IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2382	 55.22	0	2269845..2271119	-	424	77747600	-	XF2396	-	aminotransferase AlaT
2383	 54.69	0	2271534..2273696	+	720	15838988	-	XF2397	-	toxin secretion ABC transporter ATP-binding protein
2384	 54.64	0	2273693..2275114	+	473	15838989	-	XF2398	-	hemolysin secretion protein D
2385	 58.94	+1	2275164..2275409	+	81	15838990	-	XF2399	-	hypothetical protein
2386	 33.02	-2	2275725..2276354	+	209	15838991	-	XF2400	-	hypothetical protein
2387	 49.45	0	2276351..2276623	+	90	15838992	-	XF2401	-	hypothetical protein
2388	 39.97	-1	2276626..2277243	+	205	15838993	-	XF2402	-	hypothetical protein
2389	 51.28	0	2277240..2277512	+	90	15838994	-	XF2403	-	hypothetical protein
2390	 39.74	-2	2277515..2278138	+	207	15838995	-	XF2404	-	hypothetical protein
2391	 48.35	0	2278135..2278407	+	90	15838996	-	XF2405	-	hypothetical protein
2392	 41.42	-1	2278410..2279027	+	205	15838997	-	XF2406	-	hypothetical protein
2393	 57.41	0	2279027..2285218	+	2063	77747601	-	XF2407	-	bacteriocin
2394	 55.93	0	2285285..2285554	+	89	15838999	-	XF2408	-	hypothetical protein
2395	 55.96	0	2285562..2289128	+	1188	77747602	-	XF2409	-	hypothetical protein
2396	 62.64	+1	2289100..2289273	+	57	15839001	-	XF2410	-	hypothetical protein
2397	 53.56	0	2289970..2292303	-	777	15839002	-	XF2411	-	hypothetical protein
2398	 54.84	0	2292404..2292589	-	61	15839003	-	XF2412	-	hypothetical protein
2399	 59.21	+1	2292873..2293301	+	142	15839004	-	XF2413	-	hypothetical protein
2400	 56.48	0	2293298..2295103	-	601	15839005	-	XF2414	-	hypothetical protein
2401	 63.02	+1	2295246..2295437	-	63	15839006	-	XF2415	-	hypothetical protein
2402	 59.31	+1	2295710..2296660	-	316	15839007	ispH	XF2416	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2403	 56.94	0	2296718..2297221	-	167	15839008	lspA	XF2417	-	lipoprotein signal peptidase
2404	 58.93	+1	2297370..2300201	-	943	15839009	ileS	XF2418	-	isoleucyl-tRNA synthetase
2405	 58.02	0	2300198..2301145	-	315	15839010	-	XF2419	-	bifunctional riboflavin kinase/FMN adenylyltransferase
2406	 56.18	0	2301306..2302916	-	536	15839011	-	XF2420	-	virulence factor
2407	 52.59	0	2303016..2303285	+	89	161378159	rpsT	XF2421	-	30S ribosomal protein S20
2408	 53.17	0	2303399..2304472	-	357	77747603	obgE	XF2422	-	GTPase ObgE
2409	 51.94	0	2304644..2304901	-	85	15839014	rpmA	XF2423	-	50S ribosomal protein L27
2410	 52.02	0	2304925..2305245	-	106	15839015	rplU	XF2424	-	50S ribosomal protein L21
2411	 44.31	-1	2305318..2305563	+	81	15839016	-	XF2425	-	hypothetical protein
2412	 55.04	0	2305586..2308483	+	965	15839017	uvrA	XF2426	-	excinuclease ABC subunit A
2413	 51.74	0	2308607..2309557	-	316	15839018	-	XF2427	-	hypothetical protein
2414	 52.96	0	2310051..2311115	-	354	15839019	-	XF2428	-	hypothetical protein
2415	 54.11	0	2311167..2312735	-	522	15839020	guaA	XF2429	-	bifunctional GMP synthase/glutamine amidotransferase protein
2416	 53.36	0	2312971..2314428	-	485	15839021	-	XF2430	-	inositol-5-monophosphate dehydrogenase
2417	 54.50	0	2314545..2315432	-	295	15839022	-	XF2431	-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
2418	 52.19	0	2315651..2316541	-	296	15839023	-	XF2432	-	UTP-glucose-1-phosphate uridylyltransferase
2419	 52.41	0	2316541..2318448	-	635	15839024	-	XF2433	-	epimerase/dehydratase protein
2420	 51.74	0	2318461..2319438	-	325	15839025	-	XF2434	-	lipopolysaccharide core biosynthesis protein
2421	 51.46	0	2319438..2320634	-	398	15839026	-	XF2435	-	hypothetical protein
2422	 44.44	-1	2320621..2320944	-	107	15839027	-	XF2436	-	hypothetical protein
2423	 48.29	0	2320967..2321347	-	126	15839028	ihfB	XF2437	-	integration host factor subunit beta
2424	 48.77	0	2321391..2323100	-	569	15839029	rpsA	XF2438	-	30S ribosomal protein S1
2425	 51.49	0	2323296..2323967	-	223	15839030	cmk	XF2439	-	cytidylate kinase
2426	 48.41	0	2324214..2324339	+	41	15839031	rpmJ	XF2440	-	50S ribosomal protein L36
2427	 54.24	0	2324513..2324842	+	109	15839032	-	XF2441	-	hypothetical protein
2428	 54.12	0	2324842..2325933	+	363	15839033	-	XF2442	-	hypothetical protein
2429	 53.94	0	2326022..2326909	+	295	15839034	-	XF2443	-	beta-alanine synthetase
2430	 53.78	0	2326996..2328213	+	405	15839035	-	XF2444	-	pheromone shutdown protein
2431	 52.73	0	2328376..2331546	-	1056	15839036	-	XF2445	-	hypothetical protein
2432	 51.14	0	2331543..2332379	-	278	15839037	-	XF2446	-	ABC transporter sugar permease
2433	 50.79	0	2332376..2333257	-	293	15839038	-	XF2447	-	ABC transporter sugar permease
2434	 52.98	0	2333254..2334546	-	430	15839039	-	XF2448	-	ABC transporter sugar-binding protein
2435	 50.50	0	2334550..2336151	-	533	77747604	-	XF2449	-	hypothetical protein
2436	 51.89	0	2336780..2337070	-	96	15839041	-	XF2450	-	hypothetical protein
2437	 53.80	0	2337702..2338610	+	302	77747605	-	XF2451	-	hypothetical protein
2438	 53.05	0	2338597..2339580	+	327	15839043	-	XF2452	-	hypothetical protein
2439	 55.63	0	2339573..2341003	+	476	15839044	-	XF2453	-	hypothetical protein
2440	 54.55	0	2341400..2341861	-	153	15839045	-	XF2454	-	hypothetical protein
2441	 61.01	+1	2342070..2342741	+	223	15839046	-	XF2455	-	cytochrome c biogenesis protein CcmA
2442	 61.93	+1	2342738..2343433	+	231	15839047	-	XF2456	-	heme ABC transporter membrane protein
2443	 60.35	+1	2343467..2344210	+	247	15839048	-	XF2457	-	heme ABC transporter membrane protein
2444	 57.58	0	2344207..2344371	+	54	15839049	-	XF2458	-	hypothetical protein
2445	 56.28	0	2344368..2344829	+	153	15839050	-	XF2459	-	cytochrome c-type biogenesis protein CcmE
2446	 61.21	+1	2344949..2346889	+	646	15839051	-	XF2460	-	c-type cytochrome biogenesis membrane protein
2447	 57.58	0	2346882..2347475	+	197	15839052	-	XF2461	-	c-type cytochrome biogenesis protein/thioredoxin
2448	 58.16	0	2347472..2347906	+	144	15839053	-	XF2462	-	c-type cytochrome biogenesis protein
2449	 58.91	+1	2347903..2348547	+	214	15839054	-	XF2463	-	hypothetical protein
2450	 56.93	0	2348696..2348962	+	88	15839055	-	XF2464	-	hypothetical protein
2451	 56.78	0	2349138..2350250	+	370	15839056	metX	XF2465	-	homoserine O-acetyltransferase
2452	 57.41	0	2352378..2352539	-	53	15839057	-	XF2467	-	hypothetical protein
2453	 53.92	0	2352764..2352865	-	33	15839058	-	XF2468	-	hypothetical protein
2454	 62.46	+1	2353056..2353745	-	229	15839059	-	XF2469	-	hypothetical protein
2455	 57.39	0	2353779..2354468	-	229	15839060	-	XF2470	-	phosphoglycolate phosphatase
2456	 57.22	0	2354455..2355195	-	246	15839061	-	XF2471	-	3-demethylubiquinone-9 3-methyltransferase
2457	 58.79	+1	2355226..2356533	-	435	15839062	-	XF2472	-	N-ethylammeline chlorohydrolase
2458	 52.38	0	2356707..2357273	-	188	161378158	-	XF2473	-	elongation factor P
2459	 60.43	+1	2357332..2358405	+	357	15839064	-	XF2474	-	hypothetical protein
2460	 56.86	0	2358529..2359374	-	281	15839065	-	XF2475	-	tRNA/rRNA methyltransferase
2461	 54.83	0	2359411..2360238	+	275	15839066	-	XF2476	-	extragenic supressor
2462	 59.77	+1	2360408..2361088	+	226	15839067	bioD	XF2477	-	dithiobiotin synthetase
2463	 51.96	0	2361085..2361492	+	135	15839068	-	XF2478	-	hypothetical protein
2464	 58.54	+1	2361812..2362894	-	360	15839069	-	XF2479	-	hypothetical protein
2465	 61.19	+1	2362885..2363103	-	72	15839070	-	XF2480	-	phage-related tail protein
2466	 59.42	+1	2363100..2363582	-	160	15839071	-	XF2481	-	phage-related tail protein
2467	 57.93	0	2363579..2365798	-	739	15839072	-	XF2482	-	hypothetical protein
2468	 54.86	0	2365925..2366212	-	95	15839073	-	XF2483	-	hypothetical protein
2469	 53.53	0	2366215..2366724	-	169	15839074	-	XF2484	-	hypothetical protein
2470	 57.93	0	2366724..2367914	-	396	15839075	-	XF2485	-	phage tail sheath protein
2471	 58.51	+1	2367967..2369559	-	530	77747606	-	XF2486	-	hypothetical protein
2472	 60.04	+1	2369567..2370124	-	185	15839077	-	XF2487	-	phage-related tail protein
2473	 59.28	+1	2370117..2371010	-	297	15839078	-	XF2488	-	phage-related baseplate assembly protein
2474	 65.58	+2	2371010..2371285	-	91	15839079	-	XF2489	-	phage-related baseplate assembly protein
2475	 50.83	0	2371566..2371868	+	100	15839080	-	XF2490	-	hypothetical protein
2476	 52.49	0	2371871..2372272	+	133	15839081	-	XF2491	-	hypothetical protein
2477	 65.31	+2	2372341..2372928	-	195	15839082	-	XF2492	-	phage-related baseplate assembly protein
2478	 61.33	+1	2372925..2373467	-	180	15839083	-	XF2493	-	hypothetical protein
2479	 59.96	+1	2373443..2373964	-	173	15839084	-	XF2494	-	hypothetical protein
2480	 56.88	0	2373961..2374287	-	108	15839085	-	XF2495	-	hypothetical protein
2481	 61.69	+1	2374284..2374544	-	86	15839086	-	XF2496	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.