IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
492	 49.50	0	494469..494771	+	100	15837097	-	XF0495	-	hypothetical protein
493	 51.28	0	495057..496232	+	391	15837098	-	XF0496	-	hypothetical protein
494	 50.64	0	496232..496699	+	155	15837099	-	XF0497	-	hypothetical protein
495	 53.03	0	496758..496889	-	43	15837100	-	XF0498	-	hypothetical protein
496	 51.98	0	497039..497569	-	176	15837101	-	XF0499	-	hypothetical protein
497	 55.09	0	497606..498037	-	143	15837102	-	XF0500	-	phage-related repressor protein
498	 56.19	0	498096..498410	+	104	15837103	-	XF0501	-	hypothetical protein
499	 59.80	+1	498442..498747	+	101	15837104	-	XF0502	-	hypothetical protein
500	 59.37	+1	498826..499428	+	200	15837105	-	XF0503	-	hypothetical protein
501	 64.41	+1	499492..499713	+	73	15837106	-	XF0504	-	hypothetical protein
502	 64.58	+1	499912..500964	+	350	15837107	-	XF0505	-	hypothetical protein
503	 61.21	+1	500964..502430	+	488	15837108	-	XF0506	-	virulence-associated protein E
504	 62.94	+1	502845..503435	+	196	15837109	-	XF0507	-	hypothetical protein
505	 63.19	+1	503432..505531	+	699	15837110	-	XF0508	-	phage-related terminase large subunit
506	 62.87	+1	505817..506053	+	78	15837111	-	XF0509	-	hypothetical protein
507	 63.15	+1	506050..507612	+	520	15837112	-	XF0510	-	hypothetical protein
508	 64.10	+1	507660..509918	+	752	15837113	-	XF0511	-	hypothetical protein
509	 57.50	0	509991..510350	+	119	15837114	-	XF0512	-	hypothetical protein
510	 61.51	+1	510678..511142	+	154	15837115	-	XF0513	-	phage-related endolysin
511	 59.10	+1	511121..511543	+	140	15837116	-	XF0514	-	hypothetical protein
512	 59.80	+1	511664..512449	+	261	15837117	-	XF0515	-	hypothetical protein
513	 61.06	+1	512446..512766	+	106	15837118	-	XF0516	-	hypothetical protein
514	 61.55	+1	512748..513236	+	162	15837119	-	XF0517	-	hypothetical protein
515	 61.60	+1	513233..513982	+	249	15837120	-	XF0518	-	hypothetical protein
516	 61.52	+1	513979..514425	+	148	15837121	-	XF0519	-	hypothetical protein
517	 61.90	+1	514422..514589	+	55	15837122	-	XF0520	-	hypothetical protein
518	 60.94	+1	514590..517103	+	837	15837123	-	XF0521	-	hypothetical protein
519	 64.81	+2	517096..518283	+	395	15837124	-	XF0522	-	hypothetical protein
520	 62.23	+1	518273..519715	+	480	15837125	-	XF0523	-	hypothetical protein
521	 65.03	+2	519706..520134	+	142	15837126	-	XF0524	-	hypothetical protein
522	 61.18	+1	520131..520367	+	78	15837127	-	XF0525	-	hypothetical protein
523	 61.36	+1	520357..523182	+	941	15837128	-	XF0526	-	hypothetical protein
524	 62.77	+1	523175..523687	+	170	15837129	-	XF0527	-	hypothetical protein
525	 56.94	0	523823..524110	+	95	15837130	-	XF0528	-	hypothetical protein
526	 60.92	+1	524186..524881	+	231	15837131	-	XF0529	-	hypothetical protein
527	 59.52	+1	525069..525194	+	41	15837132	-	XF0530	-	hypothetical protein
528	 40.90	-1	525339..526343	+	334	15837133	-	XF0531	-	hypothetical protein
529	 48.30	0	526772..527065	-	97	15837134	-	XF0532	-	hypothetical protein
530	 50.00	0	527049..527336	-	95	15837135	-	XF0533	-	hypothetical protein
531	 50.43	0	527619..527963	-	114	15837136	-	XF0534	-	hypothetical protein
532	 54.92	0	528651..528965	+	104	15837137	-	XF0535	-	transposase OrfA
533	 56.23	0	529095..530138	+	347	77747504	-	XF0536	-	transposase OrfB
534	 57.35	0	530235..530642	+	135	15837139	-	XF0537	-	hypothetical protein
535	 53.83	0	530636..531196	-	186	15837140	-	XF0538	-	fimbrillin
536	 51.60	0	531197..531760	-	187	15837141	-	XF0539	-	fimbrillin
537	 55.64	0	532316..532696	+	126	15837142	-	XF0540	-	hypothetical protein
538	 57.53	0	532672..532857	+	61	15837143	-	XF0541	-	hypothetical protein
539	 56.61	0	532901..533089	-	62	15837144	-	XF0542	-	hypothetical protein
540	 51.12	0	533197..533865	+	222	15837145	-	XF0543	-	hypothetical protein
541	 54.76	0	533877..534044	-	55	15837146	-	XF0544	-	hypothetical protein
542	 49.73	0	534020..534202	+	60	15837147	-	XF0545	-	hypothetical protein
543	 50.75	0	534357..534557	+	66	15837148	-	XF0546	-	hypothetical protein
544	 61.25	+1	534674..535153	-	159	15837149	-	XF0547	-	ferredoxin
545	 50.00	0	535158..535319	-	53	15837150	-	XF0548	-	hypothetical protein
546	 56.78	0	535409..537481	-	690	77747505	metG	XF0549	-	methionyl-tRNA synthetase
547	 56.14	0	537646..540771	-	1041	15837152	-	XF0550	-	hypothetical protein
548	 40.00	-1	540833..541027	+	64	15837153	-	XF0551	-	hypothetical protein
549	 58.52	+1	541289..542110	-	273	15837154	-	XF0552	-	hypothetical protein
550	 58.58	+1	542192..543922	+	576	15837155	-	XF0553	-	hypothetical protein
551	 56.01	0	543926..544291	+	121	15837156	-	XF0554	-	hypothetical protein
552	 45.36	-1	544425..544607	+	60	15837157	-	XF0555	-	hypothetical protein
553	 59.36	+1	544600..545625	+	341	15837158	-	XF0556	-	ribosome-associated GTPase
554	 55.70	0	545847..546302	-	151	15837159	-	XF0557	-	electron transfer protein azurin I
555	 53.17	0	546449..546574	-	41	15837160	-	XF0558	-	hypothetical protein
556	 46.56	0	547063..547251	+	62	15837161	-	XF0559	-	hypothetical protein
557	 57.54	0	547223..547945	+	240	15837162	-	XF0560	-	glutamine amidotransferase
558	 51.73	0	548216..549112	+	298	77747506	-	XF0561	-	hypothetical protein
559	 54.12	0	549180..549920	-	246	15837164	-	XF0562	-	sec-independent protein translocase
560	 52.01	0	549917..550339	-	140	15837165	-	XF0563	-	sec-independent translocase
561	 55.56	0	550357..550572	-	71	15837166	tatA	XF0564	-	twin argininte translocase protein A
562	 55.74	0	550647..551552	-	301	15837167	-	XF0565	-	hypothetical protein
563	 55.52	0	551674..552687	+	337	15837168	hemH	XF0566	-	ferrochelatase
564	 56.73	0	553023..553787	-	254	15837169	-	XF0567	-	hypothetical protein
565	 51.49	0	553855..554763	-	302	15837170	rdgC	XF0568	-	recombination associated protein
566	 54.22	0	554802..555701	-	299	77747507	-	XF0569	-	hypothetical protein
567	 39.39	-2	556098..556328	+	76	15837172	-	XF0570	-	hypothetical protein
568	 47.95	0	556369..556539	-	56	15837173	-	XF0571	-	hypothetical protein
569	 52.11	0	556753..557274	-	173	15837174	-	XF0572	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
570	 45.98	0	557480..557653	+	57	15837175	-	XF0573	-	hypothetical protein
571	 47.93	0	557691..558101	+	136	15837176	-	XF0574	-	hypothetical protein
572	 55.84	0	558092..558442	+	116	15837177	-	XF0575	-	hypothetical protein
573	 54.21	0	558463..560565	-	700	15837178	-	XF0576	-	metallopeptidase
574	 46.00	0	560716..560865	+	49	15837179	-	XF0577	-	hypothetical protein
575	 55.07	0	560900..561037	+	45	15837180	-	XF0578	-	hypothetical protein
576	 53.15	0	561109..561330	+	73	15837181	-	XF0579	-	hypothetical protein
577	 56.27	0	561340..561993	+	217	15837182	tdk	XF0580	-	thymidylate kinase
578	 55.71	0	562089..562298	+	69	15837183	-	XF0581	-	hypothetical protein
579	 45.31	-1	562336..562527	+	63	15837184	-	XF0582	-	hypothetical protein
580	 51.17	0	562566..563249	-	227	77747508	-	XF0583	-	hypothetical protein
581	 53.15	0	563253..564110	-	285	77747509	-	XF0584	-	hypothetical protein
582	 57.70	0	564176..564844	-	222	15837187	purN	XF0585	-	phosphoribosylglycinamide formyltransferase
583	 50.68	0	564862..565155	-	97	15837188	-	XF0586	-	hypothetical protein
584	 55.40	0	565157..566212	-	351	15837189	-	XF0587	-	phosphoribosylaminoimidazole synthetase
585	 56.27	0	566263..567435	+	390	15837190	-	XF0588	-	hypothetical protein
586	 51.21	0	567432..568589	+	385	15837191	-	XF0589	-	permease
587	 56.55	0	568586..569287	+	233	15837192	-	XF0590	-	hypothetical protein
588	 57.81	0	569473..570195	-	240	15837193	-	XF0591	-	virulence factor
589	 53.57	0	570192..571298	-	368	15837194	-	XF0592	-	hypothetical protein
590	 47.58	0	571736..572065	+	109	15837195	-	XF0593	-	hypothetical protein
591	 55.66	0	572810..573745	-	311	15837196	-	XF0594	-	thiamine biosynthesis lipoprotein ApbE precursor
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.