685	 53.12	0	658964..659155	-	63	15837290	-	XF0688	-	hypothetical protein
686	 50.55	0	659152..659424	-	90	15837291	-	XF0689	-	hypothetical protein
687	 52.31	0	659456..659650	-	64	15837292	-	XF0690	-	hypothetical protein
688	 48.51	0	659647..660048	-	133	15837293	-	XF0691	-	hypothetical protein
689	 46.67	0	660048..660437	-	129	15837294	-	XF0692	-	hypothetical protein
690	 53.05	0	660434..660991	-	185	15837295	-	XF0693	-	hypothetical protein
691	 57.41	0	660982..661143	+	53	15837296	-	XF0694	-	hypothetical protein
692	 57.09	0	661281..661541	+	86	15837297	-	XF0695	-	hypothetical protein
693	 50.60	0	661716..662381	-	221	15837298	-	XF0696	-	phage-related repressor protein
694	 57.78	0	662446..662670	+	74	15837299	-	XF0697	-	hypothetical protein
695	 50.90	0	662844..663065	-	73	15837300	-	XF0698	-	hypothetical protein
696	 51.23	0	663047..663208	-	53	15837301	-	XF0699	-	hypothetical protein
697	 48.69	0	663335..663829	-	164	15837302	-	XF0700	-	hypothetical protein
698	 52.94	0	663845..663997	+	50	15837303	-	XF0701	-	hypothetical protein
699	 46.59	0	663994..664242	+	82	15837304	-	XF0702	-	hypothetical protein
700	 59.50	+1	664312..664674	-	120	15837305	-	XF0703	-	hypothetical protein
701	 56.24	0	664858..665490	+	210	15837306	-	XF0704	-	hypothetical protein
702	 57.57	0	665624..668161	+	845	15837307	-	XF0705	-	hypothetical protein
703	 62.63	+1	668704..668901	+	65	15837308	-	XF0706	-	hypothetical protein
704	 54.34	0	669678..670172	+	164	15837309	-	XF0707	-	hypothetical protein
705	 54.81	0	670183..670494	+	103	15837310	-	XF0708	-	hypothetical protein
706	 57.71	0	670466..670945	+	159	15837311	-	XF0709	-	hypothetical protein
707	 55.67	0	671302..671883	+	193	15837312	-	XF0710	-	hypothetical protein
708	 58.52	+1	672086..673828	+	580	15837313	-	XF0711	-	phage-related terminase large subunit
709	 58.65	+1	673832..674380	+	182	15837314	-	XF0712	-	hypothetical protein
710	 57.41	0	674377..675975	+	532	15837315	-	XF0713	-	phage-related portal protein
711	 59.86	+1	675959..677839	+	626	15837316	-	XF0714	-	hypothetical protein
712	 61.69	+1	677857..678117	+	86	15837317	-	XF0715	-	hypothetical protein
713	 56.88	0	678114..678440	+	108	15837318	-	XF0716	-	hypothetical protein
714	 59.58	+1	678437..678958	+	173	15837319	-	XF0717	-	hypothetical protein
715	 63.77	+1	679063..679476	+	137	15837320	-	XF0718	-	hypothetical protein
716	 64.80	+2	679473..680060	+	195	15837321	-	XF0719	-	phage-related baseplate assembly protein
717	 54.35	0	680065..680340	-	91	15837322	-	XF0720	-	proteic killer active protein
718	 47.48	0	680351..680668	-	105	15837323	-	XF0721	-	proteic killer suppression protein
719	 55.56	0	680747..680899	-	50	15837324	-	XF0722	-	hypothetical protein
720	 65.58	+2	680903..681178	+	91	15837325	-	XF0723	-	phage-related baseplate assembly protein
721	 59.28	+1	681178..682071	+	297	15837326	-	XF0724	-	phage-related baseplate assembly protein
722	 60.04	+1	682064..682621	+	185	15837327	-	XF0725	-	phage-related tail protein
723	 57.79	0	683072..684220	+	382	15837328	-	XF0726	-	hypothetical protein
724	 57.93	0	684273..685463	+	396	15837329	-	XF0727	-	phage tail sheath protein
725	 53.33	0	685463..685972	+	169	15837330	-	XF0728	-	phage tail tube protein
726	 54.86	0	685975..686262	+	95	15837331	-	XF0729	-	hypothetical protein
727	 58.33	0	686389..688608	+	739	15837332	-	XF0730	-	phage-related tail protein
728	 59.42	+1	688605..689087	+	160	15837333	-	XF0731	-	phage-related tail protein
729	 61.19	+1	689084..689302	+	72	15837334	-	XF0732	-	phage-related tail protein
730	 58.91	+1	689293..690375	+	360	15837335	-	XF0733	-	phage-related tail protein
731	 62.02	+1	690409..690537	-	42	15837336	-	XF0734	-	hypothetical protein
732	 44.00	-1	690919..691293	-	124	15837337	-	XF0735	-	hypothetical protein
733	 51.47	0	691467..693374	+	635	15837338	-	XF0736	-	threonyl-tRNA synthetase
734	 49.58	0	693490..693969	+	159	15837339	infC	XF0737	-	translation initiation factor IF-3
735	 42.71	-1	694154..694249	+	31	15837340	-	XF0738	-	hypothetical protein
736	 52.02	0	694230..694427	+	65	15837341	rpmI	XF0739	-	50S ribosomal protein L35
737	 49.44	0	694438..694797	+	119	15837342	rplT	XF0740	-	50S ribosomal protein L20
738	 50.60	0	695069..696070	+	333	15837343	pheS	XF0741	-	phenylalanyl-tRNA synthetase subunit alpha
739	 54.69	0	696154..698532	+	792	15837344	pheT	XF0742	-	phenylalanyl-tRNA synthetase subunit beta
740	 46.67	0	698556..698855	+	99	15837345	ihfA	XF0743	-	integration host factor subunit alpha
741	 53.99	0	698830..699192	+	120	15837346	-	XF0744	-	hypothetical protein
742	 59.17	+1	699444..699563	+	39	15837347	-	XF0745	-	hypothetical protein
743	 53.99	0	699868..700143	+	91	15837348	-	XF0746	-	hypothetical protein
744	 53.96	0	700140..700871	-	243	15837349	-	XF0747	-	hypothetical protein
745	 55.68	0	700887..701942	+	351	15837350	-	XF0748	-	putative RNA 2'-O-ribose methyltransferase
746	 50.37	0	702728..703132	-	134	15837351	-	XF0749	-	virulence regulator
747	 43.43	-1	703259..703357	-	32	15837352	-	XF0750	-	hypothetical protein
748	 52.89	0	703411..704499	-	362	15837353	-	XF0751	-	ribonuclease D
749	 58.97	+1	704814..706424	+	536	77747514	-	XF0752	-	hypothetical protein
750	 55.91	0	706483..706668	-	61	15837355	-	XF0753	-	hypothetical protein
751	 55.94	0	706550..707407	+	285	77747515	-	XF0754	-	virulence protein
752	 59.40	+1	707473..708807	-	444	15837357	xseA	XF0755	-	exodeoxyribonuclease VII large subunit
753	 55.95	0	708799..709050	+	83	15837358	-	XF0756	-	hypothetical protein
754	 62.64	+1	709257..710747	+	496	77747516	-	XF0757	-	hypothetical protein
755	 57.87	0	710744..711232	+	162	15837360	-	XF0758	-	hypothetical protein
756	 57.96	0	711291..712910	+	539	15837361	-	XF0759	-	N-acetylmuramoyl-L-alanine amidase precursor
757	 58.55	+1	713046..714905	+	619	15837362	mutL	XF0760	-	DNA mismatch repair protein
758	 55.77	0	714950..715867	+	305	15837363	-	XF0761	-	hypothetical protein
759	 52.26	0	716136..716711	-	191	15837364	dcd	XF0762	-	deoxycytidine triphosphate deaminase
760	 46.94	0	716788..717081	-	97	15837365	-	XF0763	-	hypothetical protein
761	 56.10	0	717284..718078	-	264	15837366	-	XF0764	-	membrane protein
762	 55.10	0	718066..718506	-	146	15837367	-	XF0765	-	hypothetical protein
763	 58.09	0	718503..718910	-	135	15837368	-	XF0766	-	hypothetical protein
764	 55.36	0	718907..719251	-	114	15837369	-	XF0767	-	ArsR family transcriptional regulator
765	 57.33	0	719245..720540	-	431	15837370	-	XF0768	-	hypothetical protein
766	 54.88	0	720966..721856	-	296	77747517	-	XF0769	-	pteridine-dependent deoxygenase
767	 51.82	0	721873..722283	-	136	15837372	-	XF0770	-	hypothetical protein
768	 51.11	0	722310..722579	+	89	77747518	-	XF0771	-	acyl carrier protein
769	 55.60	0	722554..723294	+	246	15837374	-	XF0772	-	hypothetical protein
770	 50.48	0	723417..723521	-	34	15837375	-	XF0773	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.