IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2628	 48.67	0	2528514..2529452	-	312	15839233	-	XF2644	-	ribose-phosphate pyrophosphokinase
2629	 54.07	0	2529683..2530579	-	298	15839234	-	XF2645	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
2630	 56.53	0	2530558..2531208	-	216	15839235	lolB	XF2646	-	outer membrane lipoprotein LolB
2631	 54.64	0	2531205..2532884	-	559	15839236	-	XF2647	-	hypothetical protein
2632	 56.89	0	2532951..2534249	+	432	15839237	hemA	XF2648	-	glutamyl-tRNA reductase
2633	 56.63	0	2534227..2535312	+	361	15839238	prfA	XF2649	-	peptide chain release factor 1
2634	 54.64	0	2535339..2535521	-	60	15839239	-	XF2650	-	hypothetical protein
2635	 58.16	0	2535774..2537948	-	724	77747618	-	XF2651	-	23S rRNA m(2)G2445 methyltransferase
2636	 53.99	0	2537992..2538204	+	70	15839241	-	XF2652	-	hypothetical protein
2637	 50.98	0	2538178..2538330	-	50	15839242	-	XF2653	-	hypothetical protein
2638	 58.52	+1	2538305..2538832	-	175	15839243	-	XF2654	-	hypothetical protein
2639	 59.02	+1	2538858..2539040	-	60	15839244	-	XF2655	-	hypothetical protein
2640	 59.82	+1	2539018..2539587	+	189	15839245	-	XF2656	-	hypothetical protein
2641	 53.85	0	2539675..2539986	+	103	15839246	-	XF2657	-	hypothetical protein
2642	 53.56	0	2539983..2540249	-	88	15839247	-	XF2658	-	hypothetical protein
2643	 54.10	0	2540433..2541140	+	235	15839248	-	XF2659	-	hypothetical protein
2644	 51.13	0	2541146..2541454	+	102	15839249	-	XF2660	-	hypothetical protein
2645	 52.67	0	2541476..2541718	-	80	15839250	-	XF2661	-	hypothetical protein
2646	 53.33	0	2541771..2542130	+	119	15839251	-	XF2662	-	hypothetical protein
2647	 51.01	0	2542232..2543317	+	361	15839252	-	XF2663	-	hypothetical protein
2648	 46.04	0	2543314..2543982	+	222	15839253	-	XF2664	-	hypothetical protein
2649	 40.33	-1	2544045..2544287	-	80	15839254	-	XF2665	-	hypothetical protein
2650	 53.60	0	2544540..2545136	-	198	15839255	-	XF2666	-	hypothetical protein
2651	 50.81	0	2545135..2545380	+	81	15839256	-	XF2667	-	hypothetical protein
2652	 55.56	0	2545458..2545592	+	44	15839257	-	XF2668	-	hypothetical protein
2653	 50.79	0	2545849..2546163	-	104	15839258	-	XF2669	-	hypothetical protein
2654	 50.39	0	2546278..2546406	-	42	15839259	-	XF2670	-	hypothetical protein
2655	 55.84	0	2546495..2547676	-	393	15839260	-	XF2671	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
2656	 56.35	0	2547673..2548176	-	167	15839261	-	XF2672	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
2657	 50.00	0	2548239..2548508	+	89	15839262	-	XF2673	-	hypothetical protein
2658	 48.81	0	2548897..2549064	+	55	15839263	-	XF2674	-	hypothetical protein
2659	 53.95	0	2549045..2550082	+	345	15839264	-	XF2675	-	hypothetical protein
2660	 37.63	-2	2550292..2550384	-	30	15839265	-	XF2676	-	hypothetical protein
2661	 39.61	-2	2551143..2553308	-	721	15839266	-	XF2677	-	L-ascorbate oxidase
2662	 30.89	-2	2553538..2553660	-	40	15839267	-	XF2678	-	hypothetical protein
2663	 52.10	0	2554533..2555891	-	452	15839268	-	XF2679	-	virulence protein
2664	 51.40	0	2556133..2558175	-	680	15839269	-	XF2680	-	ATP-dependent DNA helicase
2665	 43.48	-1	2558586..2558723	-	45	15839270	-	XF2681	-	hypothetical protein
2666	 51.05	0	2558938..2560551	-	537	15839271	mdoD	XF2682	-	glucan biosynthesis protein D
2667	 40.91	-1	2560574..2560705	-	43	15839272	-	XF2683	-	hypothetical protein
2668	 48.59	0	2560964..2561140	-	58	15839273	-	XF2684	-	hypothetical protein
2669	 50.74	0	2561252..2563153	-	633	15839274	-	XF2685	-	protease IV
2670	 51.21	0	2563236..2564645	-	469	15839275	-	XF2686	-	multidrug efflux protein
2671	 56.63	0	2564919..2565446	-	175	15839276	-	XF2687	-	hypothetical protein
2672	 54.45	0	2565485..2566450	-	321	15839277	-	XF2688	-	hypothetical protein
2673	 54.68	0	2566888..2569089	+	733	15839278	-	XF2689	-	primosome assembly protein PriA
2674	 46.83	0	2569988..2570113	-	41	15839279	-	XF2690	-	hypothetical protein
2675	 47.73	0	2570566..2571447	-	293	15839280	-	XF2691	-	RNA polymerase factor sigma-32
2676	 51.05	0	2571566..2572327	-	253	77747619	-	XF2692	-	uracil-DNA glycosylase
2677	 50.06	0	2572333..2573127	-	264	15839282	-	XF2693	-	hypothetical protein
2678	 51.76	0	2573195..2574133	-	312	15839283	-	XF2694	-	cell division protein
2679	 50.07	0	2574130..2574816	-	228	15839284	-	XF2695	-	ABC transporter ATP-binding protein
2680	 51.99	0	2574884..2576518	-	544	15839285	-	XF2696	-	ATP-dependent RNA helicase RhlB
2681	 49.02	0	2576558..2576659	+	33	15839286	-	XF2697	-	hypothetical protein
2682	 45.91	-1	2576711..2577052	+	113	15839287	-	XF2698	-	thioredoxin
2683	 49.80	0	2577677..2578957	+	426	77747620	rho	XF2699	-	transcription termination factor Rho
2684	 49.93	0	2579537..2581819	-	760	15839289	-	XF2700	-	isocitrate dehydrogenase
2685	 48.40	0	2581796..2582107	+	103	15839290	-	XF2701	-	hypothetical protein
2686	 49.40	0	2582340..2582507	+	55	15839291	-	XF2702	-	hypothetical protein
2687	 50.51	0	2582536..2582733	+	65	15839292	-	XF2703	-	hypothetical protein
2688	 53.31	0	2582849..2584375	-	508	15839293	-	XF2704	-	carboxyl-terminal protease
2689	 54.61	0	2584456..2585823	-	455	15839294	-	XF2705	-	hypothetical protein
2690	 53.08	0	2585963..2587684	+	573	15839295	-	XF2706	-	hypothetical protein
2691	 47.46	0	2587664..2587840	-	58	15839296	-	XF2707	-	hypothetical protein
2692	 50.23	0	2588067..2589137	+	356	15839297	-	XF2708	-	endo-1,4-beta-glucanase
2693	 57.04	0	2590119..2591603	-	494	15839298	gltD	XF2709	-	glutamate synthase subunit beta
2694	 55.01	0	2591744..2596213	-	1489	15839299	gltB	XF2710	-	glutamate synthase subunit alpha
2695	 52.00	0	2596200..2596499	+	99	15839300	-	XF2711	-	hypothetical protein
2696	 59.26	+1	2596613..2597530	+	305	15839301	-	XF2712	-	pyrroline-5-carboxylate reductase
2697	 52.59	0	2598251..2600857	+	868	15839302	-	XF2713	-	hypothetical protein
2698	 56.94	0	2600944..2602341	+	465	15839303	-	XF2714	-	alpha-L-fucosidase
2699	 56.49	0	2603746..2604315	+	189	15839304	-	XF2715	-	hypothetical protein
2700	 54.32	0	2604406..2605296	+	296	15839305	-	XF2716	-	ketoreductase
2701	 56.84	0	2605684..2605968	+	94	15839306	-	XF2717	-	hypothetical protein
2702	 48.97	0	2606073..2606462	-	129	15839307	-	XF2718	-	hypothetical protein
2703	 50.54	0	2606518..2606610	-	30	15839308	-	XF2719	-	hypothetical protein
2704	 57.32	0	2606616..2606861	+	81	15839309	-	XF2720	-	hypothetical protein
2705	 60.07	+1	2606910..2609987	-	1025	15839310	-	XF2721	-	type I restriction-modification system endonuclease
2706	 62.40	+1	2609968..2611374	-	468	15839311	-	XF2722	-	type I restriction-modification system specificity determinant
2707	 61.80	+1	2611371..2612645	-	424	15839312	-	XF2723	-	type I restriction-modification system DNA methylase
2708	 59.97	+1	2612646..2613794	-	382	15839313	-	XF2724	-	type I restriction-modification system
2709	 52.19	0	2614467..2617451	-	994	77747621	-	XF2725	-	type I restriction-modification system endonuclease
2710	 49.19	0	2617487..2618716	-	409	15839315	-	XF2726	-	type I restriction-modification system specificity determinant
2711	 48.54	0	2618691..2618861	+	56	15839316	-	XF2727	-	hypothetical protein
2712	 52.47	0	2618983..2620560	-	525	15839317	-	XF2728	-	type I restriction-modification system DNA methylase
2713	 52.50	0	2620692..2620931	-	79	15839318	-	XF2729	-	hypothetical protein
2714	 47.98	0	2621041..2621682	+	213	15839319	-	XF2730	-	amino acid transporter
2715	 47.83	0	2621690..2621896	+	68	15839320	-	XF2731	-	hypothetical protein
2716	 62.61	+1	2622035..2622478	-	147	15839321	-	XF2732	-	hypothetical protein
2717	 60.40	+1	2622640..2624172	+	510	15839322	-	XF2733	-	hypothetical protein
2718	 59.39	+1	2624859..2628293	+	1144	15839323	-	XF2734	-	hypothetical protein
2719	 63.68	+1	2628290..2629495	+	401	15839324	-	XF2735	-	hypothetical protein
2720	 59.63	+1	2629511..2629780	+	89	15839325	-	XF2736	-	hypothetical protein
2721	 61.69	+1	2629798..2629998	-	66	15839326	-	XF2737	-	hypothetical protein
2722	 61.43	+1	2630015..2630434	-	139	15839327	-	XF2738	-	hypothetical protein
2723	 56.68	0	2630677..2633811	-	1044	77747622	-	XF2739	-	type I restriction-modification system endonuclease
2724	 63.35	+1	2633931..2634563	-	210	15839329	-	XF2740	-	hypothetical protein
2725	 51.17	0	2634560..2635798	-	412	15839330	-	XF2741	-	type I restriction-modification system specificity determinant
2726	 59.23	+1	2635782..2637341	-	519	15839331	-	XF2742	-	type I restriction-modification system DNA methylase
2727	 56.55	0	2637356..2637523	+	55	15839332	-	XF2743	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.