IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
552	 45.36	-1	544425..544607	+	60	15837157	-	XF0555	-	hypothetical protein
553	 59.36	+1	544600..545625	+	341	15837158	-	XF0556	-	ribosome-associated GTPase
554	 55.70	0	545847..546302	-	151	15837159	-	XF0557	-	electron transfer protein azurin I
555	 53.17	0	546449..546574	-	41	15837160	-	XF0558	-	hypothetical protein
556	 46.56	0	547063..547251	+	62	15837161	-	XF0559	-	hypothetical protein
557	 57.54	0	547223..547945	+	240	15837162	-	XF0560	-	glutamine amidotransferase
558	 51.73	0	548216..549112	+	298	77747506	-	XF0561	-	hypothetical protein
559	 54.12	0	549180..549920	-	246	15837164	-	XF0562	-	sec-independent protein translocase
560	 52.01	0	549917..550339	-	140	15837165	-	XF0563	-	sec-independent translocase
561	 55.56	0	550357..550572	-	71	15837166	tatA	XF0564	-	twin argininte translocase protein A
562	 55.74	0	550647..551552	-	301	15837167	-	XF0565	-	hypothetical protein
563	 55.52	0	551674..552687	+	337	15837168	hemH	XF0566	-	ferrochelatase
564	 56.73	0	553023..553787	-	254	15837169	-	XF0567	-	hypothetical protein
565	 51.49	0	553855..554763	-	302	15837170	rdgC	XF0568	-	recombination associated protein
566	 54.22	0	554802..555701	-	299	77747507	-	XF0569	-	hypothetical protein
567	 39.39	-2	556098..556328	+	76	15837172	-	XF0570	-	hypothetical protein
568	 47.95	0	556369..556539	-	56	15837173	-	XF0571	-	hypothetical protein
569	 52.11	0	556753..557274	-	173	15837174	-	XF0572	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
570	 45.98	0	557480..557653	+	57	15837175	-	XF0573	-	hypothetical protein
571	 47.93	0	557691..558101	+	136	15837176	-	XF0574	-	hypothetical protein
572	 55.84	0	558092..558442	+	116	15837177	-	XF0575	-	hypothetical protein
573	 54.21	0	558463..560565	-	700	15837178	-	XF0576	-	metallopeptidase
574	 46.00	0	560716..560865	+	49	15837179	-	XF0577	-	hypothetical protein
575	 55.07	0	560900..561037	+	45	15837180	-	XF0578	-	hypothetical protein
576	 53.15	0	561109..561330	+	73	15837181	-	XF0579	-	hypothetical protein
577	 56.27	0	561340..561993	+	217	15837182	tdk	XF0580	-	thymidylate kinase
578	 55.71	0	562089..562298	+	69	15837183	-	XF0581	-	hypothetical protein
579	 45.31	-1	562336..562527	+	63	15837184	-	XF0582	-	hypothetical protein
580	 51.17	0	562566..563249	-	227	77747508	-	XF0583	-	hypothetical protein
581	 53.15	0	563253..564110	-	285	77747509	-	XF0584	-	hypothetical protein
582	 57.70	0	564176..564844	-	222	15837187	purN	XF0585	-	phosphoribosylglycinamide formyltransferase
583	 50.68	0	564862..565155	-	97	15837188	-	XF0586	-	hypothetical protein
584	 55.40	0	565157..566212	-	351	15837189	-	XF0587	-	phosphoribosylaminoimidazole synthetase
585	 56.27	0	566263..567435	+	390	15837190	-	XF0588	-	hypothetical protein
586	 51.21	0	567432..568589	+	385	15837191	-	XF0589	-	permease
587	 56.55	0	568586..569287	+	233	15837192	-	XF0590	-	hypothetical protein
588	 57.81	0	569473..570195	-	240	15837193	-	XF0591	-	virulence factor
589	 53.57	0	570192..571298	-	368	15837194	-	XF0592	-	hypothetical protein
590	 47.58	0	571736..572065	+	109	15837195	-	XF0593	-	hypothetical protein
591	 55.66	0	572810..573745	-	311	15837196	-	XF0594	-	thiamine biosynthesis lipoprotein ApbE precursor
592	 53.48	0	573856..574659	-	267	15837197	-	XF0595	-	hypothetical protein
593	 55.24	0	574684..575208	-	174	15837198	-	XF0596	-	hypothetical protein
594	 60.58	+1	575234..575890	-	218	15837199	-	XF0597	-	hypothetical protein
595	 55.56	0	575900..576592	-	230	15837200	-	XF0598	-	putative hydroxylase
596	 53.50	0	576636..578966	-	776	15837201	-	XF0599	-	catecholate siderophore receptor Fiu
597	 50.85	0	579289..579699	+	136	15837202	-	XF0600	-	hypothetical protein
598	 53.58	0	579699..580592	+	297	15837203	-	XF0601	-	hypothetical protein
599	 43.69	-1	580922..581143	+	73	15837204	-	XF0602	-	hypothetical protein
600	 48.36	0	581277..582647	+	456	15837205	-	XF0603	-	cystathionine beta-synthase
601	 45.06	-1	582700..582861	-	53	15837206	-	XF0604	-	hypothetical protein
602	 31.91	-2	582883..583023	+	46	15837207	-	XF0605	-	hypothetical protein
603	 39.88	-1	583171..583338	+	55	15837208	-	XF0606	-	hypothetical protein
604	 51.20	0	583338..584708	+	456	15837209	-	XF0607	-	hypothetical protein
605	 51.76	0	584709..587258	+	849	15837210	-	XF0608	-	mannosyltransferase
606	 47.36	0	587350..588390	+	346	15837211	-	XF0609	-	GDP-mannose 4,6 dehydratase
607	 49.10	0	588420..589307	+	295	15837212	-	XF0610	-	UDP-glucose 4-epimerase
608	 48.89	0	589338..590327	+	329	15837213	-	XF0611	-	dTDP-glucose 4-6-dehydratase
609	 47.06	0	590330..591283	+	317	15837214	-	XF0612	-	dolichol-phosphate mannosyltransferase
610	 37.54	-2	591683..592276	+	197	15837215	-	XF0613	-	hypothetical protein
611	 41.71	-1	592267..594354	+	695	15837216	-	XF0614	-	hypothetical protein
612	 51.52	0	594635..596278	-	547	15837217	groEL	XF0615	-	chaperonin GroEL
613	 52.43	0	596389..596676	-	95	15837218	groES	XF0616	-	co-chaperonin GroES
614	 45.77	-1	596806..597006	+	66	15837219	-	XF0617	-	hypothetical protein
615	 53.76	0	597091..597183	+	30	15837220	-	XF0618	-	hypothetical protein
616	 49.56	0	597292..597630	+	112	15837221	-	XF0619	-	periplasmic divalent cation tolerance protein
617	 52.31	0	597627..599903	+	758	15837222	-	XF0620	-	c-type cytochrome biogenesis protein (copper tolerance)
618	 54.42	0	600068..600892	-	274	15837223	-	XF0621	-	phosphomethylpyrimidine kinase
619	 51.85	0	600874..601089	-	71	15837224	-	XF0622	-	hypothetical protein
620	 47.75	0	601839..602171	+	110	15837225	-	XF0623	-	hypothetical protein
621	 54.89	0	602559..603407	+	282	15837226	aroE	XF0624	-	shikimate 5-dehydrogenase
622	 47.57	0	603402..603668	-	88	15837227	-	XF0625	-	hypothetical protein
623	 55.56	0	603792..604403	-	203	15837228	-	XF0626	-	hypothetical protein
624	 43.65	-1	604465..604716	-	83	15837229	-	XF0627	-	hypothetical protein
625	 48.89	0	604931..605290	-	119	15837230	-	XF0628	-	hypothetical protein
626	 53.59	0	605696..606406	-	236	15837231	-	XF0629	-	hypothetical protein
627	 54.72	0	606421..606897	-	158	15837232	-	XF0630	-	hypothetical protein
628	 58.21	0	607242..608483	+	413	15837233	-	XF0631	-	phage-related integrase
629	 58.84	+1	608597..608941	+	114	15837234	-	XF0632	-	hypothetical protein
630	 60.56	+1	609069..610427	+	452	15837235	-	XF0633	-	hypothetical protein
631	 64.20	+1	610624..611109	-	161	15837236	-	XF0634	-	hypothetical protein
632	 60.17	+1	611355..612077	+	240	15837237	-	XF0635	-	hypothetical protein
633	 62.39	+1	612114..612581	+	155	15837238	-	XF0636	-	hypothetical protein
634	 59.15	+1	612578..612790	+	70	15837239	-	XF0637	-	hypothetical protein
635	 63.04	+1	612929..613534	-	201	15837240	-	XF0638	-	hypothetical protein
636	 67.15	+2	613531..613737	-	68	15837241	-	XF0639	-	hypothetical protein
637	 57.39	0	613830..614681	-	283	15837242	-	XF0640	-	hypothetical protein
638	 56.69	0	614678..615820	-	380	15837243	-	XF0641	-	DNA methyltransferase
639	 47.85	0	616284..616469	+	61	15837244	-	XF0642	-	hypothetical protein
640	 52.38	0	616520..616708	-	62	15837245	-	XF0643	-	hypothetical protein
641	 51.95	0	616918..617610	-	230	15837246	-	XF0644	-	peptidyl-prolyl cis-trans isomerase
642	 43.09	-1	617813..617935	+	40	15837247	-	XF0645	-	hypothetical protein
643	 57.64	0	618171..618602	+	143	15837248	-	XF0646	-	hypothetical protein
644	 51.29	0	618629..619285	+	218	15837249	-	XF0647	-	endonuclease III
645	 48.65	0	619405..619626	+	73	15837250	-	XF0648	-	hypothetical protein
646	 51.85	0	619605..620279	-	224	15837251	-	XF0649	-	hypothetical protein
647	 49.57	0	620313..620429	+	38	15837252	-	XF0650	-	hypothetical protein
648	 54.29	0	620725..622017	-	430	15837253	-	XF0651	-	transport protein
649	 53.75	0	622038..622517	-	159	15837254	-	XF0652	-	peptidyl-prolyl cis-trans isomerase
650	 56.18	0	622544..623182	+	212	15837255	-	XF0653	-	hypothetical protein
651	 52.94	0	623228..624094	+	288	15837256	-	XF0654	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.