IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
352	 46.26	0	362867..363013	+	48	15836957	-	XF0355	-	hypothetical protein
353	 51.04	0	363376..364578	+	400	15836958	-	XF0356	-	cytochrome P-450 hydroxylase
354	 46.82	0	365164..366327	+	387	15836959	-	XF0357	-	hypothetical protein
355	 46.55	0	367442..368599	+	385	15836960	-	XF0358	-	hypothetical protein
356	 53.55	0	369020..369202	+	60	15836961	-	XF0359	-	hypothetical protein
357	 50.00	0	369172..369285	+	37	15836962	-	XF0360	-	hypothetical protein
358	 50.71	0	369297..370712	+	471	15836963	-	XF0361	-	replicative DNA helicase
359	 48.15	0	370914..371237	-	107	15836964	-	XF0362	-	hypothetical protein
360	 52.54	0	371375..372103	+	242	15836965	-	XF0363	-	hypothetical protein
361	 42.49	-1	372111..372383	-	90	15836966	-	XF0364	-	hypothetical protein
362	 49.51	0	372813..373016	-	67	15836967	-	XF0365	-	hypothetical protein
363	 56.39	0	373267..374220	-	317	15836968	-	XF0366	-	ribokinase
364	 52.06	0	374531..375694	+	387	15836969	-	XF0367	-	voltage-gated potassium channel beta subunit
365	 51.72	0	375998..378493	-	831	15836970	-	XF0368	-	penicillin binding protein 1A
366	 50.47	0	378548..379726	+	392	15836971	-	XF0369	-	fimbrial assembly membrane protein
367	 49.02	0	379726..380388	+	220	15836972	-	XF0370	-	fimbrial assembly membrane protein
368	 45.14	-1	380388..381056	+	222	15836973	-	XF0371	-	fimbrial assembly membrane protein
369	 49.91	0	381053..381583	+	176	15836974	-	XF0372	-	fimbrial assembly protein
370	 48.64	0	381583..383496	+	637	15836975	-	XF0373	-	fimbrial assembly protein
371	 47.27	0	384864..385631	+	255	15836976	-	XF0374	-	hypothetical protein
372	 49.91	0	385628..387286	+	552	15836977	-	XF0375	-	inner membrane protein
373	 43.21	-1	387598..387759	-	53	15836978	-	XF0376	-	hypothetical protein
374	 49.46	0	387900..389108	-	402	15836979	-	XF0377	-	cytochrome P450-like enzyme
375	 51.77	0	389990..390694	-	234	15836980	thiE	XF0378	-	thiamine-phosphate pyrophosphorylase
376	 56.32	0	390696..390869	+	57	15836981	-	XF0379	-	rubredoxin
377	 27.98	-2	391003..391170	-	55	15836982	-	XF0380	-	hypothetical protein
378	 51.66	0	391356..393941	+	861	15836983	-	XF0381	-	ATP-dependent Clp protease subunit
379	 56.28	0	394483..394665	-	60	15836984	-	XF0382	-	hypothetical protein
380	 46.88	0	394790..395269	-	159	15836985	-	XF0383	-	hypothetical protein
381	 50.83	0	395356..397401	+	681	15836986	-	XF0384	-	outer membrane hemin receptor
382	 45.26	-1	397940..398308	-	122	15836987	-	XF0385	-	hypothetical protein
383	 57.25	0	398796..398933	-	45	15836988	-	XF0386	-	hypothetical protein
384	 51.12	0	399121..400143	+	340	15836989	-	XF0387	-	tRNA-dihydrouridine synthase A
385	 50.81	0	400361..400732	+	123	15836990	-	XF0388	-	hypothetical protein
386	 49.71	0	400823..401506	+	227	15836991	-	XF0389	-	two-component system, regulatory protein
387	 51.00	0	401522..402970	+	482	15836992	-	XF0390	-	two-component system, sensor protein
388	 44.96	-1	403893..404150	+	85	15836993	-	XF0391	-	hypothetical protein
389	 48.27	0	404470..405681	+	403	15836994	-	XF0392	-	S-adenosylmethionine synthetase
390	 50.96	0	406080..406652	+	190	15836995	-	XF0393	-	dinucleoside polyphosphate hydrolase
391	 52.00	0	406755..406979	+	74	15836996	-	XF0394	-	hypothetical protein
392	 45.59	-1	407061..407525	+	154	15836997	-	XF0395	-	bacterioferritin
393	 52.48	0	407540..407821	+	93	15836998	-	XF0396	-	hypothetical protein
394	 48.07	0	408157..408570	-	137	15836999	-	XF0397	-	hypothetical protein
395	 51.97	0	408615..409199	-	194	15837000	-	XF0398	-	hypothetical protein
396	 47.18	0	409292..409486	-	64	15837001	-	XF0399	-	hypothetical protein
397	 49.24	0	409578..409973	-	131	15837002	-	XF0400	-	hypothetical protein
398	 48.91	0	409978..411678	-	566	15837003	-	XF0401	-	hypothetical protein
399	 48.33	0	412520..412759	+	79	15837004	-	XF0402	-	hypothetical protein
400	 48.16	0	412605..413339	+	244	77747500	-	XF0403	-	hypothetical protein
401	 49.25	0	413314..413778	+	154	15837006	-	XF0404	-	hypothetical protein
402	 48.06	0	413813..414199	+	128	15837007	-	XF0405	-	iron-sulfur cluster insertion protein ErpA
403	 50.94	0	414291..415250	-	319	15837008	-	XF0406	-	export protein
404	 54.53	0	415519..416688	+	389	15837009	-	XF0407	-	hypothetical protein
405	 54.82	0	417063..418505	-	480	77747501	-	XF0408	-	amino acid transporter
406	 44.23	-1	418692..418847	-	51	15837011	-	XF0409	-	hypothetical protein
407	 46.06	0	418822..418986	+	54	15837012	-	XF0410	-	hypothetical protein
408	 55.38	0	419259..421013	+	584	15837013	-	XF0411	-	ABC transporter nitrate permease
409	 54.07	0	421059..422360	+	433	15837014	-	XF0412	-	nitrate ABC transporter ATP-binding protein
410	 54.19	0	422702..424072	+	456	15837015	-	XF0413	-	hypothetical protein
411	 45.64	-1	424311..424505	+	64	15837016	-	XF0414	-	hypothetical protein
412	 47.26	0	424508..424708	+	66	15837017	-	XF0415	-	hypothetical protein
413	 54.26	0	424760..425815	-	351	15837018	-	XF0416	-	lipoprotein precursor
414	 53.59	0	425830..426135	-	101	15837019	-	XF0417	-	hypothetical protein
415	 51.29	0	426125..426781	-	218	15837020	-	XF0418	-	toluene tolerance protein
416	 52.70	0	426778..427314	-	178	15837021	-	XF0419	-	toluene tolerance protein
417	 54.80	0	427456..428205	-	249	15837022	-	XF0420	-	toluene tolerance protein
418	 57.74	0	428205..428999	-	264	15837023	-	XF0421	-	toluene tolerance protein
419	 61.05	+1	429245..432610	+	1121	15837024	-	XF0422	-	exodeoxyribonuclease V gamma chain
420	 61.09	+1	432697..436335	+	1212	15837025	-	XF0423	-	exodeoxyribonuclease V beta chain
421	 59.67	+1	436326..436568	+	80	15837026	-	XF0424	-	hypothetical protein
422	 62.66	+1	436565..438484	+	639	15837027	-	XF0425	-	exodeoxyribonuclease V alpha chain
423	 57.86	0	438577..438735	-	52	15837028	-	XF0426	-	hypothetical protein
424	 53.01	0	438786..438968	+	60	15837029	-	XF0427	-	hypothetical protein
425	 55.33	0	439143..440447	+	434	15837030	-	XF0428	-	tryptophanyl-tRNA synthetase
426	 54.17	0	440656..440847	-	63	15837031	-	XF0429	-	hypothetical protein
427	 56.29	0	440844..442577	-	577	15837032	dnaG	XF0430	-	DNA primase
428	 57.89	0	442591..442761	+	56	15837033	-	XF0431	-	hypothetical protein
429	 54.07	0	442832..443641	-	269	15837034	-	XF0432	-	BrkB protein
430	 50.56	0	443954..444400	-	148	15837035	-	XF0433	-	hypothetical protein
431	 52.78	0	444587..444802	-	71	15837036	rpsU	XF0434	-	30S ribosomal protein S21
432	 56.06	0	444975..446021	+	348	15837037	-	XF0435	-	O-sialoglycoprotein endopeptidase
433	 48.48	0	446104..446466	+	120	15837038	-	XF0436	-	dihydroneopterin aldolase
434	 49.68	0	446580..447998	+	472	15837039	-	XF0437	-	hypothetical protein
435	 43.59	-1	448138..448254	+	38	15837040	-	XF0438	-	hypothetical protein
436	 54.21	0	448471..450693	+	740	15837041	-	XF0439	-	beta-glucosidase
437	 36.95	-2	450905..451153	+	82	15837042	-	XF0440	-	hypothetical protein
438	 49.68	0	451421..451891	-	156	15837043	-	XF0441	-	ribosomal-protein-alanine acetyltransferase
439	 50.71	0	452314..453084	-	256	15837044	-	XF0442	-	phosphatidyltransferase
440	 45.10	-1	453138..453290	-	50	15837045	-	XF0443	-	hypothetical protein
441	 54.42	0	453277..453627	+	116	15837046	-	XF0444	-	hypothetical protein
442	 50.27	0	453712..455406	+	564	77747502	-	XF0445	-	prolyl-tRNA synthetase
443	 46.40	0	455556..455930	+	124	15837048	-	XF0446	-	DNA-binding protein
444	 33.83	-2	456269..456469	-	66	15837049	-	XF0447	-	hypothetical protein
445	 35.19	-2	456635..456742	+	35	15837050	-	XF0448	-	hypothetical protein
446	 44.16	-1	457038..457388	+	116	15837051	-	XF0449	-	hypothetical protein
447	 50.63	0	457972..458370	-	132	15837052	-	XF0450	-	two-component system, regulatory protein
448	 53.75	0	458451..459542	-	363	15837053	-	XF0451	-	hypothetical protein
449	 54.91	0	459602..460741	+	379	15837054	-	XF0452	-	integral membrane protease
450	 49.54	0	460738..461601	+	287	15837055	-	XF0453	-	integral membrane proteinase
451	 47.57	0	461680..461946	+	88	15837056	-	XF0454	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.