IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2219	 55.90	0	2121360..2122241	-	293	15838824	-	XF2233	-	DnaJ protein
2220	 50.31	0	2122386..2122868	-	160	15838825	-	XF2234	-	low molecular weight heat shock protein
2221	 58.09	0	2123146..2125536	-	796	15838826	-	XF2235	-	bifunctional penicillin binding protein 1C precursor
2222	 40.94	-1	2125826..2125996	-	56	15838827	-	XF2236	-	hypothetical protein
2223	 51.58	0	2126364..2129240	+	958	15838828	-	XF2237	-	hypothetical protein
2224	 51.85	0	2129442..2129603	+	53	15838829	-	XF2238	-	hypothetical protein
2225	 51.05	0	2130143..2130763	+	206	15838830	-	XF2239	-	RNA polymerase sigma factor RpoE
2226	 53.42	0	2130760..2131491	+	243	15838831	-	XF2240	-	hypothetical protein
2227	 54.30	0	2131589..2133133	+	514	15838832	-	XF2241	-	periplasmic protease
2228	 54.55	0	2133171..2133335	+	54	15838833	-	XF2242	-	hypothetical protein
2229	 52.07	0	2133317..2135125	+	602	15838834	-	XF2243	-	GTP-binding protein LepA
2230	 49.44	0	2135226..2136026	+	266	15838835	-	XF2244	-	signal peptidase I
2231	 39.13	-2	2136023..2136436	+	137	15838836	-	XF2245	-	hypothetical protein
2232	 54.62	0	2136468..2137106	+	212	15838837	rnc	XF2246	-	ribonuclease III
2233	 51.39	0	2137103..2137999	+	298	15838838	era	XF2247	-	GTP-binding protein Era
2234	 53.96	0	2138170..2138901	+	243	15838839	recO	XF2248	-	DNA repair protein RecO
2235	 52.94	0	2139060..2140967	-	635	77747589	-	XF2249	-	1-deoxy-D-xylulose-5-phosphate synthase
2236	 47.26	0	2141319..2141555	+	78	15838841	-	XF2250	-	hypothetical protein
2237	 50.58	0	2141567..2143300	-	577	15838842	actP	XF2251	-	acetate permease
2238	 43.31	-1	2143297..2143677	-	126	15838843	-	XF2252	-	hypothetical protein
2239	 37.74	-2	2143772..2143930	-	52	15838844	-	XF2253	-	hypothetical protein
2240	 48.15	0	2143943..2144077	-	44	15838845	-	XF2254	-	hypothetical protein
2241	 56.33	0	2144143..2146086	+	647	15838846	-	XF2255	-	acetyl-CoA synthetase
2242	 43.92	-1	2146129..2146317	+	62	15838847	-	XF2256	-	hypothetical protein
2243	 54.26	0	2146616..2147308	+	230	15838848	-	XF2257	-	hypothetical protein
2244	 31.30	-2	2147764..2148156	+	130	15838849	-	XF2258	-	hypothetical protein
2245	 49.27	0	2148947..2150521	+	524	15838850	-	XF2259	-	polyvinylalcohol dehydrogenase
2246	 53.07	0	2150826..2152892	-	688	77747590	-	XF2260	-	alanyl dipeptidyl peptidase
2247	 55.40	0	2153316..2155277	-	653	15838852	-	XF2261	-	oligopeptide transporter
2248	 48.89	0	2155270..2155449	-	59	15838853	-	XF2262	-	hypothetical protein
2249	 53.23	0	2155456..2155641	-	61	15838854	-	XF2263	-	hypothetical protein
2250	 51.01	0	2155653..2155850	-	65	15838855	-	XF2264	-	hypothetical protein
2251	 39.46	-2	2155870..2156016	+	48	15838856	-	XF2265	-	hypothetical protein
2252	 56.43	0	2156013..2157536	+	507	15838857	glpD	XF2266	-	glycerol-3-phosphate dehydrogenase
2253	 56.40	0	2157650..2158477	+	275	15838858	-	XF2267	-	glycerol uptake facilitator protein
2254	 56.67	0	2158482..2160032	+	516	15838859	glpK	XF2268	-	glycerol kinase
2255	 55.34	0	2160246..2161013	-	255	15838860	-	XF2269	-	3-alpha-hydroxysteroid dehydrogenase
2256	 57.79	0	2161322..2162188	+	288	15838861	-	XF2270	-	hypothetical protein
2257	 55.15	0	2162380..2162787	+	135	15838862	-	XF2271	-	hypothetical protein
2258	 56.48	0	2162799..2165075	+	758	15838863	-	XF2272	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2259	 54.29	0	2165142..2165852	+	236	15838864	-	XF2273	-	hypothetical protein
2260	 56.79	0	2165874..2166116	+	80	15838865	-	XF2274	-	hypothetical protein
2261	 62.42	+1	2166120..2166284	-	54	15838866	-	XF2275	-	hypothetical protein
2262	 57.24	0	2166585..2168228	-	547	77747591	-	XF2276	-	peptide synthase
2263	 47.88	0	2168522..2168851	-	109	15838868	-	XF2277	-	hypothetical protein
2264	 52.10	0	2168848..2169609	-	253	15838869	-	XF2278	-	dolichol-phosphate mannosyltransferase
2265	 55.69	0	2169609..2170637	-	342	15838870	-	XF2279	-	nucleotide sugar epimerase
2266	 51.11	0	2170713..2170892	+	59	15838871	-	XF2280	-	hypothetical protein
2267	 55.63	0	2170954..2171886	-	310	15838872	-	XF2281	-	chromosome partitioning protein
2268	 53.58	0	2171886..2172680	-	264	15838873	-	XF2282	-	chromosome partitioning protein
2269	 52.10	0	2172979..2173932	-	317	15838874	-	XF2283	-	hypothetical protein
2270	 46.41	0	2174038..2174274	+	78	15838875	-	XF2284	-	hypothetical protein
2271	 39.76	-1	2174254..2174502	-	82	15838876	-	XF2285	-	hypothetical protein
2272	 51.37	0	2174738..2176018	-	426	161378160	-	XF2286	-	seryl-tRNA synthetase
2273	 55.89	0	2176140..2176835	+	231	15838878	-	XF2287	-	TonB protein
2274	 51.13	0	2177071..2178132	-	353	15838879	-	XF2288	-	phage-related integrase
2275	 52.19	0	2178144..2178440	-	98	15838880	-	XF2289	-	hypothetical protein
2276	 63.58	+1	2178671..2179609	+	312	15838881	-	XF2290	-	hypothetical protein
2277	 62.71	+1	2179606..2180364	+	252	15838882	-	XF2291	-	hypothetical protein
2278	 59.86	+1	2180361..2180639	+	92	15838883	-	XF2292	-	hypothetical protein
2279	 53.40	0	2180641..2180949	-	102	15838884	-	XF2293	-	hypothetical protein
2280	 51.85	0	2180998..2181726	+	242	15838885	-	XF2294	-	hypothetical protein
2281	 58.46	+1	2181723..2183135	+	470	15838886	-	XF2295	-	hypothetical protein
2282	 37.65	-2	2183304..2183465	+	53	15838887	-	XF2296	-	hypothetical protein
2283	 58.39	0	2183736..2184206	+	156	15838888	-	XF2297	-	DNA methylase
2284	 55.91	0	2184193..2184657	-	154	15838889	-	XF2298	-	low molecular weight phosphotyrosine protein phosphatase
2285	 57.75	0	2184654..2185427	-	257	15838890	-	XF2299	-	3-deoxy-manno-octulosonate cytidylyltransferase
2286	 43.92	-1	2185648..2185836	+	62	15838891	-	XF2300	-	hypothetical protein
2287	 53.80	0	2186143..2186997	+	284	77747592	-	XF2301	-	polysaccharide export protein
2288	 57.98	0	2187092..2188426	-	444	15838893	-	XF2302	-	glutamate-1-semialdehyde aminotransferase
2289	 52.03	0	2188752..2189318	-	188	15838894	-	XF2303	-	transposase
2290	 55.95	0	2189306..2189557	+	83	15838895	-	XF2304	-	hypothetical protein
2291	 38.80	-2	2189780..2190163	+	127	15838896	-	XF2305	-	hypothetical protein
2292	 51.24	0	2190566..2191570	-	334	15838897	-	XF2306	-	delta-aminolevulinic acid dehydratase
2293	 49.00	0	2192194..2192691	+	165	77747593	-	XF2307	-	hypothetical protein
2294	 53.33	0	2192899..2193348	+	149	77747594	-	XF2308	-	hypothetical protein
2295	 51.28	0	2193735..2193890	+	51	15838900	-	XF2309	-	hypothetical protein
2296	 48.74	0	2194042..2194677	-	211	15838901	-	XF2310	-	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase
2297	 55.63	0	2194674..2196557	-	627	15838902	uvrC	XF2311	-	excinuclease ABC subunit C
2298	 49.38	0	2196696..2196857	-	53	15838903	-	XF2312	-	hypothetical protein
2299	 56.97	0	2197200..2197931	+	243	15838904	-	XF2313	-	site-specific DNA-methyltransferase
2300	 56.28	0	2197984..2198532	+	182	15838905	-	XF2314	-	phage-related lysozyme
2301	 59.39	+1	2198525..2198689	+	54	15838906	-	XF2315	-	hypothetical protein
2302	 56.82	0	2198671..2199117	+	148	15838907	-	XF2316	-	hypothetical protein
2303	 59.58	+1	2199119..2199781	+	220	15838908	-	XF2317	-	hypothetical protein
2304	 58.51	+1	2199857..2200690	+	277	15838909	-	XF2318	-	hypothetical protein
2305	 57.50	0	2200719..2200958	+	79	15838910	-	XF2319	-	hypothetical protein
2306	 57.71	0	2200969..2201247	-	92	15838911	-	XF2320	-	hypothetical protein
2307	 38.83	-2	2201483..2201755	-	90	15838912	-	XF2321	-	hypothetical protein
2308	 40.30	-1	2202300..2202500	-	66	15838913	-	XF2322	-	hypothetical protein
2309	 43.83	-1	2202799..2202960	-	53	15838914	-	XF2323	-	hypothetical protein
2310	 54.36	0	2202957..2204321	-	454	15838915	-	XF2324	-	3-phosphoshikimate 1-carboxyvinyltransferase
2311	 50.40	0	2204374..2205498	-	374	15838916	-	XF2325	-	P-protein
2312	 51.24	0	2205578..2206666	-	362	15838917	-	XF2326	-	phosphoserine aminotransferase
2313	 50.12	0	2207240..2208442	+	400	15838918	-	XF2327	-	TonB protein
2314	 51.05	0	2208529..2209713	-	394	15838919	-	XF2328	-	ABC transporter sodium permease
2315	 52.21	0	2209710..2210456	-	248	15838920	-	XF2329	-	sodium ABC transporter ATP-binding protein
2316	 54.14	0	2210453..2212033	-	526	15838921	-	XF2330	-	proteinase
2317	 53.09	0	2212193..2212759	-	188	15838922	-	XF2331	-	dihydrofolate reductase type III
2318	 50.19	0	2212802..2213596	-	264	15838923	thyA	XF2332	-	thymidylate synthase
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.