IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2531	 52.49	0	2421266..2422429	+	387	15839136	sucC	XF2547	-	succinyl-CoA synthetase subunit beta
2532	 51.43	0	2422458..2423330	+	290	15839137	-	XF2548	-	succinyl-CoA synthetase subunit alpha
2533	 61.04	+1	2423722..2424201	+	159	15839138	-	XF2549	-	hypothetical protein
2534	 55.69	0	2424313..2426106	-	597	15839139	-	XF2550	-	outer membrane hemolysin activator protein
2535	 58.99	+1	2426592..2429093	-	833	77747611	-	XF2551	-	hypothetical protein
2536	 55.37	0	2429336..2432017	-	893	15839141	-	XF2552	-	DNA gyrase subunit A
2537	 59.81	+1	2432210..2433274	-	354	15839142	mtnA	XF2553	-	methylthioribose-1-phosphate isomerase
2538	 55.94	0	2433431..2434120	-	229	15839143	-	XF2554	-	hypothetical protein
2539	 57.84	0	2434326..2435231	-	301	15839144	-	XF2555	-	lysyl-tRNA synthetase
2540	 57.97	0	2435757..2438252	-	831	77747612	ligA	XF2556	-	NAD-dependent DNA ligase LigA
2541	 55.05	0	2438999..2439730	-	243	15839146	-	XF2557	-	cell division protein ZipA
2542	 57.56	0	2439789..2443292	-	1167	15839147	-	XF2558	-	chromosome segregation protein
2543	 54.44	0	2443510..2443959	-	149	15839148	rplI	XF2559	-	50S ribosomal protein L9
2544	 45.02	-1	2444117..2444347	-	76	15839149	rpsR	XF2560	-	30S ribosomal protein S18
2545	 50.69	0	2444359..2444790	-	143	15839150	rpsF	XF2561	-	30S ribosomal protein S6
2546	 54.87	0	2445030..2445368	-	112	15839151	-	XF2562	-	hypothetical protein
2547	 54.53	0	2445579..2446979	+	466	15839152	asnC	XF2563	-	asparaginyl-tRNA synthetase
2548	 55.56	0	2446954..2447106	+	50	15839153	-	XF2564	-	hypothetical protein
2549	 45.03	-1	2447083..2447253	-	56	15839154	-	XF2565	-	hypothetical protein
2550	 43.50	-1	2447508..2447684	-	58	15839155	-	XF2566	-	hypothetical protein
2551	 47.64	0	2447778..2448581	+	267	15839156	-	XF2567	-	ABC transporter permease protein
2552	 49.26	0	2448588..2449328	+	246	15839157	-	XF2568	-	ABC transporter ATP-binding protein
2553	 52.78	0	2449366..2449581	-	71	15839158	-	XF2569	-	hypothetical protein
2554	 48.51	0	2449643..2449978	+	111	15839159	-	XF2570	-	hypothetical protein
2555	 56.16	0	2450268..2451323	+	351	77747613	-	XF2571	-	dihydroorotate dehydrogenase 2
2556	 56.06	0	2451320..2452375	+	351	15839161	murB	XF2572	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2557	 55.24	0	2452369..2453304	+	311	15839162	-	XF2573	-	hypothetical protein
2558	 54.09	0	2453314..2453997	-	227	15839163	-	XF2574	-	hypothetical protein
2559	 55.69	0	2453978..2455243	-	421	77747614	ispG	XF2575	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2560	 51.52	0	2455273..2455470	-	65	15839165	-	XF2576	-	hypothetical protein
2561	 56.24	0	2455465..2456682	+	405	15839166	-	XF2577	-	two-component system, sensor protein
2562	 55.79	0	2456679..2457257	+	192	15839167	-	XF2578	-	two-component system, regulatory protein
2563	 49.94	0	2457517..2458395	-	292	161378157	tsf	XF2579	-	elongation factor Ts
2564	 53.93	0	2458584..2459384	-	266	15839169	rpsB	XF2580	-	30S ribosomal protein S2
2565	 53.92	0	2459969..2460376	+	135	15839170	-	XF2581	-	hypothetical protein
2566	 54.63	0	2460403..2462097	+	564	15839171	-	XF2582	-	ABC transporter ATP-binding protein
2567	 53.59	0	2462080..2462232	-	50	15839172	-	XF2583	-	hypothetical protein
2568	 48.45	0	2463046..2463303	-	85	15839173	-	XF2584	-	hypothetical protein
2569	 54.49	0	2463660..2464316	+	218	15839174	-	XF2585	-	protein-L-isoaspartate O-methyltransferase
2570	 54.01	0	2464339..2465697	+	452	15839175	-	XF2586	-	outer membrane export factor
2571	 47.30	0	2465769..2465990	+	73	15839176	-	XF2587	-	hypothetical protein
2572	 52.99	0	2466336..2467088	-	250	15839177	-	XF2588	-	UDP-2,3-diacylglucosamine hydrolase
2573	 45.02	-1	2467210..2467440	+	76	15839178	-	XF2589	-	hypothetical protein
2574	 55.40	0	2467821..2469347	-	508	15839179	-	XF2590	-	exopolyphosphatase
2575	 52.12	0	2469416..2471512	-	698	15839180	-	XF2591	-	polyphosphate kinase
2576	 52.27	0	2471617..2472957	-	446	15839181	-	XF2592	-	two-component system, sensor protein
2577	 51.81	0	2472975..2473775	-	266	15839182	-	XF2593	-	two-component system, regulatory protein
2578	 54.45	0	2473753..2475381	-	542	77747615	-	XF2594	-	hypothetical protein
2579	 50.14	0	2475449..2475805	+	118	15839184	-	XF2595	-	glutaredoxin
2580	 52.58	0	2476491..2477498	+	335	15839185	-	XF2596	-	isocitrate dehydrogenase
2581	 51.08	0	2477800..2478447	-	215	15839186	-	XF2597	-	hypothetical protein
2582	 52.68	0	2479082..2479603	+	173	15839187	-	XF2598	-	6-O-methylguanine-DNA methyltransferase
2583	 54.45	0	2479632..2480933	+	433	15839188	-	XF2599	-	phosphodiesterase-nucleotide pyrophosphatase precursor
2584	 42.59	-1	2481107..2481322	+	71	15839189	-	XF2600	-	hypothetical protein
2585	 52.16	0	2481488..2481811	+	107	15839190	-	XF2601	-	ferredoxin
2586	 54.02	0	2481857..2483350	-	497	15839191	-	XF2602	-	hypothetical protein
2587	 53.11	0	2483467..2483997	-	176	15839192	-	XF2603	-	hypothetical protein
2588	 51.00	0	2484156..2484506	+	116	15839193	phhB	XF2604	-	pterin-4-alpha-carbinolamine dehydratase
2589	 55.07	0	2484514..2484927	+	137	15839194	-	XF2605	-	TonB protein
2590	 53.58	0	2485339..2486331	-	330	15839195	-	XF2606	-	pseudouridylate synthase
2591	 50.43	0	2486732..2490130	+	1132	15839196	-	XF2607	-	ribonuclease E
2592	 46.46	0	2490561..2491223	-	220	15839197	-	XF2608	-	LuxR/UhpA family transcriptional regulator
2593	 49.89	0	2491473..2492372	-	299	15839198	-	XF2609	-	hypothetical protein
2594	 39.81	-1	2492565..2492672	-	35	15839199	-	XF2610	-	hypothetical protein
2595	 45.76	-1	2493039..2493368	+	109	15839200	-	XF2611	-	hypothetical protein
2596	 43.56	-1	2493748..2494011	-	87	15839201	-	XF2612	-	hypothetical protein
2597	 42.00	-1	2493990..2494139	-	49	15839202	-	XF2613	-	hypothetical protein
2598	 49.51	0	2494416..2495027	-	203	15839203	-	XF2614	-	superoxide dismutase
2599	 52.38	0	2495269..2495709	+	146	77747616	-	XF2615	-	ribonuclease
2600	 56.35	0	2495706..2496122	+	138	15839205	-	XF2616	-	hypothetical protein
2601	 52.19	0	2496177..2498048	-	623	15839206	-	XF2617	-	ABC transporter ATP-binding protein
2602	 46.24	0	2498117..2498302	+	61	15839207	-	XF2618	-	hypothetical protein
2603	 54.29	0	2498328..2499887	-	519	15839208	-	XF2619	-	hypothetical protein
2604	 46.86	0	2499868..2500074	-	68	15839209	-	XF2620	-	hypothetical protein
2605	 42.06	-1	2500050..2500175	+	41	15839210	-	XF2621	-	hypothetical protein
2606	 45.74	-1	2500290..2500547	-	85	15839211	-	XF2622	-	temperature acclimation protein B
2607	 46.88	0	2501062..2501157	-	31	15839212	-	XF2623	-	hypothetical protein
2608	 48.09	0	2502027..2504099	+	690	15839213	-	XF2624	-	hypothetical protein
2609	 48.51	0	2504341..2505210	-	289	15839214	-	XF2625	-	heat shock protein HtpX
2610	 37.96	-2	2505837..2505944	-	35	15839215	-	XF2626	-	hypothetical protein
2611	 41.50	-1	2506257..2506403	+	48	15839216	-	XF2627	-	hypothetical protein
2612	 50.88	0	2506923..2508113	-	396	15839217	tuf	XF2628	-	elongation factor Tu
2613	 47.12	0	2508220..2510337	-	705	15839218	-	XF2629	-	elongation factor G
2614	 47.44	0	2510474..2510941	-	155	15839219	-	XF2630	-	30S ribosomal protein S7
2615	 50.67	0	2510957..2511331	-	124	77747617	rpsL	XF2631	-	30S ribosomal protein S12
2616	 46.77	0	2511584..2515876	-	1430	15839221	-	XF2632	-	DNA-directed RNA polymerase subunit beta'
2617	 46.77	0	2515906..2520072	-	1388	15839222	rpoB	XF2633	-	DNA-directed RNA polymerase subunit beta
2618	 46.07	0	2520307..2520675	-	122	15839223	rplL	XF2634	-	50S ribosomal protein L7/L12
2619	 46.59	0	2520730..2521257	-	175	161378156	rplJ	XF2635	-	50S ribosomal protein L10
2620	 44.64	-1	2521760..2522458	-	232	15839225	rplA	XF2636	-	50S ribosomal protein L1
2621	 48.25	0	2522463..2522891	-	142	161378155	rplK	XF2637	-	50S ribosomal protein L11
2622	 46.77	0	2523088..2523645	-	185	15839227	nusG	XF2638	-	transcription antitermination protein NusG
2623	 43.63	-1	2523659..2524066	-	135	15839228	secE	XF2639	-	preprotein translocase subunit SecE
2624	 50.88	0	2524305..2525495	-	396	15839229	tuf	XF2640	-	elongation factor Tu
2625	 49.27	0	2526040..2527131	-	363	15839230	-	XF2641	-	translation-associated GTPase
2626	 49.22	0	2527145..2527723	-	192	15839231	-	XF2642	-	peptidyl-tRNA hydrolase
2627	 50.40	0	2527779..2528405	-	208	15839232	-	XF2643	-	50S ribosomal protein L25/general stress protein Ctc
2628	 48.67	0	2528514..2529452	-	312	15839233	-	XF2644	-	ribose-phosphate pyrophosphokinase
2629	 54.07	0	2529683..2530579	-	298	15839234	-	XF2645	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
2630	 56.53	0	2530558..2531208	-	216	15839235	lolB	XF2646	-	outer membrane lipoprotein LolB
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.