IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
283	 54.48	0	294369..294803	-	144	15836888	-	XF0283	-	hypothetical protein
284	 54.37	0	294851..295216	-	121	15836889	-	XF0284	-	hypothetical protein
285	 55.74	0	295471..296916	-	481	15836890	-	XF0285	-	heat shock protein
286	 54.74	0	297184..298080	-	298	15836891	-	XF0286	-	cell division inhibitor
287	 49.06	0	298786..300495	-	569	15836892	-	XF0287	-	putative long-chain fatty acyl CoA ligase
288	 42.86	-1	300514..300681	-	55	15836893	-	XF0288	-	hypothetical protein
289	 41.00	-1	301179..301478	+	99	15836894	-	XF0289	-	hypothetical protein
290	 56.47	0	302002..304728	-	908	15836895	-	XF0290	-	aconitate hydratase
291	 53.33	0	305165..305599	+	144	15836896	-	XF0291	-	hypothetical protein
292	 54.53	0	305596..308256	+	886	15836897	-	XF0292	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
293	 51.79	0	308408..308575	+	55	15836898	-	XF0293	-	hypothetical protein
294	 55.65	0	309111..309455	-	114	15836899	-	XF0294	-	hypothetical protein
295	 55.38	0	312391..313719	-	442	15836900	-	XF0296	-	type I restriction-modification system specificity determinant
296	 60.28	+1	315284..315565	-	93	15836901	-	XF0298	-	hypothetical protein
297	 58.52	+1	315883..316017	-	44	15836902	-	XF0299	-	hypothetical protein
298	 59.49	+1	316606..316842	+	78	15836903	-	XF0300	-	hypothetical protein
299	 52.15	0	316957..317259	+	100	15836904	-	XF0301	-	hypothetical protein
300	 54.17	0	317243..317530	+	95	15836905	-	XF0302	-	hypothetical protein
301	 54.13	0	317821..318570	+	249	15836906	tpiA	XF0303	-	triosephosphate isomerase
302	 52.63	0	318612..319010	+	132	15836907	secG	XF0304	-	preprotein translocase subunit SecG
303	 46.32	0	319215..319622	+	135	15836908	-	XF0305	-	NADH dehydrogenase subunit A
304	 53.30	0	319592..320167	+	191	15836909	-	XF0306	-	NADH dehydrogenase subunit B
305	 55.51	0	320219..320971	+	250	15836910	-	XF0307	-	NADH dehydrogenase subunit C
306	 52.22	0	320968..322275	+	435	15836911	-	XF0308	-	NADH dehydrogenase subunit D
307	 51.89	0	322272..322799	+	175	15836912	-	XF0309	-	NADH dehydrogenase subunit E
308	 54.01	0	322804..324138	+	444	15836913	-	XF0310	-	NADH-ubiquinone oxidoreductase, NQO1 subunit
309	 55.66	0	324135..326369	+	744	15836914	-	XF0311	-	NADH dehydrogenase subunit G
310	 49.20	0	326399..327457	+	352	161378174	-	XF0312	-	NADH dehydrogenase subunit H
311	 49.59	0	327458..327949	+	163	15836916	-	XF0313	-	NADH dehydrogenase subunit I
312	 52.77	0	327954..328622	+	222	15836917	-	XF0314	-	NADH dehydrogenase subunit J
313	 50.65	0	328619..328924	+	101	15836918	-	XF0315	-	NADH dehydrogenase subunit K
314	 50.84	0	328932..331073	+	713	15836919	-	XF0316	-	NADH dehydrogenase subunit L
315	 49.67	0	331095..332600	+	501	15836920	-	XF0317	-	NADH dehydrogenase subunit M
316	 51.10	0	332635..334092	+	485	15836921	-	XF0318	-	NADH dehydrogenase subunit N
317	 55.33	0	334769..335509	-	246	15836922	fabG	XF0319	-	3-ketoacyl-(acyl-carrier-protein) reductase
318	 53.90	0	335568..336899	-	443	77747498	-	XF0320	-	Mg++/citrate complex transporter
319	 55.30	0	337032..338228	-	398	15836924	-	XF0321	-	porin O precursor
320	 54.74	0	338428..339123	+	231	15836925	-	XF0322	-	two-component system, regulatory protein
321	 55.60	0	339107..340489	+	460	15836926	-	XF0323	-	two-component system, sensor protein
322	 56.10	0	340489..341529	+	346	77747499	-	XF0324	-	periplasmic iron-binding protein
323	 54.92	0	341646..341960	+	104	15836928	-	XF0325	-	transposase OrfA
324	 53.09	0	343099..343260	-	53	15836929	-	XF0327	-	hypothetical protein
325	 51.16	0	343458..343844	-	128	15836930	-	XF0328	-	hypothetical protein
326	 37.14	-2	343885..343989	-	34	15836931	-	XF0329	-	hypothetical protein
327	 48.21	0	344131..344715	+	194	15836932	-	XF0330	-	hypothetical protein
328	 48.25	0	344700..345155	-	151	15836933	-	XF0331	-	hypothetical protein
329	 45.05	-1	345344..345454	+	36	15836934	-	XF0332	-	hypothetical protein
330	 46.85	0	345727..345837	-	36	15836935	-	XF0333	-	hypothetical protein
331	 43.72	-1	345863..346045	+	60	15836936	-	XF0334	-	hypothetical protein
332	 50.25	0	346026..346226	+	66	15836937	-	XF0335	-	hypothetical protein
333	 49.15	0	346223..346399	+	58	15836938	-	XF0336	-	hypothetical protein
334	 45.95	-1	346387..346497	-	36	15836939	-	XF0337	-	hypothetical protein
335	 48.85	0	346772..347248	-	158	15836940	-	XF0338	-	SPOUT methyltransferase superfamily protein
336	 51.98	0	347467..350250	+	927	15836941	-	XF0339	-	hypothetical protein
337	 48.85	0	350618..351139	-	173	15836942	-	XF0340	-	disulfide bond formation protein B
338	 19.79	-2	351338..351433	+	31	15836943	-	XF0341	-	hypothetical protein
339	 41.27	-1	351572..351760	+	62	15836944	-	XF0342	-	hypothetical protein
340	 51.37	0	352099..353268	-	389	15836945	-	XF0343	-	outer membrane protein
341	 37.14	-2	353360..353464	-	34	15836946	-	XF0344	-	hypothetical protein
342	 36.75	-2	353543..353776	+	77	15836947	-	XF0345	-	hypothetical protein
343	 49.52	0	354295..354399	+	34	15836948	-	XF0346	-	hypothetical protein
344	 55.05	0	355141..356526	-	461	15836949	-	XF0347	-	D-lactate dehydrogenase
345	 45.75	-1	356842..356994	-	50	15836950	-	XF0348	-	hypothetical protein
346	 40.80	-1	357037..357210	+	57	15836951	-	XF0349	-	hypothetical protein
347	 44.79	-1	357217..357312	+	31	15836952	-	XF0350	-	hypothetical protein
348	 46.22	0	357360..357584	-	74	15836953	-	XF0351	-	hypothetical protein
349	 51.77	0	357824..360031	+	735	15836954	-	XF0352	-	pentaphosphate guanosine-3'-pyrophosphohydrolase
350	 55.73	0	360245..360628	+	127	15836955	-	XF0353	-	translation initiation inhibitor
351	 56.51	0	360636..362792	+	718	15836956	-	XF0354	-	ATP-dependent DNA helicase
352	 46.26	0	362867..363013	+	48	15836957	-	XF0355	-	hypothetical protein
353	 51.04	0	363376..364578	+	400	15836958	-	XF0356	-	cytochrome P-450 hydroxylase
354	 46.82	0	365164..366327	+	387	15836959	-	XF0357	-	hypothetical protein
355	 46.55	0	367442..368599	+	385	15836960	-	XF0358	-	hypothetical protein
356	 53.55	0	369020..369202	+	60	15836961	-	XF0359	-	hypothetical protein
357	 50.00	0	369172..369285	+	37	15836962	-	XF0360	-	hypothetical protein
358	 50.71	0	369297..370712	+	471	15836963	-	XF0361	-	replicative DNA helicase
359	 48.15	0	370914..371237	-	107	15836964	-	XF0362	-	hypothetical protein
360	 52.54	0	371375..372103	+	242	15836965	-	XF0363	-	hypothetical protein
361	 42.49	-1	372111..372383	-	90	15836966	-	XF0364	-	hypothetical protein
362	 49.51	0	372813..373016	-	67	15836967	-	XF0365	-	hypothetical protein
363	 56.39	0	373267..374220	-	317	15836968	-	XF0366	-	ribokinase
364	 52.06	0	374531..375694	+	387	15836969	-	XF0367	-	voltage-gated potassium channel beta subunit
365	 51.72	0	375998..378493	-	831	15836970	-	XF0368	-	penicillin binding protein 1A
366	 50.47	0	378548..379726	+	392	15836971	-	XF0369	-	fimbrial assembly membrane protein
367	 49.02	0	379726..380388	+	220	15836972	-	XF0370	-	fimbrial assembly membrane protein
368	 45.14	-1	380388..381056	+	222	15836973	-	XF0371	-	fimbrial assembly membrane protein
369	 49.91	0	381053..381583	+	176	15836974	-	XF0372	-	fimbrial assembly protein
370	 48.64	0	381583..383496	+	637	15836975	-	XF0373	-	fimbrial assembly protein
371	 47.27	0	384864..385631	+	255	15836976	-	XF0374	-	hypothetical protein
372	 49.91	0	385628..387286	+	552	15836977	-	XF0375	-	inner membrane protein
373	 43.21	-1	387598..387759	-	53	15836978	-	XF0376	-	hypothetical protein
374	 49.46	0	387900..389108	-	402	15836979	-	XF0377	-	cytochrome P450-like enzyme
375	 51.77	0	389990..390694	-	234	15836980	thiE	XF0378	-	thiamine-phosphate pyrophosphorylase
376	 56.32	0	390696..390869	+	57	15836981	-	XF0379	-	rubredoxin
377	 27.98	-2	391003..391170	-	55	15836982	-	XF0380	-	hypothetical protein
378	 51.66	0	391356..393941	+	861	15836983	-	XF0381	-	ATP-dependent Clp protease subunit
379	 56.28	0	394483..394665	-	60	15836984	-	XF0382	-	hypothetical protein
380	 46.88	0	394790..395269	-	159	15836985	-	XF0383	-	hypothetical protein
381	 50.83	0	395356..397401	+	681	15836986	-	XF0384	-	outer membrane hemin receptor
382	 45.26	-1	397940..398308	-	122	15836987	-	XF0385	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.