IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2433	 50.79	0	2332376..2333257	-	293	15839038	-	XF2447	-	ABC transporter sugar permease
2434	 52.98	0	2333254..2334546	-	430	15839039	-	XF2448	-	ABC transporter sugar-binding protein
2435	 50.50	0	2334550..2336151	-	533	77747604	-	XF2449	-	hypothetical protein
2436	 51.89	0	2336780..2337070	-	96	15839041	-	XF2450	-	hypothetical protein
2437	 53.80	0	2337702..2338610	+	302	77747605	-	XF2451	-	hypothetical protein
2438	 53.05	0	2338597..2339580	+	327	15839043	-	XF2452	-	hypothetical protein
2439	 55.63	0	2339573..2341003	+	476	15839044	-	XF2453	-	hypothetical protein
2440	 54.55	0	2341400..2341861	-	153	15839045	-	XF2454	-	hypothetical protein
2441	 61.01	+1	2342070..2342741	+	223	15839046	-	XF2455	-	cytochrome c biogenesis protein CcmA
2442	 61.93	+1	2342738..2343433	+	231	15839047	-	XF2456	-	heme ABC transporter membrane protein
2443	 60.35	+1	2343467..2344210	+	247	15839048	-	XF2457	-	heme ABC transporter membrane protein
2444	 57.58	0	2344207..2344371	+	54	15839049	-	XF2458	-	hypothetical protein
2445	 56.28	0	2344368..2344829	+	153	15839050	-	XF2459	-	cytochrome c-type biogenesis protein CcmE
2446	 61.21	+1	2344949..2346889	+	646	15839051	-	XF2460	-	c-type cytochrome biogenesis membrane protein
2447	 57.58	0	2346882..2347475	+	197	15839052	-	XF2461	-	c-type cytochrome biogenesis protein/thioredoxin
2448	 58.16	0	2347472..2347906	+	144	15839053	-	XF2462	-	c-type cytochrome biogenesis protein
2449	 58.91	+1	2347903..2348547	+	214	15839054	-	XF2463	-	hypothetical protein
2450	 56.93	0	2348696..2348962	+	88	15839055	-	XF2464	-	hypothetical protein
2451	 56.78	0	2349138..2350250	+	370	15839056	metX	XF2465	-	homoserine O-acetyltransferase
2452	 57.41	0	2352378..2352539	-	53	15839057	-	XF2467	-	hypothetical protein
2453	 53.92	0	2352764..2352865	-	33	15839058	-	XF2468	-	hypothetical protein
2454	 62.46	+1	2353056..2353745	-	229	15839059	-	XF2469	-	hypothetical protein
2455	 57.39	0	2353779..2354468	-	229	15839060	-	XF2470	-	phosphoglycolate phosphatase
2456	 57.22	0	2354455..2355195	-	246	15839061	-	XF2471	-	3-demethylubiquinone-9 3-methyltransferase
2457	 58.79	+1	2355226..2356533	-	435	15839062	-	XF2472	-	N-ethylammeline chlorohydrolase
2458	 52.38	0	2356707..2357273	-	188	161378158	-	XF2473	-	elongation factor P
2459	 60.43	+1	2357332..2358405	+	357	15839064	-	XF2474	-	hypothetical protein
2460	 56.86	0	2358529..2359374	-	281	15839065	-	XF2475	-	tRNA/rRNA methyltransferase
2461	 54.83	0	2359411..2360238	+	275	15839066	-	XF2476	-	extragenic supressor
2462	 59.77	+1	2360408..2361088	+	226	15839067	bioD	XF2477	-	dithiobiotin synthetase
2463	 51.96	0	2361085..2361492	+	135	15839068	-	XF2478	-	hypothetical protein
2464	 58.54	+1	2361812..2362894	-	360	15839069	-	XF2479	-	hypothetical protein
2465	 61.19	+1	2362885..2363103	-	72	15839070	-	XF2480	-	phage-related tail protein
2466	 59.42	+1	2363100..2363582	-	160	15839071	-	XF2481	-	phage-related tail protein
2467	 57.93	0	2363579..2365798	-	739	15839072	-	XF2482	-	hypothetical protein
2468	 54.86	0	2365925..2366212	-	95	15839073	-	XF2483	-	hypothetical protein
2469	 53.53	0	2366215..2366724	-	169	15839074	-	XF2484	-	hypothetical protein
2470	 57.93	0	2366724..2367914	-	396	15839075	-	XF2485	-	phage tail sheath protein
2471	 58.51	+1	2367967..2369559	-	530	77747606	-	XF2486	-	hypothetical protein
2472	 60.04	+1	2369567..2370124	-	185	15839077	-	XF2487	-	phage-related tail protein
2473	 59.28	+1	2370117..2371010	-	297	15839078	-	XF2488	-	phage-related baseplate assembly protein
2474	 65.58	+2	2371010..2371285	-	91	15839079	-	XF2489	-	phage-related baseplate assembly protein
2475	 50.83	0	2371566..2371868	+	100	15839080	-	XF2490	-	hypothetical protein
2476	 52.49	0	2371871..2372272	+	133	15839081	-	XF2491	-	hypothetical protein
2477	 65.31	+2	2372341..2372928	-	195	15839082	-	XF2492	-	phage-related baseplate assembly protein
2478	 61.33	+1	2372925..2373467	-	180	15839083	-	XF2493	-	hypothetical protein
2479	 59.96	+1	2373443..2373964	-	173	15839084	-	XF2494	-	hypothetical protein
2480	 56.88	0	2373961..2374287	-	108	15839085	-	XF2495	-	hypothetical protein
2481	 61.69	+1	2374284..2374544	-	86	15839086	-	XF2496	-	hypothetical protein
2482	 59.86	+1	2374562..2376442	-	626	15839087	-	XF2497	-	hypothetical protein
2483	 57.41	0	2376426..2378024	-	532	15839088	-	XF2498	-	phage-related portal protein
2484	 58.65	+1	2378021..2378569	-	182	15839089	-	XF2499	-	hypothetical protein
2485	 58.52	+1	2378573..2380315	-	580	15839090	-	XF2500	-	phage-related terminase large subunit
2486	 55.67	0	2380518..2381099	-	193	15839091	-	XF2501	-	hypothetical protein
2487	 57.71	0	2381456..2381935	-	159	15839092	-	XF2502	-	hypothetical protein
2488	 54.81	0	2381907..2382218	-	103	15839093	-	XF2503	-	hypothetical protein
2489	 54.34	0	2382229..2382723	-	164	15839094	-	XF2504	-	hypothetical protein
2490	 57.64	0	2383798..2386257	-	819	15839095	-	XF2505	-	hypothetical protein
2491	 51.28	0	2386432..2387250	-	272	77747607	-	XF2506	-	hypothetical protein
2492	 57.06	0	2387942..2388274	+	110	15839097	-	XF2507	-	hypothetical protein
2493	 46.59	0	2388344..2388592	-	82	15839098	-	XF2508	-	hypothetical protein
2494	 51.32	0	2388589..2388777	-	62	15839099	-	XF2509	-	hypothetical protein
2495	 50.22	0	2388757..2389668	+	303	15839100	-	XF2510	-	hypothetical protein
2496	 49.68	0	2389733..2390503	+	256	15839101	-	XF2511	-	hypothetical protein
2497	 52.59	0	2390672..2391211	+	179	15839102	-	XF2512	-	hypothetical protein
2498	 54.94	0	2391398..2391559	+	53	15839103	-	XF2513	-	hypothetical protein
2499	 57.89	0	2391747..2392202	+	151	15839104	-	XF2514	-	hypothetical protein
2500	 51.54	0	2392308..2392697	+	129	15839105	-	XF2515	-	hypothetical protein
2501	 46.02	0	2392694..2393095	+	133	15839106	-	XF2516	-	hypothetical protein
2502	 50.35	0	2393095..2393940	+	281	15839107	-	XF2517	-	hypothetical protein
2503	 55.21	0	2394152..2394343	+	63	15839108	-	XF2518	-	hypothetical protein
2504	 53.03	0	2394375..2394572	+	65	15839109	-	XF2519	-	hypothetical protein
2505	 54.94	0	2394566..2394727	+	53	15839110	-	XF2520	-	hypothetical protein
2506	 51.56	0	2394843..2395067	+	74	15839111	-	XF2521	-	hypothetical protein
2507	 60.41	+1	2395064..2396341	+	425	15839112	-	XF2522	-	hypothetical protein
2508	 58.55	+1	2396341..2396907	+	188	15839113	-	XF2523	-	hypothetical protein
2509	 55.45	0	2396976..2398490	+	504	77747608	-	XF2524	-	hypothetical protein
2510	 63.41	+1	2398492..2400672	+	726	15839115	-	XF2525	-	phage-related DNA polymerase
2511	 59.86	+1	2400669..2400947	+	92	15839116	-	XF2526	-	hypothetical protein
2512	 53.03	0	2400949..2401344	-	131	15839117	-	XF2527	-	hypothetical protein
2513	 57.08	0	2401429..2402847	+	472	15839118	-	XF2528	-	hypothetical protein
2514	 43.03	-1	2402844..2403008	+	54	15839119	-	XF2529	-	hypothetical protein
2515	 55.78	0	2403249..2404268	+	339	15839120	-	XF2530	-	phage-related integrase
2516	 50.54	0	2404589..2404867	+	92	15839121	-	XF2531	-	hypothetical protein
2517	 46.35	0	2407058..2407495	+	145	15839122	-	XF2533	-	hypothetical protein
2518	 54.28	0	2407544..2408221	+	225	15839123	-	XF2534	-	two-component system, regulatory protein
2519	 49.55	0	2408430..2409551	+	373	15839124	-	XF2535	-	two-component system, sensor protein
2520	 53.99	0	2409818..2410456	-	212	15839125	coaE	XF2536	-	dephospho-CoA kinase
2521	 50.93	0	2410453..2411316	-	287	15839126	-	XF2537	-	pre-pilin leader peptidase
2522	 49.88	0	2411323..2412525	-	400	77747609	-	XF2538	-	fimbrial assembly protein
2523	 50.34	0	2412967..2413413	+	148	15839128	-	XF2539	-	fimbrial protein
2524	 40.20	-1	2413674..2413877	-	67	15839129	-	XF2540	-	hypothetical protein
2525	 55.56	0	2414023..2414148	-	41	15839130	-	XF2541	-	hypothetical protein
2526	 53.47	0	2414710..2415156	+	148	15839131	-	XF2542	-	fimbrial protein
2527	 48.92	0	2415594..2415824	-	76	15839132	-	XF2543	-	hypothetical protein
2528	 52.36	0	2415976..2417709	+	577	15839133	-	XF2544	-	pilus biogenesis protein
2529	 52.41	0	2417803..2419296	-	497	15839134	-	XF2545	-	two-component system, regulatory protein
2530	 52.08	0	2419401..2421011	-	536	77747610	-	XF2546	-	two-component system, sensor protein
2531	 52.49	0	2421266..2422429	+	387	15839136	sucC	XF2547	-	succinyl-CoA synthetase subunit beta
2532	 51.43	0	2422458..2423330	+	290	15839137	-	XF2548	-	succinyl-CoA synthetase subunit alpha
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.