IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
616	 49.56	0	597292..597630	+	112	15837221	-	XF0619	-	periplasmic divalent cation tolerance protein
617	 52.31	0	597627..599903	+	758	15837222	-	XF0620	-	c-type cytochrome biogenesis protein (copper tolerance)
618	 54.42	0	600068..600892	-	274	15837223	-	XF0621	-	phosphomethylpyrimidine kinase
619	 51.85	0	600874..601089	-	71	15837224	-	XF0622	-	hypothetical protein
620	 47.75	0	601839..602171	+	110	15837225	-	XF0623	-	hypothetical protein
621	 54.89	0	602559..603407	+	282	15837226	aroE	XF0624	-	shikimate 5-dehydrogenase
622	 47.57	0	603402..603668	-	88	15837227	-	XF0625	-	hypothetical protein
623	 55.56	0	603792..604403	-	203	15837228	-	XF0626	-	hypothetical protein
624	 43.65	-1	604465..604716	-	83	15837229	-	XF0627	-	hypothetical protein
625	 48.89	0	604931..605290	-	119	15837230	-	XF0628	-	hypothetical protein
626	 53.59	0	605696..606406	-	236	15837231	-	XF0629	-	hypothetical protein
627	 54.72	0	606421..606897	-	158	15837232	-	XF0630	-	hypothetical protein
628	 58.21	0	607242..608483	+	413	15837233	-	XF0631	-	phage-related integrase
629	 58.84	+1	608597..608941	+	114	15837234	-	XF0632	-	hypothetical protein
630	 60.56	+1	609069..610427	+	452	15837235	-	XF0633	-	hypothetical protein
631	 64.20	+1	610624..611109	-	161	15837236	-	XF0634	-	hypothetical protein
632	 60.17	+1	611355..612077	+	240	15837237	-	XF0635	-	hypothetical protein
633	 62.39	+1	612114..612581	+	155	15837238	-	XF0636	-	hypothetical protein
634	 59.15	+1	612578..612790	+	70	15837239	-	XF0637	-	hypothetical protein
635	 63.04	+1	612929..613534	-	201	15837240	-	XF0638	-	hypothetical protein
636	 67.15	+2	613531..613737	-	68	15837241	-	XF0639	-	hypothetical protein
637	 57.39	0	613830..614681	-	283	15837242	-	XF0640	-	hypothetical protein
638	 56.69	0	614678..615820	-	380	15837243	-	XF0641	-	DNA methyltransferase
639	 47.85	0	616284..616469	+	61	15837244	-	XF0642	-	hypothetical protein
640	 52.38	0	616520..616708	-	62	15837245	-	XF0643	-	hypothetical protein
641	 51.95	0	616918..617610	-	230	15837246	-	XF0644	-	peptidyl-prolyl cis-trans isomerase
642	 43.09	-1	617813..617935	+	40	15837247	-	XF0645	-	hypothetical protein
643	 57.64	0	618171..618602	+	143	15837248	-	XF0646	-	hypothetical protein
644	 51.29	0	618629..619285	+	218	15837249	-	XF0647	-	endonuclease III
645	 48.65	0	619405..619626	+	73	15837250	-	XF0648	-	hypothetical protein
646	 51.85	0	619605..620279	-	224	15837251	-	XF0649	-	hypothetical protein
647	 49.57	0	620313..620429	+	38	15837252	-	XF0650	-	hypothetical protein
648	 54.29	0	620725..622017	-	430	15837253	-	XF0651	-	transport protein
649	 53.75	0	622038..622517	-	159	15837254	-	XF0652	-	peptidyl-prolyl cis-trans isomerase
650	 56.18	0	622544..623182	+	212	15837255	-	XF0653	-	hypothetical protein
651	 52.94	0	623228..624094	+	288	15837256	-	XF0654	-	hypothetical protein
652	 52.11	0	624428..624688	-	86	15837257	-	XF0655	-	hypothetical protein
653	 54.79	0	624833..626146	-	437	15837258	-	XF0656	-	glutamate symport protein
654	 58.35	0	626294..627988	+	564	77747510	-	XF0657	-	alkaline phosphatase
655	 57.47	0	628192..628365	-	57	15837260	-	XF0658	-	hypothetical protein
656	 62.56	+1	628432..629745	+	437	15837261	-	XF0659	-	cell cycle protein
657	 56.55	0	629777..630043	+	88	15837262	-	XF0660	-	exodeoxyribonuclease VII small subunit
658	 59.02	+1	630040..630915	+	291	15837263	-	XF0661	-	geranyltranstransferase (farnesyl-diphosphate synthase)
659	 58.46	+1	631084..631278	-	64	15837264	-	XF0662	-	hypothetical protein
660	 38.57	-2	631395..631910	+	171	15837265	-	XF0663	-	hypothetical protein
661	 36.36	-2	632085..632546	+	153	15837266	-	XF0664	-	hypothetical protein
662	 55.95	0	632771..633022	+	83	15837267	-	XF0665	-	hypothetical protein
663	 37.18	-2	633032..633577	+	181	15837268	-	XF0666	-	hypothetical protein
664	 36.62	-2	633735..634160	+	141	15837269	-	XF0667	-	hypothetical protein
665	 56.62	0	634160..637783	+	1207	77747511	-	XF0668	-	hemolysin-type calcium binding protein
666	 56.41	0	638190..640880	-	896	77747512	aceE	XF0669	-	pyruvate dehydrogenase subunit E1
667	 55.87	0	641367..642320	+	317	15837272	-	XF0670	-	acyl-carrier-protein S-malonyltransferase
668	 53.36	0	642421..643164	+	247	15837273	fabG	XF0671	-	3-ketoacyl-(acyl-carrier-protein) reductase
669	 47.67	0	643311..643568	+	85	15837274	-	XF0672	-	hypothetical protein
670	 51.62	0	643726..644961	+	411	15837275	-	XF0673	-	3-oxoacyl-(acyl carrier protein) synthase II
671	 54.30	0	645178..646536	+	452	15837276	-	XF0674	-	hypothetical protein
672	 53.56	0	646650..647702	+	350	15837277	-	XF0675	-	hypothetical protein
673	 55.42	0	647732..648691	+	319	77747513	-	XF0676	-	DNA polymerase III subunit delta'
674	 52.10	0	648688..649044	+	118	15837279	-	XF0677	-	type 4 fimbriae assembly protein
675	 53.61	0	649115..650278	-	387	15837280	-	XF0678	-	phage-related integrase
676	 46.84	0	650441..650677	-	78	15837281	-	XF0679	-	hypothetical protein
677	 57.08	0	650674..652092	-	472	15837282	-	XF0680	-	hypothetical protein
678	 54.29	0	652089..652589	-	166	15837283	-	XF0681	-	hypothetical protein
679	 59.86	+1	652586..652864	-	92	15837284	-	XF0682	-	hypothetical protein
680	 63.09	+1	652861..655041	-	726	15837285	-	XF0683	-	phage-related DNA polymerase
681	 55.75	0	655043..656554	-	503	15837286	-	XF0684	-	hypothetical protein
682	 58.38	0	656627..657193	-	188	15837287	-	XF0685	-	hypothetical protein
683	 60.88	+1	657193..658470	-	425	15837288	-	XF0686	-	hypothetical protein
684	 51.56	0	658467..658691	-	74	15837289	-	XF0687	-	hypothetical protein
685	 53.12	0	658964..659155	-	63	15837290	-	XF0688	-	hypothetical protein
686	 50.55	0	659152..659424	-	90	15837291	-	XF0689	-	hypothetical protein
687	 52.31	0	659456..659650	-	64	15837292	-	XF0690	-	hypothetical protein
688	 48.51	0	659647..660048	-	133	15837293	-	XF0691	-	hypothetical protein
689	 46.67	0	660048..660437	-	129	15837294	-	XF0692	-	hypothetical protein
690	 53.05	0	660434..660991	-	185	15837295	-	XF0693	-	hypothetical protein
691	 57.41	0	660982..661143	+	53	15837296	-	XF0694	-	hypothetical protein
692	 57.09	0	661281..661541	+	86	15837297	-	XF0695	-	hypothetical protein
693	 50.60	0	661716..662381	-	221	15837298	-	XF0696	-	phage-related repressor protein
694	 57.78	0	662446..662670	+	74	15837299	-	XF0697	-	hypothetical protein
695	 50.90	0	662844..663065	-	73	15837300	-	XF0698	-	hypothetical protein
696	 51.23	0	663047..663208	-	53	15837301	-	XF0699	-	hypothetical protein
697	 48.69	0	663335..663829	-	164	15837302	-	XF0700	-	hypothetical protein
698	 52.94	0	663845..663997	+	50	15837303	-	XF0701	-	hypothetical protein
699	 46.59	0	663994..664242	+	82	15837304	-	XF0702	-	hypothetical protein
700	 59.50	+1	664312..664674	-	120	15837305	-	XF0703	-	hypothetical protein
701	 56.24	0	664858..665490	+	210	15837306	-	XF0704	-	hypothetical protein
702	 57.57	0	665624..668161	+	845	15837307	-	XF0705	-	hypothetical protein
703	 62.63	+1	668704..668901	+	65	15837308	-	XF0706	-	hypothetical protein
704	 54.34	0	669678..670172	+	164	15837309	-	XF0707	-	hypothetical protein
705	 54.81	0	670183..670494	+	103	15837310	-	XF0708	-	hypothetical protein
706	 57.71	0	670466..670945	+	159	15837311	-	XF0709	-	hypothetical protein
707	 55.67	0	671302..671883	+	193	15837312	-	XF0710	-	hypothetical protein
708	 58.52	+1	672086..673828	+	580	15837313	-	XF0711	-	phage-related terminase large subunit
709	 58.65	+1	673832..674380	+	182	15837314	-	XF0712	-	hypothetical protein
710	 57.41	0	674377..675975	+	532	15837315	-	XF0713	-	phage-related portal protein
711	 59.86	+1	675959..677839	+	626	15837316	-	XF0714	-	hypothetical protein
712	 61.69	+1	677857..678117	+	86	15837317	-	XF0715	-	hypothetical protein
713	 56.88	0	678114..678440	+	108	15837318	-	XF0716	-	hypothetical protein
714	 59.58	+1	678437..678958	+	173	15837319	-	XF0717	-	hypothetical protein
715	 63.77	+1	679063..679476	+	137	15837320	-	XF0718	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.