IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
252	 56.80	0	262848..264692	-	614	15836857	-	XF0252	-	ATP-dependent RNA helicase
253	 55.52	0	264992..265942	-	316	15836858	-	XF0253	-	electron transfer flavoprotein alpha subunit
254	 55.73	0	265939..266688	-	249	15836859	-	XF0254	-	electron transfer flavoprotein beta subunit
255	 56.03	0	266904..267965	+	353	15836860	-	XF0255	-	dTDP-glucose 4,6-dehydratase
256	 54.17	0	268026..268913	+	295	15836861	-	XF0256	-	glucose-1-phosphate thymidylyltransferase
257	 54.12	0	268910..269467	+	185	15836862	-	XF0257	-	dTDP-4-dehydrorhamnose 3,5-epimerase
258	 60.51	+1	269464..270372	+	302	15836863	-	XF0258	-	dTDP-4-keto-L-rhamnose reductase
259	 57.35	0	270540..271988	-	482	15836864	-	XF0259	-	phosphomannose isomerase-GDP-mannose pyrophosphorylase
260	 55.42	0	272001..273503	-	500	15836865	-	XF0260	-	phosphoglucomutase/phosphomannomutase
261	 47.76	0	273547..273747	+	66	15836866	-	XF0261	-	hypothetical protein
262	 52.75	0	273932..274240	-	102	15836867	-	XF0262	-	colicin V precursor
263	 50.81	0	274558..274866	+	102	15836868	-	XF0263	-	colicin V precursor
264	 51.78	0	275429..275737	+	102	15836869	-	XF0264	-	hypothetical protein
265	 41.89	-1	275849..276070	+	73	15836870	-	XF0265	-	hypothetical protein
266	 52.86	0	277679..277975	-	98	15836871	-	XF0266	-	hypothetical protein
267	 56.07	0	277708..280707	+	999	77747497	-	XF0267	-	serine protease
268	 49.58	0	281182..282369	-	395	15836873	-	XF0268	-	hypothetical protein
269	 49.55	0	282416..282526	+	36	15836874	-	XF0269	-	hypothetical protein
270	 48.43	0	282659..282817	-	52	15836875	-	XF0270	-	hypothetical protein
271	 34.38	-2	283042..283137	+	31	15836876	-	XF0271	-	hypothetical protein
272	 53.30	0	283275..283850	-	191	15836877	-	XF0272	-	hypothetical protein
273	 48.65	0	283897..284007	-	36	15836878	-	XF0273	-	hypothetical protein
274	 55.84	0	284260..285543	-	427	15836879	-	XF0274	-	6-phosphofructokinase
275	 53.72	0	285656..286219	+	187	161378175	adk	XF0275	-	adenylate kinase
276	 57.27	0	286513..287928	+	471	15836881	-	XF0276	-	UDP-N-acetylmuramate-L-alanine ligase
277	 57.04	0	288196..290325	-	709	15836882	-	XF0277	-	hypothetical protein
278	 55.76	0	290340..290999	+	219	15836883	-	XF0278	-	serine/threonine protein kinase
279	 54.79	0	291103..291321	+	72	15836884	-	XF0279	-	hypothetical protein
280	 59.04	+1	291312..292766	-	484	15836885	-	XF0280	-	leucine aminopeptidase
281	 52.56	0	292803..293972	-	389	15836886	-	XF0281	-	transport protein
282	 49.08	0	293992..294372	-	126	15836887	-	XF0282	-	hypothetical protein
283	 54.48	0	294369..294803	-	144	15836888	-	XF0283	-	hypothetical protein
284	 54.37	0	294851..295216	-	121	15836889	-	XF0284	-	hypothetical protein
285	 55.74	0	295471..296916	-	481	15836890	-	XF0285	-	heat shock protein
286	 54.74	0	297184..298080	-	298	15836891	-	XF0286	-	cell division inhibitor
287	 49.06	0	298786..300495	-	569	15836892	-	XF0287	-	putative long-chain fatty acyl CoA ligase
288	 42.86	-1	300514..300681	-	55	15836893	-	XF0288	-	hypothetical protein
289	 41.00	-1	301179..301478	+	99	15836894	-	XF0289	-	hypothetical protein
290	 56.47	0	302002..304728	-	908	15836895	-	XF0290	-	aconitate hydratase
291	 53.33	0	305165..305599	+	144	15836896	-	XF0291	-	hypothetical protein
292	 54.53	0	305596..308256	+	886	15836897	-	XF0292	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
293	 51.79	0	308408..308575	+	55	15836898	-	XF0293	-	hypothetical protein
294	 55.65	0	309111..309455	-	114	15836899	-	XF0294	-	hypothetical protein
295	 55.38	0	312391..313719	-	442	15836900	-	XF0296	-	type I restriction-modification system specificity determinant
296	 60.28	+1	315284..315565	-	93	15836901	-	XF0298	-	hypothetical protein
297	 58.52	+1	315883..316017	-	44	15836902	-	XF0299	-	hypothetical protein
298	 59.49	+1	316606..316842	+	78	15836903	-	XF0300	-	hypothetical protein
299	 52.15	0	316957..317259	+	100	15836904	-	XF0301	-	hypothetical protein
300	 54.17	0	317243..317530	+	95	15836905	-	XF0302	-	hypothetical protein
301	 54.13	0	317821..318570	+	249	15836906	tpiA	XF0303	-	triosephosphate isomerase
302	 52.63	0	318612..319010	+	132	15836907	secG	XF0304	-	preprotein translocase subunit SecG
303	 46.32	0	319215..319622	+	135	15836908	-	XF0305	-	NADH dehydrogenase subunit A
304	 53.30	0	319592..320167	+	191	15836909	-	XF0306	-	NADH dehydrogenase subunit B
305	 55.51	0	320219..320971	+	250	15836910	-	XF0307	-	NADH dehydrogenase subunit C
306	 52.22	0	320968..322275	+	435	15836911	-	XF0308	-	NADH dehydrogenase subunit D
307	 51.89	0	322272..322799	+	175	15836912	-	XF0309	-	NADH dehydrogenase subunit E
308	 54.01	0	322804..324138	+	444	15836913	-	XF0310	-	NADH-ubiquinone oxidoreductase, NQO1 subunit
309	 55.66	0	324135..326369	+	744	15836914	-	XF0311	-	NADH dehydrogenase subunit G
310	 49.20	0	326399..327457	+	352	161378174	-	XF0312	-	NADH dehydrogenase subunit H
311	 49.59	0	327458..327949	+	163	15836916	-	XF0313	-	NADH dehydrogenase subunit I
312	 52.77	0	327954..328622	+	222	15836917	-	XF0314	-	NADH dehydrogenase subunit J
313	 50.65	0	328619..328924	+	101	15836918	-	XF0315	-	NADH dehydrogenase subunit K
314	 50.84	0	328932..331073	+	713	15836919	-	XF0316	-	NADH dehydrogenase subunit L
315	 49.67	0	331095..332600	+	501	15836920	-	XF0317	-	NADH dehydrogenase subunit M
316	 51.10	0	332635..334092	+	485	15836921	-	XF0318	-	NADH dehydrogenase subunit N
317	 55.33	0	334769..335509	-	246	15836922	fabG	XF0319	-	3-ketoacyl-(acyl-carrier-protein) reductase
318	 53.90	0	335568..336899	-	443	77747498	-	XF0320	-	Mg++/citrate complex transporter
319	 55.30	0	337032..338228	-	398	15836924	-	XF0321	-	porin O precursor
320	 54.74	0	338428..339123	+	231	15836925	-	XF0322	-	two-component system, regulatory protein
321	 55.60	0	339107..340489	+	460	15836926	-	XF0323	-	two-component system, sensor protein
322	 56.10	0	340489..341529	+	346	77747499	-	XF0324	-	periplasmic iron-binding protein
323	 54.92	0	341646..341960	+	104	15836928	-	XF0325	-	transposase OrfA
324	 53.09	0	343099..343260	-	53	15836929	-	XF0327	-	hypothetical protein
325	 51.16	0	343458..343844	-	128	15836930	-	XF0328	-	hypothetical protein
326	 37.14	-2	343885..343989	-	34	15836931	-	XF0329	-	hypothetical protein
327	 48.21	0	344131..344715	+	194	15836932	-	XF0330	-	hypothetical protein
328	 48.25	0	344700..345155	-	151	15836933	-	XF0331	-	hypothetical protein
329	 45.05	-1	345344..345454	+	36	15836934	-	XF0332	-	hypothetical protein
330	 46.85	0	345727..345837	-	36	15836935	-	XF0333	-	hypothetical protein
331	 43.72	-1	345863..346045	+	60	15836936	-	XF0334	-	hypothetical protein
332	 50.25	0	346026..346226	+	66	15836937	-	XF0335	-	hypothetical protein
333	 49.15	0	346223..346399	+	58	15836938	-	XF0336	-	hypothetical protein
334	 45.95	-1	346387..346497	-	36	15836939	-	XF0337	-	hypothetical protein
335	 48.85	0	346772..347248	-	158	15836940	-	XF0338	-	SPOUT methyltransferase superfamily protein
336	 51.98	0	347467..350250	+	927	15836941	-	XF0339	-	hypothetical protein
337	 48.85	0	350618..351139	-	173	15836942	-	XF0340	-	disulfide bond formation protein B
338	 19.79	-2	351338..351433	+	31	15836943	-	XF0341	-	hypothetical protein
339	 41.27	-1	351572..351760	+	62	15836944	-	XF0342	-	hypothetical protein
340	 51.37	0	352099..353268	-	389	15836945	-	XF0343	-	outer membrane protein
341	 37.14	-2	353360..353464	-	34	15836946	-	XF0344	-	hypothetical protein
342	 36.75	-2	353543..353776	+	77	15836947	-	XF0345	-	hypothetical protein
343	 49.52	0	354295..354399	+	34	15836948	-	XF0346	-	hypothetical protein
344	 55.05	0	355141..356526	-	461	15836949	-	XF0347	-	D-lactate dehydrogenase
345	 45.75	-1	356842..356994	-	50	15836950	-	XF0348	-	hypothetical protein
346	 40.80	-1	357037..357210	+	57	15836951	-	XF0349	-	hypothetical protein
347	 44.79	-1	357217..357312	+	31	15836952	-	XF0350	-	hypothetical protein
348	 46.22	0	357360..357584	-	74	15836953	-	XF0351	-	hypothetical protein
349	 51.77	0	357824..360031	+	735	15836954	-	XF0352	-	pentaphosphate guanosine-3'-pyrophosphohydrolase
350	 55.73	0	360245..360628	+	127	15836955	-	XF0353	-	translation initiation inhibitor
351	 56.51	0	360636..362792	+	718	15836956	-	XF0354	-	ATP-dependent DNA helicase
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.