IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2353	 44.40	-1	2243951..2245405	-	484	15838958	-	XF2367	-	GumD protein
2354	 48.21	0	2245405..2245572	+	55	15838959	-	XF2368	-	hypothetical protein
2355	 43.66	-1	2245617..2247020	-	467	15838960	-	XF2369	-	GumC protein
2356	 48.47	0	2247023..2247676	-	217	15838961	-	XF2370	-	GumB protein
2357	 40.62	-1	2247973..2248164	-	63	15838962	-	XF2371	-	hypothetical protein
2358	 49.53	0	2248375..2249448	-	357	15838963	-	XF2372	-	3-isopropylmalate dehydrogenase
2359	 48.62	0	2249658..2249984	-	108	15838964	-	XF2373	-	hypothetical protein
2360	 48.61	0	2250032..2250679	-	215	15838965	leuD	XF2374	-	isopropylmalate isomerase small subunit
2361	 52.91	0	2250889..2252313	-	474	15838966	-	XF2375	-	isopropylmalate isomerase large subunit
2362	 50.29	0	2252915..2253085	-	56	15838967	-	XF2376	-	hypothetical protein
2363	 46.33	0	2253092..2253268	-	58	15838968	-	XF2377	-	hypothetical protein
2364	 41.07	-1	2253315..2253482	-	55	15838969	-	XF2378	-	hypothetical protein
2365	 43.88	-1	2253490..2253726	+	78	15838970	-	XF2379	-	hypothetical protein
2366	 48.65	0	2253704..2254186	+	160	15838971	-	XF2380	-	hypothetical protein
2367	 46.88	0	2254370..2254465	-	31	15838972	-	XF2381	-	hypothetical protein
2368	 43.52	-1	2254473..2254688	+	71	15838973	-	XF2382	-	hypothetical protein
2369	 51.21	0	2254889..2255716	-	275	15838974	queF	XF2383	-	7-cyano-7-deazaguanine reductase
2370	 54.85	0	2255906..2257141	+	411	15838975	-	XF2384	-	membrane fusion protein precursor
2371	 56.74	0	2257189..2260422	+	1077	15838976	-	XF2385	-	acriflavin resistance protein D
2372	 55.23	0	2260514..2263618	+	1034	15838977	-	XF2386	-	acriflavin resistance protein
2373	 55.39	0	2263771..2264391	-	206	15838978	-	XF2387	-	hypothetical protein
2374	 48.72	0	2264421..2264576	-	51	15838979	-	XF2388	-	hypothetical protein
2375	 52.29	0	2264709..2265758	-	349	15838980	-	XF2389	-	alcohol dehydrogenase
2376	 49.06	0	2266049..2266366	-	105	15838981	-	XF2390	-	hypothetical protein
2377	 46.79	0	2266367..2266522	-	51	15838982	-	XF2391	-	hypothetical protein
2378	 39.48	-2	2266574..2267191	-	205	15838983	-	XF2392	-	autolytic lysozyme
2379	 50.00	0	2267616..2267777	+	53	15838984	-	XF2393	-	hypothetical protein
2380	 54.05	0	2267804..2268730	-	308	77747598	-	XF2394	-	glutaredoxin-like protein
2381	 56.24	0	2268796..2269572	+	258	77747599	-	XF2395	-	acetylxylan esterase
2382	 55.22	0	2269845..2271119	-	424	77747600	-	XF2396	-	aminotransferase AlaT
2383	 54.69	0	2271534..2273696	+	720	15838988	-	XF2397	-	toxin secretion ABC transporter ATP-binding protein
2384	 54.64	0	2273693..2275114	+	473	15838989	-	XF2398	-	hemolysin secretion protein D
2385	 58.94	+1	2275164..2275409	+	81	15838990	-	XF2399	-	hypothetical protein
2386	 33.02	-2	2275725..2276354	+	209	15838991	-	XF2400	-	hypothetical protein
2387	 49.45	0	2276351..2276623	+	90	15838992	-	XF2401	-	hypothetical protein
2388	 39.97	-1	2276626..2277243	+	205	15838993	-	XF2402	-	hypothetical protein
2389	 51.28	0	2277240..2277512	+	90	15838994	-	XF2403	-	hypothetical protein
2390	 39.74	-2	2277515..2278138	+	207	15838995	-	XF2404	-	hypothetical protein
2391	 48.35	0	2278135..2278407	+	90	15838996	-	XF2405	-	hypothetical protein
2392	 41.42	-1	2278410..2279027	+	205	15838997	-	XF2406	-	hypothetical protein
2393	 57.41	0	2279027..2285218	+	2063	77747601	-	XF2407	-	bacteriocin
2394	 55.93	0	2285285..2285554	+	89	15838999	-	XF2408	-	hypothetical protein
2395	 55.96	0	2285562..2289128	+	1188	77747602	-	XF2409	-	hypothetical protein
2396	 62.64	+1	2289100..2289273	+	57	15839001	-	XF2410	-	hypothetical protein
2397	 53.56	0	2289970..2292303	-	777	15839002	-	XF2411	-	hypothetical protein
2398	 54.84	0	2292404..2292589	-	61	15839003	-	XF2412	-	hypothetical protein
2399	 59.21	+1	2292873..2293301	+	142	15839004	-	XF2413	-	hypothetical protein
2400	 56.48	0	2293298..2295103	-	601	15839005	-	XF2414	-	hypothetical protein
2401	 63.02	+1	2295246..2295437	-	63	15839006	-	XF2415	-	hypothetical protein
2402	 59.31	+1	2295710..2296660	-	316	15839007	ispH	XF2416	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
2403	 56.94	0	2296718..2297221	-	167	15839008	lspA	XF2417	-	lipoprotein signal peptidase
2404	 58.93	+1	2297370..2300201	-	943	15839009	ileS	XF2418	-	isoleucyl-tRNA synthetase
2405	 58.02	0	2300198..2301145	-	315	15839010	-	XF2419	-	bifunctional riboflavin kinase/FMN adenylyltransferase
2406	 56.18	0	2301306..2302916	-	536	15839011	-	XF2420	-	virulence factor
2407	 52.59	0	2303016..2303285	+	89	161378159	rpsT	XF2421	-	30S ribosomal protein S20
2408	 53.17	0	2303399..2304472	-	357	77747603	obgE	XF2422	-	GTPase ObgE
2409	 51.94	0	2304644..2304901	-	85	15839014	rpmA	XF2423	-	50S ribosomal protein L27
2410	 52.02	0	2304925..2305245	-	106	15839015	rplU	XF2424	-	50S ribosomal protein L21
2411	 44.31	-1	2305318..2305563	+	81	15839016	-	XF2425	-	hypothetical protein
2412	 55.04	0	2305586..2308483	+	965	15839017	uvrA	XF2426	-	excinuclease ABC subunit A
2413	 51.74	0	2308607..2309557	-	316	15839018	-	XF2427	-	hypothetical protein
2414	 52.96	0	2310051..2311115	-	354	15839019	-	XF2428	-	hypothetical protein
2415	 54.11	0	2311167..2312735	-	522	15839020	guaA	XF2429	-	bifunctional GMP synthase/glutamine amidotransferase protein
2416	 53.36	0	2312971..2314428	-	485	15839021	-	XF2430	-	inositol-5-monophosphate dehydrogenase
2417	 54.50	0	2314545..2315432	-	295	15839022	-	XF2431	-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
2418	 52.19	0	2315651..2316541	-	296	15839023	-	XF2432	-	UTP-glucose-1-phosphate uridylyltransferase
2419	 52.41	0	2316541..2318448	-	635	15839024	-	XF2433	-	epimerase/dehydratase protein
2420	 51.74	0	2318461..2319438	-	325	15839025	-	XF2434	-	lipopolysaccharide core biosynthesis protein
2421	 51.46	0	2319438..2320634	-	398	15839026	-	XF2435	-	hypothetical protein
2422	 44.44	-1	2320621..2320944	-	107	15839027	-	XF2436	-	hypothetical protein
2423	 48.29	0	2320967..2321347	-	126	15839028	ihfB	XF2437	-	integration host factor subunit beta
2424	 48.77	0	2321391..2323100	-	569	15839029	rpsA	XF2438	-	30S ribosomal protein S1
2425	 51.49	0	2323296..2323967	-	223	15839030	cmk	XF2439	-	cytidylate kinase
2426	 48.41	0	2324214..2324339	+	41	15839031	rpmJ	XF2440	-	50S ribosomal protein L36
2427	 54.24	0	2324513..2324842	+	109	15839032	-	XF2441	-	hypothetical protein
2428	 54.12	0	2324842..2325933	+	363	15839033	-	XF2442	-	hypothetical protein
2429	 53.94	0	2326022..2326909	+	295	15839034	-	XF2443	-	beta-alanine synthetase
2430	 53.78	0	2326996..2328213	+	405	15839035	-	XF2444	-	pheromone shutdown protein
2431	 52.73	0	2328376..2331546	-	1056	15839036	-	XF2445	-	hypothetical protein
2432	 51.14	0	2331543..2332379	-	278	15839037	-	XF2446	-	ABC transporter sugar permease
2433	 50.79	0	2332376..2333257	-	293	15839038	-	XF2447	-	ABC transporter sugar permease
2434	 52.98	0	2333254..2334546	-	430	15839039	-	XF2448	-	ABC transporter sugar-binding protein
2435	 50.50	0	2334550..2336151	-	533	77747604	-	XF2449	-	hypothetical protein
2436	 51.89	0	2336780..2337070	-	96	15839041	-	XF2450	-	hypothetical protein
2437	 53.80	0	2337702..2338610	+	302	77747605	-	XF2451	-	hypothetical protein
2438	 53.05	0	2338597..2339580	+	327	15839043	-	XF2452	-	hypothetical protein
2439	 55.63	0	2339573..2341003	+	476	15839044	-	XF2453	-	hypothetical protein
2440	 54.55	0	2341400..2341861	-	153	15839045	-	XF2454	-	hypothetical protein
2441	 61.01	+1	2342070..2342741	+	223	15839046	-	XF2455	-	cytochrome c biogenesis protein CcmA
2442	 61.93	+1	2342738..2343433	+	231	15839047	-	XF2456	-	heme ABC transporter membrane protein
2443	 60.35	+1	2343467..2344210	+	247	15839048	-	XF2457	-	heme ABC transporter membrane protein
2444	 57.58	0	2344207..2344371	+	54	15839049	-	XF2458	-	hypothetical protein
2445	 56.28	0	2344368..2344829	+	153	15839050	-	XF2459	-	cytochrome c-type biogenesis protein CcmE
2446	 61.21	+1	2344949..2346889	+	646	15839051	-	XF2460	-	c-type cytochrome biogenesis membrane protein
2447	 57.58	0	2346882..2347475	+	197	15839052	-	XF2461	-	c-type cytochrome biogenesis protein/thioredoxin
2448	 58.16	0	2347472..2347906	+	144	15839053	-	XF2462	-	c-type cytochrome biogenesis protein
2449	 58.91	+1	2347903..2348547	+	214	15839054	-	XF2463	-	hypothetical protein
2450	 56.93	0	2348696..2348962	+	88	15839055	-	XF2464	-	hypothetical protein
2451	 56.78	0	2349138..2350250	+	370	15839056	metX	XF2465	-	homoserine O-acetyltransferase
2452	 57.41	0	2352378..2352539	-	53	15839057	-	XF2467	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.