IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2469	 53.53	0	2366215..2366724	-	169	15839074	-	XF2484	-	hypothetical protein
2470	 57.93	0	2366724..2367914	-	396	15839075	-	XF2485	-	phage tail sheath protein
2471	 58.51	+1	2367967..2369559	-	530	77747606	-	XF2486	-	hypothetical protein
2472	 60.04	+1	2369567..2370124	-	185	15839077	-	XF2487	-	phage-related tail protein
2473	 59.28	+1	2370117..2371010	-	297	15839078	-	XF2488	-	phage-related baseplate assembly protein
2474	 65.58	+2	2371010..2371285	-	91	15839079	-	XF2489	-	phage-related baseplate assembly protein
2475	 50.83	0	2371566..2371868	+	100	15839080	-	XF2490	-	hypothetical protein
2476	 52.49	0	2371871..2372272	+	133	15839081	-	XF2491	-	hypothetical protein
2477	 65.31	+2	2372341..2372928	-	195	15839082	-	XF2492	-	phage-related baseplate assembly protein
2478	 61.33	+1	2372925..2373467	-	180	15839083	-	XF2493	-	hypothetical protein
2479	 59.96	+1	2373443..2373964	-	173	15839084	-	XF2494	-	hypothetical protein
2480	 56.88	0	2373961..2374287	-	108	15839085	-	XF2495	-	hypothetical protein
2481	 61.69	+1	2374284..2374544	-	86	15839086	-	XF2496	-	hypothetical protein
2482	 59.86	+1	2374562..2376442	-	626	15839087	-	XF2497	-	hypothetical protein
2483	 57.41	0	2376426..2378024	-	532	15839088	-	XF2498	-	phage-related portal protein
2484	 58.65	+1	2378021..2378569	-	182	15839089	-	XF2499	-	hypothetical protein
2485	 58.52	+1	2378573..2380315	-	580	15839090	-	XF2500	-	phage-related terminase large subunit
2486	 55.67	0	2380518..2381099	-	193	15839091	-	XF2501	-	hypothetical protein
2487	 57.71	0	2381456..2381935	-	159	15839092	-	XF2502	-	hypothetical protein
2488	 54.81	0	2381907..2382218	-	103	15839093	-	XF2503	-	hypothetical protein
2489	 54.34	0	2382229..2382723	-	164	15839094	-	XF2504	-	hypothetical protein
2490	 57.64	0	2383798..2386257	-	819	15839095	-	XF2505	-	hypothetical protein
2491	 51.28	0	2386432..2387250	-	272	77747607	-	XF2506	-	hypothetical protein
2492	 57.06	0	2387942..2388274	+	110	15839097	-	XF2507	-	hypothetical protein
2493	 46.59	0	2388344..2388592	-	82	15839098	-	XF2508	-	hypothetical protein
2494	 51.32	0	2388589..2388777	-	62	15839099	-	XF2509	-	hypothetical protein
2495	 50.22	0	2388757..2389668	+	303	15839100	-	XF2510	-	hypothetical protein
2496	 49.68	0	2389733..2390503	+	256	15839101	-	XF2511	-	hypothetical protein
2497	 52.59	0	2390672..2391211	+	179	15839102	-	XF2512	-	hypothetical protein
2498	 54.94	0	2391398..2391559	+	53	15839103	-	XF2513	-	hypothetical protein
2499	 57.89	0	2391747..2392202	+	151	15839104	-	XF2514	-	hypothetical protein
2500	 51.54	0	2392308..2392697	+	129	15839105	-	XF2515	-	hypothetical protein
2501	 46.02	0	2392694..2393095	+	133	15839106	-	XF2516	-	hypothetical protein
2502	 50.35	0	2393095..2393940	+	281	15839107	-	XF2517	-	hypothetical protein
2503	 55.21	0	2394152..2394343	+	63	15839108	-	XF2518	-	hypothetical protein
2504	 53.03	0	2394375..2394572	+	65	15839109	-	XF2519	-	hypothetical protein
2505	 54.94	0	2394566..2394727	+	53	15839110	-	XF2520	-	hypothetical protein
2506	 51.56	0	2394843..2395067	+	74	15839111	-	XF2521	-	hypothetical protein
2507	 60.41	+1	2395064..2396341	+	425	15839112	-	XF2522	-	hypothetical protein
2508	 58.55	+1	2396341..2396907	+	188	15839113	-	XF2523	-	hypothetical protein
2509	 55.45	0	2396976..2398490	+	504	77747608	-	XF2524	-	hypothetical protein
2510	 63.41	+1	2398492..2400672	+	726	15839115	-	XF2525	-	phage-related DNA polymerase
2511	 59.86	+1	2400669..2400947	+	92	15839116	-	XF2526	-	hypothetical protein
2512	 53.03	0	2400949..2401344	-	131	15839117	-	XF2527	-	hypothetical protein
2513	 57.08	0	2401429..2402847	+	472	15839118	-	XF2528	-	hypothetical protein
2514	 43.03	-1	2402844..2403008	+	54	15839119	-	XF2529	-	hypothetical protein
2515	 55.78	0	2403249..2404268	+	339	15839120	-	XF2530	-	phage-related integrase
2516	 50.54	0	2404589..2404867	+	92	15839121	-	XF2531	-	hypothetical protein
2517	 46.35	0	2407058..2407495	+	145	15839122	-	XF2533	-	hypothetical protein
2518	 54.28	0	2407544..2408221	+	225	15839123	-	XF2534	-	two-component system, regulatory protein
2519	 49.55	0	2408430..2409551	+	373	15839124	-	XF2535	-	two-component system, sensor protein
2520	 53.99	0	2409818..2410456	-	212	15839125	coaE	XF2536	-	dephospho-CoA kinase
2521	 50.93	0	2410453..2411316	-	287	15839126	-	XF2537	-	pre-pilin leader peptidase
2522	 49.88	0	2411323..2412525	-	400	77747609	-	XF2538	-	fimbrial assembly protein
2523	 50.34	0	2412967..2413413	+	148	15839128	-	XF2539	-	fimbrial protein
2524	 40.20	-1	2413674..2413877	-	67	15839129	-	XF2540	-	hypothetical protein
2525	 55.56	0	2414023..2414148	-	41	15839130	-	XF2541	-	hypothetical protein
2526	 53.47	0	2414710..2415156	+	148	15839131	-	XF2542	-	fimbrial protein
2527	 48.92	0	2415594..2415824	-	76	15839132	-	XF2543	-	hypothetical protein
2528	 52.36	0	2415976..2417709	+	577	15839133	-	XF2544	-	pilus biogenesis protein
2529	 52.41	0	2417803..2419296	-	497	15839134	-	XF2545	-	two-component system, regulatory protein
2530	 52.08	0	2419401..2421011	-	536	77747610	-	XF2546	-	two-component system, sensor protein
2531	 52.49	0	2421266..2422429	+	387	15839136	sucC	XF2547	-	succinyl-CoA synthetase subunit beta
2532	 51.43	0	2422458..2423330	+	290	15839137	-	XF2548	-	succinyl-CoA synthetase subunit alpha
2533	 61.04	+1	2423722..2424201	+	159	15839138	-	XF2549	-	hypothetical protein
2534	 55.69	0	2424313..2426106	-	597	15839139	-	XF2550	-	outer membrane hemolysin activator protein
2535	 58.99	+1	2426592..2429093	-	833	77747611	-	XF2551	-	hypothetical protein
2536	 55.37	0	2429336..2432017	-	893	15839141	-	XF2552	-	DNA gyrase subunit A
2537	 59.81	+1	2432210..2433274	-	354	15839142	mtnA	XF2553	-	methylthioribose-1-phosphate isomerase
2538	 55.94	0	2433431..2434120	-	229	15839143	-	XF2554	-	hypothetical protein
2539	 57.84	0	2434326..2435231	-	301	15839144	-	XF2555	-	lysyl-tRNA synthetase
2540	 57.97	0	2435757..2438252	-	831	77747612	ligA	XF2556	-	NAD-dependent DNA ligase LigA
2541	 55.05	0	2438999..2439730	-	243	15839146	-	XF2557	-	cell division protein ZipA
2542	 57.56	0	2439789..2443292	-	1167	15839147	-	XF2558	-	chromosome segregation protein
2543	 54.44	0	2443510..2443959	-	149	15839148	rplI	XF2559	-	50S ribosomal protein L9
2544	 45.02	-1	2444117..2444347	-	76	15839149	rpsR	XF2560	-	30S ribosomal protein S18
2545	 50.69	0	2444359..2444790	-	143	15839150	rpsF	XF2561	-	30S ribosomal protein S6
2546	 54.87	0	2445030..2445368	-	112	15839151	-	XF2562	-	hypothetical protein
2547	 54.53	0	2445579..2446979	+	466	15839152	asnC	XF2563	-	asparaginyl-tRNA synthetase
2548	 55.56	0	2446954..2447106	+	50	15839153	-	XF2564	-	hypothetical protein
2549	 45.03	-1	2447083..2447253	-	56	15839154	-	XF2565	-	hypothetical protein
2550	 43.50	-1	2447508..2447684	-	58	15839155	-	XF2566	-	hypothetical protein
2551	 47.64	0	2447778..2448581	+	267	15839156	-	XF2567	-	ABC transporter permease protein
2552	 49.26	0	2448588..2449328	+	246	15839157	-	XF2568	-	ABC transporter ATP-binding protein
2553	 52.78	0	2449366..2449581	-	71	15839158	-	XF2569	-	hypothetical protein
2554	 48.51	0	2449643..2449978	+	111	15839159	-	XF2570	-	hypothetical protein
2555	 56.16	0	2450268..2451323	+	351	77747613	-	XF2571	-	dihydroorotate dehydrogenase 2
2556	 56.06	0	2451320..2452375	+	351	15839161	murB	XF2572	-	UDP-N-acetylenolpyruvoylglucosamine reductase
2557	 55.24	0	2452369..2453304	+	311	15839162	-	XF2573	-	hypothetical protein
2558	 54.09	0	2453314..2453997	-	227	15839163	-	XF2574	-	hypothetical protein
2559	 55.69	0	2453978..2455243	-	421	77747614	ispG	XF2575	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2560	 51.52	0	2455273..2455470	-	65	15839165	-	XF2576	-	hypothetical protein
2561	 56.24	0	2455465..2456682	+	405	15839166	-	XF2577	-	two-component system, sensor protein
2562	 55.79	0	2456679..2457257	+	192	15839167	-	XF2578	-	two-component system, regulatory protein
2563	 49.94	0	2457517..2458395	-	292	161378157	tsf	XF2579	-	elongation factor Ts
2564	 53.93	0	2458584..2459384	-	266	15839169	rpsB	XF2580	-	30S ribosomal protein S2
2565	 53.92	0	2459969..2460376	+	135	15839170	-	XF2581	-	hypothetical protein
2566	 54.63	0	2460403..2462097	+	564	15839171	-	XF2582	-	ABC transporter ATP-binding protein
2567	 53.59	0	2462080..2462232	-	50	15839172	-	XF2583	-	hypothetical protein
2568	 48.45	0	2463046..2463303	-	85	15839173	-	XF2584	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.