IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
401	 49.25	0	413314..413778	+	154	15837006	-	XF0404	-	hypothetical protein
402	 48.06	0	413813..414199	+	128	15837007	-	XF0405	-	iron-sulfur cluster insertion protein ErpA
403	 50.94	0	414291..415250	-	319	15837008	-	XF0406	-	export protein
404	 54.53	0	415519..416688	+	389	15837009	-	XF0407	-	hypothetical protein
405	 54.82	0	417063..418505	-	480	77747501	-	XF0408	-	amino acid transporter
406	 44.23	-1	418692..418847	-	51	15837011	-	XF0409	-	hypothetical protein
407	 46.06	0	418822..418986	+	54	15837012	-	XF0410	-	hypothetical protein
408	 55.38	0	419259..421013	+	584	15837013	-	XF0411	-	ABC transporter nitrate permease
409	 54.07	0	421059..422360	+	433	15837014	-	XF0412	-	nitrate ABC transporter ATP-binding protein
410	 54.19	0	422702..424072	+	456	15837015	-	XF0413	-	hypothetical protein
411	 45.64	-1	424311..424505	+	64	15837016	-	XF0414	-	hypothetical protein
412	 47.26	0	424508..424708	+	66	15837017	-	XF0415	-	hypothetical protein
413	 54.26	0	424760..425815	-	351	15837018	-	XF0416	-	lipoprotein precursor
414	 53.59	0	425830..426135	-	101	15837019	-	XF0417	-	hypothetical protein
415	 51.29	0	426125..426781	-	218	15837020	-	XF0418	-	toluene tolerance protein
416	 52.70	0	426778..427314	-	178	15837021	-	XF0419	-	toluene tolerance protein
417	 54.80	0	427456..428205	-	249	15837022	-	XF0420	-	toluene tolerance protein
418	 57.74	0	428205..428999	-	264	15837023	-	XF0421	-	toluene tolerance protein
419	 61.05	+1	429245..432610	+	1121	15837024	-	XF0422	-	exodeoxyribonuclease V gamma chain
420	 61.09	+1	432697..436335	+	1212	15837025	-	XF0423	-	exodeoxyribonuclease V beta chain
421	 59.67	+1	436326..436568	+	80	15837026	-	XF0424	-	hypothetical protein
422	 62.66	+1	436565..438484	+	639	15837027	-	XF0425	-	exodeoxyribonuclease V alpha chain
423	 57.86	0	438577..438735	-	52	15837028	-	XF0426	-	hypothetical protein
424	 53.01	0	438786..438968	+	60	15837029	-	XF0427	-	hypothetical protein
425	 55.33	0	439143..440447	+	434	15837030	-	XF0428	-	tryptophanyl-tRNA synthetase
426	 54.17	0	440656..440847	-	63	15837031	-	XF0429	-	hypothetical protein
427	 56.29	0	440844..442577	-	577	15837032	dnaG	XF0430	-	DNA primase
428	 57.89	0	442591..442761	+	56	15837033	-	XF0431	-	hypothetical protein
429	 54.07	0	442832..443641	-	269	15837034	-	XF0432	-	BrkB protein
430	 50.56	0	443954..444400	-	148	15837035	-	XF0433	-	hypothetical protein
431	 52.78	0	444587..444802	-	71	15837036	rpsU	XF0434	-	30S ribosomal protein S21
432	 56.06	0	444975..446021	+	348	15837037	-	XF0435	-	O-sialoglycoprotein endopeptidase
433	 48.48	0	446104..446466	+	120	15837038	-	XF0436	-	dihydroneopterin aldolase
434	 49.68	0	446580..447998	+	472	15837039	-	XF0437	-	hypothetical protein
435	 43.59	-1	448138..448254	+	38	15837040	-	XF0438	-	hypothetical protein
436	 54.21	0	448471..450693	+	740	15837041	-	XF0439	-	beta-glucosidase
437	 36.95	-2	450905..451153	+	82	15837042	-	XF0440	-	hypothetical protein
438	 49.68	0	451421..451891	-	156	15837043	-	XF0441	-	ribosomal-protein-alanine acetyltransferase
439	 50.71	0	452314..453084	-	256	15837044	-	XF0442	-	phosphatidyltransferase
440	 45.10	-1	453138..453290	-	50	15837045	-	XF0443	-	hypothetical protein
441	 54.42	0	453277..453627	+	116	15837046	-	XF0444	-	hypothetical protein
442	 50.27	0	453712..455406	+	564	77747502	-	XF0445	-	prolyl-tRNA synthetase
443	 46.40	0	455556..455930	+	124	15837048	-	XF0446	-	DNA-binding protein
444	 33.83	-2	456269..456469	-	66	15837049	-	XF0447	-	hypothetical protein
445	 35.19	-2	456635..456742	+	35	15837050	-	XF0448	-	hypothetical protein
446	 44.16	-1	457038..457388	+	116	15837051	-	XF0449	-	hypothetical protein
447	 50.63	0	457972..458370	-	132	15837052	-	XF0450	-	two-component system, regulatory protein
448	 53.75	0	458451..459542	-	363	15837053	-	XF0451	-	hypothetical protein
449	 54.91	0	459602..460741	+	379	15837054	-	XF0452	-	integral membrane protease
450	 49.54	0	460738..461601	+	287	15837055	-	XF0453	-	integral membrane proteinase
451	 47.57	0	461680..461946	+	88	15837056	-	XF0454	-	hypothetical protein
452	 52.08	0	462109..463431	+	440	15837057	-	XF0455	-	adenylosuccinate synthetase
453	 37.29	-2	463737..463913	-	58	15837058	-	XF0456	-	hypothetical protein
454	 50.45	0	463948..464952	-	334	15837059	-	XF0457	-	glyceraldehyde-3-phosphate dehydrogenase
455	 47.65	0	466482..466907	+	141	15837060	ndk	XF0458	-	nucleoside diphosphate kinase
456	 50.45	0	466918..468138	+	406	15837061	-	XF0459	-	hypothetical protein
457	 52.90	0	468194..468934	+	246	15837062	-	XF0460	-	hypothetical protein
458	 54.72	0	468941..469576	+	211	15837063	-	XF0461	-	hypothetical protein
459	 54.05	0	469587..469808	+	73	15837064	-	XF0462	-	hypothetical protein
460	 51.60	0	469869..470525	+	218	15837065	-	XF0463	-	hypothetical protein
461	 53.35	0	470538..471761	+	407	15837066	-	XF0464	-	hypothetical protein
462	 54.29	0	471787..473184	+	465	15837067	engA	XF0465	-	GTP-binding protein EngA
463	 59.47	+1	473417..474556	-	379	15837068	-	XF0466	-	molybdopterin biosynthesis protein MoeB
464	 46.51	0	474553..474681	-	42	15837069	-	XF0467	-	hypothetical protein
465	 49.46	0	474935..475120	-	61	15837070	-	XF0468	-	hypothetical protein
466	 44.06	-1	475196..475456	-	86	15837071	-	XF0469	-	hypothetical protein
467	 51.82	0	475480..477048	+	522	77747503	-	XF0470	-	hypothetical protein
468	 46.51	0	477158..477286	+	42	15837073	-	XF0471	-	hypothetical protein
469	 51.41	0	477566..478915	+	449	15837074	-	XF0472	-	hypothetical protein
470	 54.39	0	479061..479573	+	170	15837075	-	XF0473	-	hypothetical protein
471	 51.94	0	479564..480052	+	162	15837076	-	XF0474	-	hypothetical protein
472	 51.56	0	480055..481305	+	416	15837077	-	XF0475	-	hypothetical protein
473	 49.49	0	481305..481799	+	164	15837078	-	XF0476	-	hypothetical protein
474	 53.45	0	481796..481969	+	57	15837079	-	XF0477	-	hypothetical protein
475	 50.89	0	481950..486368	+	1472	15837080	-	XF0478	-	fimbrial assembly protein
476	 50.26	0	486443..486820	+	125	15837081	-	XF0479	-	type IV pilin
477	 54.13	0	487057..488229	-	390	15837082	-	XF0480	-	hypothetical protein
478	 54.58	0	488229..488501	-	90	15837083	-	XF0481	-	hypothetical protein
479	 55.48	0	488523..488969	-	148	15837084	-	XF0482	-	single-strand DNA-binding protein
480	 48.20	0	488953..489423	-	156	15837085	-	XF0483	-	hypothetical protein
481	 54.11	0	489416..489622	-	68	15837086	-	XF0484	-	hypothetical protein
482	 54.03	0	489619..490164	-	181	15837087	-	XF0485	-	hypothetical protein
483	 44.12	-1	490161..490772	-	203	15837088	-	XF0486	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
484	 49.10	0	490847..491404	-	185	15837089	-	XF0487	-	fimbrillin
485	 55.81	0	491516..491782	-	88	15837090	-	XF0488	-	hypothetical protein
486	 60.40	+1	491768..492262	+	164	15837091	-	XF0489	-	hypothetical protein
487	 51.78	0	492272..492721	-	149	15837092	-	XF0490	-	hypothetical protein
488	 54.41	0	492718..493182	-	154	15837093	-	XF0491	-	hypothetical protein
489	 54.29	0	493179..493574	-	131	15837094	-	XF0492	-	hypothetical protein
490	 52.38	0	493571..493969	-	132	15837095	-	XF0493	-	hypothetical protein
491	 49.15	0	494079..494432	+	117	15837096	-	XF0494	-	hypothetical protein
492	 49.50	0	494469..494771	+	100	15837097	-	XF0495	-	hypothetical protein
493	 51.28	0	495057..496232	+	391	15837098	-	XF0496	-	hypothetical protein
494	 50.64	0	496232..496699	+	155	15837099	-	XF0497	-	hypothetical protein
495	 53.03	0	496758..496889	-	43	15837100	-	XF0498	-	hypothetical protein
496	 51.98	0	497039..497569	-	176	15837101	-	XF0499	-	hypothetical protein
497	 55.09	0	497606..498037	-	143	15837102	-	XF0500	-	phage-related repressor protein
498	 56.19	0	498096..498410	+	104	15837103	-	XF0501	-	hypothetical protein
499	 59.80	+1	498442..498747	+	101	15837104	-	XF0502	-	hypothetical protein
500	 59.37	+1	498826..499428	+	200	15837105	-	XF0503	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.