IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
14	 40.17	-1	13513..13629	-	38	15836619	-	XF0014	-	hypothetical protein
15	 52.22	0	13839..16226	+	795	15836620	-	XF0015	-	dipeptidyl-peptidase
16	 52.67	0	16281..16823	+	180	15836621	-	XF0016	-	hypothetical protein
17	 53.49	0	17042..17959	+	305	77747481	-	XF0017	-	coproporphyrinogen III oxidase
18	 46.01	0	18470..18682	-	70	15836623	-	XF0018	-	hypothetical protein
19	 41.83	-1	18746..18898	+	50	15836624	-	XF0019	-	hypothetical protein
20	 49.69	0	19083..19241	-	52	15836625	-	XF0020	-	hypothetical protein
21	 54.88	0	19395..19691	+	98	15836626	-	XF0021	-	hypothetical protein
22	 50.00	0	20230..20457	+	75	15836627	-	XF0022	-	hypothetical protein
23	 47.92	0	20458..20553	+	31	15836628	-	XF0023	-	hypothetical protein
24	 47.53	0	20654..20815	+	53	15836629	-	XF0024	-	hypothetical protein
25	 41.96	-1	20982..21236	+	84	15836630	-	XF0025	-	hypothetical protein
26	 51.05	0	21732..22826	-	364	77747482	-	XF0026	-	phospho-2-dehydro-3-deoxyheptonate aldolase
27	 43.92	-1	22847..23035	-	62	15836632	-	XF0027	-	hypothetical protein
28	 53.72	0	23999..24562	+	187	15836633	-	XF0028	-	pre-pilin like leader sequence
29	 50.31	0	24572..25048	+	158	15836634	-	XF0029	-	pre-pilin leader sequence
30	 50.47	0	25045..25995	+	316	15836635	-	XF0030	-	hypothetical protein
31	 49.66	0	25992..26579	+	195	15836636	-	XF0031	-	PilX protein
32	 53.61	0	26603..30295	+	1230	15836637	-	XF0032	-	PilY1 gene product
33	 51.19	0	30298..30717	+	139	15836638	-	XF0033	-	PilE protein
34	 54.29	0	31159..31893	-	244	15836639	-	XF0034	-	orotidine 5'-phosphate decarboxylase
35	 49.63	0	32677..32811	+	44	15836640	-	XF0035	-	hypothetical protein
36	 52.45	0	33018..34220	+	400	15836641	-	XF0036	-	aromatic amino acid aminotransferase
37	 48.92	0	34249..34434	+	61	15836642	-	XF0037	-	hypothetical protein
38	 53.21	0	34755..34910	-	51	15836643	-	XF0038	-	hypothetical protein
39	 45.93	-1	35095..35499	-	134	15836644	-	XF0039	-	large-conductance mechanosensitive channel
40	 47.46	0	35823..36176	-	117	15836645	-	XF0040	-	hypothetical protein
41	 49.04	0	36199..36459	+	86	15836646	-	XF0041	-	hypothetical protein
42	 53.60	0	36474..37736	+	420	15836647	-	XF0042	-	hypothetical protein
43	 56.58	0	37919..38800	+	293	15836648	-	XF0043	-	hypothetical protein
44	 54.26	0	39398..39937	+	179	15836649	-	XF0044	-	hypothetical protein
45	 55.08	0	40005..43586	+	1193	15836650	-	XF0045	-	transcription-repair coupling factor
46	 50.00	0	43591..43686	+	31	15836651	-	XF0046	-	hypothetical protein
47	 52.80	0	44209..44655	+	148	77747483	-	XF0047	-	3-dehydroquinate dehydratase
48	 54.12	0	44718..45203	+	161	15836653	-	XF0048	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
49	 53.73	0	45261..46628	+	455	161378180	-	XF0049	-	acetyl-CoA carboxylase biotin carboxylase subunit
50	 55.14	0	46805..48991	-	728	15836655	uvrD	XF0050	-	DNA-dependent helicase II
51	 47.54	0	49381..49746	-	121	15836656	-	XF0051	-	hypothetical protein
52	 37.63	-2	50226..50411	-	61	15836657	-	XF0052	-	hypothetical protein
53	 47.82	0	50551..51744	+	397	15836658	-	XF0053	-	nitric oxide dioxygenase
54	 39.57	-2	51758..52126	-	122	15836659	-	XF0054	-	hypothetical protein
55	 42.59	-1	52212..52319	+	35	15836660	-	XF0055	-	hypothetical protein
56	 37.36	-2	52453..52626	+	57	15836661	-	XF0056	-	hypothetical protein
57	 34.23	-2	52710..52820	+	36	15836662	-	XF0057	-	hypothetical protein
58	 46.34	0	53457..53579	-	40	15836663	-	XF0058	-	hypothetical protein
59	 46.79	0	53596..53907	+	103	15836664	-	XF0059	-	hypothetical protein
60	 51.85	0	53904..54686	+	260	15836665	-	XF0060	-	pyridoxal phosphate biosynthetic protein PdxJ
61	 44.72	-1	55178..56257	-	359	15836666	-	XF0061	-	transcriptional repressor
62	 39.45	-2	56232..56558	-	108	15836667	-	XF0062	-	hypothetical protein
63	 51.93	0	57328..58053	-	241	15836668	-	XF0063	-	competence protein F
64	 51.36	0	58103..59128	+	341	15836669	-	XF0064	-	biotin synthase
65	 44.12	-1	59182..59283	+	33	15836670	-	XF0065	-	hypothetical protein
66	 50.51	0	59387..60574	+	395	15836671	-	XF0066	-	hypothetical protein
67	 42.50	-1	61039..61278	+	79	15836672	-	XF0067	-	hypothetical protein
68	 52.99	0	61395..62396	-	333	15836673	ubiA	XF0068	-	4-hydroxybenzoate octaprenyltransferase
69	 46.31	0	62418..62810	-	130	15836674	-	XF0069	-	hypothetical protein
70	 45.91	-1	64213..64371	-	52	15836675	-	XF0070	-	hypothetical protein
71	 52.33	0	71808..72623	+	271	15836676	-	XF0071	-	formamidopyrimidine-DNA glycosylase
72	 47.11	0	72755..73603	-	282	15836677	-	XF0072	-	hypothetical protein
73	 48.81	0	73755..75059	+	434	15836678	-	XF0073	-	signal recognition particle protein
74	 46.94	0	75334..75627	+	97	15836679	-	XF0074	-	hypothetical protein
75	 55.22	0	75779..76582	+	267	15836680	-	XF0075	-	hypothetical protein
76	 40.48	-1	76738..76905	-	55	15836681	-	XF0076	-	hypothetical protein
77	 51.44	0	76892..77863	-	323	77747484	-	XF0077	-	fimbrial adhesin precursor
78	 50.97	0	78097..79077	-	326	77747485	-	XF0078	-	fimbrial adhesin precursor
79	 39.24	-2	79229..79465	+	78	15836684	-	XF0079	-	hypothetical protein
80	 49.95	0	79744..80706	-	320	15836685	-	XF0080	-	fimbrial adhesin precursor
81	 52.66	0	80781..83486	-	901	15836686	-	XF0081	-	outer membrane usher protein precursor
82	 49.31	0	83513..84313	-	266	15836687	-	XF0082	-	chaperone protein precursor
83	 52.25	0	84385..84939	-	184	15836688	-	XF0083	-	fimbrial subunit precursor
84	 37.50	-2	85353..85448	+	31	15836689	-	XF0084	-	hypothetical protein
85	 42.42	-1	85611..85775	+	54	15836690	-	XF0085	-	hypothetical protein
86	 53.37	0	86421..86909	-	162	15836691	-	XF0086	-	hypothetical protein
87	 51.68	0	86989..88296	-	435	15836692	-	XF0087	-	alpha-ketoglutarate permease symporter
88	 53.95	0	88345..89697	-	450	15836693	-	XF0088	-	GTP-binding protein
89	 46.95	0	89712..89990	-	92	15836694	hfq	XF0089	-	RNA-binding protein Hfq
90	 53.46	0	90094..91047	-	317	15836695	miaA	XF0090	-	tRNA delta(2)-isopentenylpyrophosphate transferase
91	 54.74	0	91047..91943	-	298	15836696	-	XF0091	-	dihydropteroate synthase
92	 48.79	0	92044..92250	+	68	15836697	-	XF0092	-	hypothetical protein
93	 50.88	0	92252..94189	-	645	15836698	-	XF0093	-	cell division protein
94	 49.38	0	94237..94878	-	213	15836699	-	XF0094	-	cell division protein
95	 48.37	0	94948..95253	+	101	15836700	-	XF0095	-	hypothetical protein
96	 54.86	0	95272..95652	+	126	15836701	-	XF0096	-	hypothetical protein
97	 42.42	-1	95805..95969	+	54	15836702	-	XF0097	-	hypothetical protein
98	 47.69	0	96040..96234	-	64	15836703	-	XF0098	-	hypothetical protein
99	 54.83	0	96231..98063	-	610	15836704	-	XF0099	-	dihydroxy-acid dehydratase
100	 56.64	0	98328..98726	-	132	15836705	-	XF0100	-	hypothetical protein
101	 59.09	+1	99079..99276	+	65	77747486	-	XF0101	-	hypothetical protein
102	 57.21	0	99277..100407	+	376	15836707	-	XF0102	-	hypothetical protein
103	 56.16	0	100388..101719	+	443	15836708	-	XF0103	-	membrane protein
104	 56.90	0	101904..102743	-	279	15836709	-	XF0104	-	lipid A biosynthesis lauroyl acyltransferase
105	 53.82	0	102867..104213	+	448	15836710	-	XF0105	-	3-deoxy-D-manno-octulosonic-acid transferase
106	 52.28	0	104597..105979	+	460	15836711	-	XF0106	-	hypothetical protein
107	 54.41	0	106195..106455	+	86	15836712	rpsP	XF0107	-	30S ribosomal protein S16
108	 51.66	0	106499..107011	+	170	15836713	rimM	XF0108	-	16S rRNA-processing protein
109	 53.31	0	107121..107906	+	261	15836714	trmD	XF0109	-	tRNA (guanine-N(1)-)-methyltransferase
110	 50.36	0	108071..108481	+	136	15836715	rplS	XF0110	-	50S ribosomal protein L19
111	 52.95	0	108906..109685	+	259	15836716	-	XF0111	-	methionine aminopeptidase
112	 52.31	0	109735..109929	+	64	15836717	-	XF0112	-	hypothetical protein
113	 48.81	0	110043..110210	+	55	15836718	-	XF0113	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.