IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
517	 61.90	+1	514422..514589	+	55	15837122	-	XF0520	-	hypothetical protein
518	 60.94	+1	514590..517103	+	837	15837123	-	XF0521	-	hypothetical protein
519	 64.81	+2	517096..518283	+	395	15837124	-	XF0522	-	hypothetical protein
520	 62.23	+1	518273..519715	+	480	15837125	-	XF0523	-	hypothetical protein
521	 65.03	+2	519706..520134	+	142	15837126	-	XF0524	-	hypothetical protein
522	 61.18	+1	520131..520367	+	78	15837127	-	XF0525	-	hypothetical protein
523	 61.36	+1	520357..523182	+	941	15837128	-	XF0526	-	hypothetical protein
524	 62.77	+1	523175..523687	+	170	15837129	-	XF0527	-	hypothetical protein
525	 56.94	0	523823..524110	+	95	15837130	-	XF0528	-	hypothetical protein
526	 60.92	+1	524186..524881	+	231	15837131	-	XF0529	-	hypothetical protein
527	 59.52	+1	525069..525194	+	41	15837132	-	XF0530	-	hypothetical protein
528	 40.90	-1	525339..526343	+	334	15837133	-	XF0531	-	hypothetical protein
529	 48.30	0	526772..527065	-	97	15837134	-	XF0532	-	hypothetical protein
530	 50.00	0	527049..527336	-	95	15837135	-	XF0533	-	hypothetical protein
531	 50.43	0	527619..527963	-	114	15837136	-	XF0534	-	hypothetical protein
532	 54.92	0	528651..528965	+	104	15837137	-	XF0535	-	transposase OrfA
533	 56.23	0	529095..530138	+	347	77747504	-	XF0536	-	transposase OrfB
534	 57.35	0	530235..530642	+	135	15837139	-	XF0537	-	hypothetical protein
535	 53.83	0	530636..531196	-	186	15837140	-	XF0538	-	fimbrillin
536	 51.60	0	531197..531760	-	187	15837141	-	XF0539	-	fimbrillin
537	 55.64	0	532316..532696	+	126	15837142	-	XF0540	-	hypothetical protein
538	 57.53	0	532672..532857	+	61	15837143	-	XF0541	-	hypothetical protein
539	 56.61	0	532901..533089	-	62	15837144	-	XF0542	-	hypothetical protein
540	 51.12	0	533197..533865	+	222	15837145	-	XF0543	-	hypothetical protein
541	 54.76	0	533877..534044	-	55	15837146	-	XF0544	-	hypothetical protein
542	 49.73	0	534020..534202	+	60	15837147	-	XF0545	-	hypothetical protein
543	 50.75	0	534357..534557	+	66	15837148	-	XF0546	-	hypothetical protein
544	 61.25	+1	534674..535153	-	159	15837149	-	XF0547	-	ferredoxin
545	 50.00	0	535158..535319	-	53	15837150	-	XF0548	-	hypothetical protein
546	 56.78	0	535409..537481	-	690	77747505	metG	XF0549	-	methionyl-tRNA synthetase
547	 56.14	0	537646..540771	-	1041	15837152	-	XF0550	-	hypothetical protein
548	 40.00	-1	540833..541027	+	64	15837153	-	XF0551	-	hypothetical protein
549	 58.52	+1	541289..542110	-	273	15837154	-	XF0552	-	hypothetical protein
550	 58.58	+1	542192..543922	+	576	15837155	-	XF0553	-	hypothetical protein
551	 56.01	0	543926..544291	+	121	15837156	-	XF0554	-	hypothetical protein
552	 45.36	-1	544425..544607	+	60	15837157	-	XF0555	-	hypothetical protein
553	 59.36	+1	544600..545625	+	341	15837158	-	XF0556	-	ribosome-associated GTPase
554	 55.70	0	545847..546302	-	151	15837159	-	XF0557	-	electron transfer protein azurin I
555	 53.17	0	546449..546574	-	41	15837160	-	XF0558	-	hypothetical protein
556	 46.56	0	547063..547251	+	62	15837161	-	XF0559	-	hypothetical protein
557	 57.54	0	547223..547945	+	240	15837162	-	XF0560	-	glutamine amidotransferase
558	 51.73	0	548216..549112	+	298	77747506	-	XF0561	-	hypothetical protein
559	 54.12	0	549180..549920	-	246	15837164	-	XF0562	-	sec-independent protein translocase
560	 52.01	0	549917..550339	-	140	15837165	-	XF0563	-	sec-independent translocase
561	 55.56	0	550357..550572	-	71	15837166	tatA	XF0564	-	twin argininte translocase protein A
562	 55.74	0	550647..551552	-	301	15837167	-	XF0565	-	hypothetical protein
563	 55.52	0	551674..552687	+	337	15837168	hemH	XF0566	-	ferrochelatase
564	 56.73	0	553023..553787	-	254	15837169	-	XF0567	-	hypothetical protein
565	 51.49	0	553855..554763	-	302	15837170	rdgC	XF0568	-	recombination associated protein
566	 54.22	0	554802..555701	-	299	77747507	-	XF0569	-	hypothetical protein
567	 39.39	-2	556098..556328	+	76	15837172	-	XF0570	-	hypothetical protein
568	 47.95	0	556369..556539	-	56	15837173	-	XF0571	-	hypothetical protein
569	 52.11	0	556753..557274	-	173	15837174	-	XF0572	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
570	 45.98	0	557480..557653	+	57	15837175	-	XF0573	-	hypothetical protein
571	 47.93	0	557691..558101	+	136	15837176	-	XF0574	-	hypothetical protein
572	 55.84	0	558092..558442	+	116	15837177	-	XF0575	-	hypothetical protein
573	 54.21	0	558463..560565	-	700	15837178	-	XF0576	-	metallopeptidase
574	 46.00	0	560716..560865	+	49	15837179	-	XF0577	-	hypothetical protein
575	 55.07	0	560900..561037	+	45	15837180	-	XF0578	-	hypothetical protein
576	 53.15	0	561109..561330	+	73	15837181	-	XF0579	-	hypothetical protein
577	 56.27	0	561340..561993	+	217	15837182	tdk	XF0580	-	thymidylate kinase
578	 55.71	0	562089..562298	+	69	15837183	-	XF0581	-	hypothetical protein
579	 45.31	-1	562336..562527	+	63	15837184	-	XF0582	-	hypothetical protein
580	 51.17	0	562566..563249	-	227	77747508	-	XF0583	-	hypothetical protein
581	 53.15	0	563253..564110	-	285	77747509	-	XF0584	-	hypothetical protein
582	 57.70	0	564176..564844	-	222	15837187	purN	XF0585	-	phosphoribosylglycinamide formyltransferase
583	 50.68	0	564862..565155	-	97	15837188	-	XF0586	-	hypothetical protein
584	 55.40	0	565157..566212	-	351	15837189	-	XF0587	-	phosphoribosylaminoimidazole synthetase
585	 56.27	0	566263..567435	+	390	15837190	-	XF0588	-	hypothetical protein
586	 51.21	0	567432..568589	+	385	15837191	-	XF0589	-	permease
587	 56.55	0	568586..569287	+	233	15837192	-	XF0590	-	hypothetical protein
588	 57.81	0	569473..570195	-	240	15837193	-	XF0591	-	virulence factor
589	 53.57	0	570192..571298	-	368	15837194	-	XF0592	-	hypothetical protein
590	 47.58	0	571736..572065	+	109	15837195	-	XF0593	-	hypothetical protein
591	 55.66	0	572810..573745	-	311	15837196	-	XF0594	-	thiamine biosynthesis lipoprotein ApbE precursor
592	 53.48	0	573856..574659	-	267	15837197	-	XF0595	-	hypothetical protein
593	 55.24	0	574684..575208	-	174	15837198	-	XF0596	-	hypothetical protein
594	 60.58	+1	575234..575890	-	218	15837199	-	XF0597	-	hypothetical protein
595	 55.56	0	575900..576592	-	230	15837200	-	XF0598	-	putative hydroxylase
596	 53.50	0	576636..578966	-	776	15837201	-	XF0599	-	catecholate siderophore receptor Fiu
597	 50.85	0	579289..579699	+	136	15837202	-	XF0600	-	hypothetical protein
598	 53.58	0	579699..580592	+	297	15837203	-	XF0601	-	hypothetical protein
599	 43.69	-1	580922..581143	+	73	15837204	-	XF0602	-	hypothetical protein
600	 48.36	0	581277..582647	+	456	15837205	-	XF0603	-	cystathionine beta-synthase
601	 45.06	-1	582700..582861	-	53	15837206	-	XF0604	-	hypothetical protein
602	 31.91	-2	582883..583023	+	46	15837207	-	XF0605	-	hypothetical protein
603	 39.88	-1	583171..583338	+	55	15837208	-	XF0606	-	hypothetical protein
604	 51.20	0	583338..584708	+	456	15837209	-	XF0607	-	hypothetical protein
605	 51.76	0	584709..587258	+	849	15837210	-	XF0608	-	mannosyltransferase
606	 47.36	0	587350..588390	+	346	15837211	-	XF0609	-	GDP-mannose 4,6 dehydratase
607	 49.10	0	588420..589307	+	295	15837212	-	XF0610	-	UDP-glucose 4-epimerase
608	 48.89	0	589338..590327	+	329	15837213	-	XF0611	-	dTDP-glucose 4-6-dehydratase
609	 47.06	0	590330..591283	+	317	15837214	-	XF0612	-	dolichol-phosphate mannosyltransferase
610	 37.54	-2	591683..592276	+	197	15837215	-	XF0613	-	hypothetical protein
611	 41.71	-1	592267..594354	+	695	15837216	-	XF0614	-	hypothetical protein
612	 51.52	0	594635..596278	-	547	15837217	groEL	XF0615	-	chaperonin GroEL
613	 52.43	0	596389..596676	-	95	15837218	groES	XF0616	-	co-chaperonin GroES
614	 45.77	-1	596806..597006	+	66	15837219	-	XF0617	-	hypothetical protein
615	 53.76	0	597091..597183	+	30	15837220	-	XF0618	-	hypothetical protein
616	 49.56	0	597292..597630	+	112	15837221	-	XF0619	-	periplasmic divalent cation tolerance protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.