IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2262	 57.24	0	2166585..2168228	-	547	77747591	-	XF2276	-	peptide synthase
2263	 47.88	0	2168522..2168851	-	109	15838868	-	XF2277	-	hypothetical protein
2264	 52.10	0	2168848..2169609	-	253	15838869	-	XF2278	-	dolichol-phosphate mannosyltransferase
2265	 55.69	0	2169609..2170637	-	342	15838870	-	XF2279	-	nucleotide sugar epimerase
2266	 51.11	0	2170713..2170892	+	59	15838871	-	XF2280	-	hypothetical protein
2267	 55.63	0	2170954..2171886	-	310	15838872	-	XF2281	-	chromosome partitioning protein
2268	 53.58	0	2171886..2172680	-	264	15838873	-	XF2282	-	chromosome partitioning protein
2269	 52.10	0	2172979..2173932	-	317	15838874	-	XF2283	-	hypothetical protein
2270	 46.41	0	2174038..2174274	+	78	15838875	-	XF2284	-	hypothetical protein
2271	 39.76	-1	2174254..2174502	-	82	15838876	-	XF2285	-	hypothetical protein
2272	 51.37	0	2174738..2176018	-	426	161378160	-	XF2286	-	seryl-tRNA synthetase
2273	 55.89	0	2176140..2176835	+	231	15838878	-	XF2287	-	TonB protein
2274	 51.13	0	2177071..2178132	-	353	15838879	-	XF2288	-	phage-related integrase
2275	 52.19	0	2178144..2178440	-	98	15838880	-	XF2289	-	hypothetical protein
2276	 63.58	+1	2178671..2179609	+	312	15838881	-	XF2290	-	hypothetical protein
2277	 62.71	+1	2179606..2180364	+	252	15838882	-	XF2291	-	hypothetical protein
2278	 59.86	+1	2180361..2180639	+	92	15838883	-	XF2292	-	hypothetical protein
2279	 53.40	0	2180641..2180949	-	102	15838884	-	XF2293	-	hypothetical protein
2280	 51.85	0	2180998..2181726	+	242	15838885	-	XF2294	-	hypothetical protein
2281	 58.46	+1	2181723..2183135	+	470	15838886	-	XF2295	-	hypothetical protein
2282	 37.65	-2	2183304..2183465	+	53	15838887	-	XF2296	-	hypothetical protein
2283	 58.39	0	2183736..2184206	+	156	15838888	-	XF2297	-	DNA methylase
2284	 55.91	0	2184193..2184657	-	154	15838889	-	XF2298	-	low molecular weight phosphotyrosine protein phosphatase
2285	 57.75	0	2184654..2185427	-	257	15838890	-	XF2299	-	3-deoxy-manno-octulosonate cytidylyltransferase
2286	 43.92	-1	2185648..2185836	+	62	15838891	-	XF2300	-	hypothetical protein
2287	 53.80	0	2186143..2186997	+	284	77747592	-	XF2301	-	polysaccharide export protein
2288	 57.98	0	2187092..2188426	-	444	15838893	-	XF2302	-	glutamate-1-semialdehyde aminotransferase
2289	 52.03	0	2188752..2189318	-	188	15838894	-	XF2303	-	transposase
2290	 55.95	0	2189306..2189557	+	83	15838895	-	XF2304	-	hypothetical protein
2291	 38.80	-2	2189780..2190163	+	127	15838896	-	XF2305	-	hypothetical protein
2292	 51.24	0	2190566..2191570	-	334	15838897	-	XF2306	-	delta-aminolevulinic acid dehydratase
2293	 49.00	0	2192194..2192691	+	165	77747593	-	XF2307	-	hypothetical protein
2294	 53.33	0	2192899..2193348	+	149	77747594	-	XF2308	-	hypothetical protein
2295	 51.28	0	2193735..2193890	+	51	15838900	-	XF2309	-	hypothetical protein
2296	 48.74	0	2194042..2194677	-	211	15838901	-	XF2310	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
2297	 55.63	0	2194674..2196557	-	627	15838902	uvrC	XF2311	-	excinuclease ABC subunit C
2298	 49.38	0	2196696..2196857	-	53	15838903	-	XF2312	-	hypothetical protein
2299	 56.97	0	2197200..2197931	+	243	15838904	-	XF2313	-	site-specific DNA-methyltransferase
2300	 56.28	0	2197984..2198532	+	182	15838905	-	XF2314	-	phage-related lysozyme
2301	 59.39	+1	2198525..2198689	+	54	15838906	-	XF2315	-	hypothetical protein
2302	 56.82	0	2198671..2199117	+	148	15838907	-	XF2316	-	hypothetical protein
2303	 59.58	+1	2199119..2199781	+	220	15838908	-	XF2317	-	hypothetical protein
2304	 58.51	+1	2199857..2200690	+	277	15838909	-	XF2318	-	hypothetical protein
2305	 57.50	0	2200719..2200958	+	79	15838910	-	XF2319	-	hypothetical protein
2306	 57.71	0	2200969..2201247	-	92	15838911	-	XF2320	-	hypothetical protein
2307	 38.83	-2	2201483..2201755	-	90	15838912	-	XF2321	-	hypothetical protein
2308	 40.30	-1	2202300..2202500	-	66	15838913	-	XF2322	-	hypothetical protein
2309	 43.83	-1	2202799..2202960	-	53	15838914	-	XF2323	-	hypothetical protein
2310	 54.36	0	2202957..2204321	-	454	15838915	-	XF2324	-	3-phosphoshikimate 1-carboxyvinyltransferase
2311	 50.40	0	2204374..2205498	-	374	15838916	-	XF2325	-	P-protein
2312	 51.24	0	2205578..2206666	-	362	15838917	-	XF2326	-	phosphoserine aminotransferase
2313	 50.12	0	2207240..2208442	+	400	15838918	-	XF2327	-	TonB protein
2314	 51.05	0	2208529..2209713	-	394	15838919	-	XF2328	-	ABC transporter sodium permease
2315	 52.21	0	2209710..2210456	-	248	15838920	-	XF2329	-	sodium ABC transporter ATP-binding protein
2316	 54.14	0	2210453..2212033	-	526	15838921	-	XF2330	-	proteinase
2317	 53.09	0	2212193..2212759	-	188	15838922	-	XF2331	-	dihydrofolate reductase type III
2318	 50.19	0	2212802..2213596	-	264	15838923	thyA	XF2332	-	thymidylate synthase
2319	 54.08	0	2213593..2214498	-	301	15838924	-	XF2333	-	prolipoprotein diacylglyceryl transferase
2320	 50.98	0	2214585..2215043	-	152	15838925	-	XF2334	-	diacylglycerol kinase
2321	 44.81	-1	2215021..2215203	+	60	15838926	-	XF2335	-	hypothetical protein
2322	 53.03	0	2215260..2215985	-	241	15838927	-	XF2336	-	two-component system, regulatory protein
2323	 45.69	-1	2216032..2216298	+	88	15838928	-	XF2337	-	hypothetical protein
2324	 53.21	0	2216453..2217574	-	373	15838929	-	XF2338	-	prephenate dehydrogenase
2325	 53.21	0	2217643..2218749	-	368	15838930	-	XF2339	-	DnaJ protein
2326	 50.70	0	2218887..2220803	-	638	15838931	dnaK	XF2340	-	molecular chaperone DnaK
2327	 52.90	0	2220937..2221539	-	200	15838932	-	XF2341	-	heat shock protein GrpE
2328	 53.53	0	2221578..2222681	-	367	15838933	hrcA	XF2342	-	heat-inducible transcription repressor
2329	 54.36	0	2222746..2224419	+	557	15838934	-	XF2343	-	recombination protein N
2330	 49.29	0	2224563..2225057	-	164	15838935	-	XF2344	-	FUR family transcriptional regulator
2331	 46.80	0	2225042..2225479	+	145	15838936	-	XF2345	-	outer membrane protein
2332	 52.67	0	2225508..2225750	-	80	15838937	-	XF2346	-	hypothetical protein
2333	 48.07	0	2225752..2226192	-	146	15838938	-	XF2347	-	hypothetical protein
2334	 52.98	0	2226256..2226759	+	167	15838939	smpB	XF2348	-	SsrA-binding protein
2335	 44.66	-1	2226959..2229157	-	732	77747595	-	XF2349	-	hypothetical protein
2336	 48.54	0	2229440..2229610	-	56	15838941	-	XF2350	-	hypothetical protein
2337	 43.03	-1	2229871..2230035	+	54	15838942	-	XF2351	-	hypothetical protein
2338	 48.04	0	2230084..2230287	-	67	15838943	-	XF2352	-	cold shock protein
2339	 52.10	0	2230400..2231113	-	237	15838944	-	XF2353	-	5'-methylthioadenosine phosphorylase
2340	 51.79	0	2231115..2231672	-	185	15838945	-	XF2354	-	hypoxanthine-guanine phosphoribosyltransferase
2341	 54.86	0	2231669..2232676	-	335	15838946	-	XF2355	-	beta-hexosaminidase
2342	 48.48	0	2232692..2232889	-	65	15838947	-	XF2356	-	hypothetical protein
2343	 51.20	0	2232868..2233365	-	165	15838948	-	XF2357	-	hypothetical protein
2344	 52.63	0	2233427..2234758	-	443	15838949	rumA	XF2358	-	23S rRNA 5-methyluridine methyltransferase
2345	 53.73	0	2234956..2235666	+	236	15838950	-	XF2359	-	hypothetical protein
2346	 48.25	0	2235883..2236680	-	265	15838951	-	XF2360	-	GumM protein
2347	 45.33	-1	2236827..2237960	-	377	77747596	-	XF2361	-	GumK protein
2348	 47.23	0	2238081..2239613	-	510	15838953	-	XF2362	-	GumJ protein
2349	 41.22	-1	2239610..2239888	-	92	15838954	-	XF2363	-	hypothetical protein
2350	 45.49	-1	2239990..2241132	-	380	15838955	-	XF2364	-	GumH protein
2351	 42.95	-1	2241543..2242613	-	356	77747597	-	XF2365	-	GumF protein
2352	 41.73	-1	2242631..2243905	-	424	15838957	-	XF2366	-	GumE protein
2353	 44.40	-1	2243951..2245405	-	484	15838958	-	XF2367	-	GumD protein
2354	 48.21	0	2245405..2245572	+	55	15838959	-	XF2368	-	hypothetical protein
2355	 43.66	-1	2245617..2247020	-	467	15838960	-	XF2369	-	GumC protein
2356	 48.47	0	2247023..2247676	-	217	15838961	-	XF2370	-	GumB protein
2357	 40.62	-1	2247973..2248164	-	63	15838962	-	XF2371	-	hypothetical protein
2358	 49.53	0	2248375..2249448	-	357	15838963	-	XF2372	-	3-isopropylmalate dehydrogenase
2359	 48.62	0	2249658..2249984	-	108	15838964	-	XF2373	-	hypothetical protein
2360	 48.61	0	2250032..2250679	-	215	15838965	leuD	XF2374	-	isopropylmalate isomerase small subunit
2361	 52.91	0	2250889..2252313	-	474	15838966	-	XF2375	-	isopropylmalate isomerase large subunit
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.