IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2189	 54.91	0	2090106..2090675	+	189	15838794	-	XF2203	-	elongation factor P
2190	 55.82	0	2090728..2090976	+	82	15838795	-	XF2204	-	hypothetical protein
2191	 56.12	0	2090973..2092337	-	454	15838796	-	XF2205	-	hypothetical protein
2192	 54.43	0	2092565..2093806	+	413	15838797	-	XF2206	-	D-3-phosphoglycerate dehydrogenase
2193	 57.71	0	2093940..2095391	+	483	15838798	-	XF2207	-	cationic amino acid transporter
2194	 57.04	0	2095466..2096899	+	477	15838799	-	XF2208	-	cationic amino acid transporter
2195	 54.49	0	2096904..2097560	+	218	15838800	-	XF2209	-	hypothetical protein
2196	 54.32	0	2097597..2098163	+	188	15838801	-	XF2210	-	dioxygenase
2197	 54.36	0	2098166..2098864	+	232	15838802	-	XF2211	-	enolase-phosphatase
2198	 55.95	0	2098942..2099109	+	55	15838803	-	XF2212	-	hypothetical protein
2199	 57.97	0	2099089..2099709	-	206	15838804	-	XF2213	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2200	 57.24	0	2099702..2100475	-	257	15838805	-	XF2214	-	imidazole glycerol phosphate synthase subunit HisF
2201	 62.16	+1	2100600..2101397	-	265	15838806	-	XF2215	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2202	 61.36	+1	2101394..2101996	-	200	15838807	hisH	XF2216	-	imidazole glycerol phosphate synthase subunit HisH
2203	 57.54	0	2101993..2103120	-	375	15838808	-	XF2217	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
2204	 62.20	+1	2103117..2104214	-	365	15838809	-	XF2218	-	histidinol-phosphate aminotransferase
2205	 61.81	+1	2104211..2105506	-	431	15838810	hisD	XF2219	-	histidinol dehydrogenase
2206	 59.45	+1	2105503..2106417	-	304	15838811	hisG	XF2220	-	ATP phosphoribosyltransferase
2207	 61.36	+1	2106414..2106752	-	112	15838812	-	XF2221	-	hypothetical protein
2208	 55.60	0	2107298..2108698	-	466	15838813	hisS	XF2222	-	histidyl-tRNA synthetase
2209	 61.48	+1	2109013..2110305	-	430	15838814	-	XF2223	-	threonine synthase
2210	 61.51	+1	2110352..2111320	-	322	15838815	-	XF2224	-	homoserine kinase
2211	 57.74	0	2111317..2113803	-	828	15838816	-	XF2225	-	bifunctional aspartokinase I/homeserine dehydrogenase I
2212	 55.21	0	2114312..2115280	-	322	15838817	pyrB	XF2226	-	aspartate carbamoyltransferase catalytic subunit
2213	 60.47	+1	2115285..2115752	-	155	15838818	-	XF2227	-	Holliday junction resolvase-like protein
2214	 55.03	0	2115745..2116311	-	188	15838819	-	XF2228	-	hypothetical protein
2215	 49.74	0	2116415..2116603	+	62	15838820	-	XF2229	-	hypothetical protein
2216	 53.74	0	2116788..2117978	-	396	15838821	-	XF2230	-	penicillin binding protein 6 precursor
2217	 51.04	0	2118264..2118455	-	63	15838822	-	XF2231	-	hypothetical protein
2218	 53.72	0	2118589..2120820	-	743	77747588	-	XF2232	-	catalase/peroxidase
2219	 55.90	0	2121360..2122241	-	293	15838824	-	XF2233	-	DnaJ protein
2220	 50.31	0	2122386..2122868	-	160	15838825	-	XF2234	-	low molecular weight heat shock protein
2221	 58.09	0	2123146..2125536	-	796	15838826	-	XF2235	-	bifunctional penicillin binding protein 1C precursor
2222	 40.94	-1	2125826..2125996	-	56	15838827	-	XF2236	-	hypothetical protein
2223	 51.58	0	2126364..2129240	+	958	15838828	-	XF2237	-	hypothetical protein
2224	 51.85	0	2129442..2129603	+	53	15838829	-	XF2238	-	hypothetical protein
2225	 51.05	0	2130143..2130763	+	206	15838830	-	XF2239	-	RNA polymerase sigma factor RpoE
2226	 53.42	0	2130760..2131491	+	243	15838831	-	XF2240	-	hypothetical protein
2227	 54.30	0	2131589..2133133	+	514	15838832	-	XF2241	-	periplasmic protease
2228	 54.55	0	2133171..2133335	+	54	15838833	-	XF2242	-	hypothetical protein
2229	 52.07	0	2133317..2135125	+	602	15838834	-	XF2243	-	GTP-binding protein LepA
2230	 49.44	0	2135226..2136026	+	266	15838835	-	XF2244	-	signal peptidase I
2231	 39.13	-2	2136023..2136436	+	137	15838836	-	XF2245	-	hypothetical protein
2232	 54.62	0	2136468..2137106	+	212	15838837	rnc	XF2246	-	ribonuclease III
2233	 51.39	0	2137103..2137999	+	298	15838838	era	XF2247	-	GTP-binding protein Era
2234	 53.96	0	2138170..2138901	+	243	15838839	recO	XF2248	-	DNA repair protein RecO
2235	 52.94	0	2139060..2140967	-	635	77747589	-	XF2249	-	1-deoxy-D-xylulose-5-phosphate synthase
2236	 47.26	0	2141319..2141555	+	78	15838841	-	XF2250	-	hypothetical protein
2237	 50.58	0	2141567..2143300	-	577	15838842	actP	XF2251	-	acetate permease
2238	 43.31	-1	2143297..2143677	-	126	15838843	-	XF2252	-	hypothetical protein
2239	 37.74	-2	2143772..2143930	-	52	15838844	-	XF2253	-	hypothetical protein
2240	 48.15	0	2143943..2144077	-	44	15838845	-	XF2254	-	hypothetical protein
2241	 56.33	0	2144143..2146086	+	647	15838846	-	XF2255	-	acetyl-CoA synthetase
2242	 43.92	-1	2146129..2146317	+	62	15838847	-	XF2256	-	hypothetical protein
2243	 54.26	0	2146616..2147308	+	230	15838848	-	XF2257	-	hypothetical protein
2244	 31.30	-2	2147764..2148156	+	130	15838849	-	XF2258	-	hypothetical protein
2245	 49.27	0	2148947..2150521	+	524	15838850	-	XF2259	-	polyvinylalcohol dehydrogenase
2246	 53.07	0	2150826..2152892	-	688	77747590	-	XF2260	-	alanyl dipeptidyl peptidase
2247	 55.40	0	2153316..2155277	-	653	15838852	-	XF2261	-	oligopeptide transporter
2248	 48.89	0	2155270..2155449	-	59	15838853	-	XF2262	-	hypothetical protein
2249	 53.23	0	2155456..2155641	-	61	15838854	-	XF2263	-	hypothetical protein
2250	 51.01	0	2155653..2155850	-	65	15838855	-	XF2264	-	hypothetical protein
2251	 39.46	-2	2155870..2156016	+	48	15838856	-	XF2265	-	hypothetical protein
2252	 56.43	0	2156013..2157536	+	507	15838857	glpD	XF2266	-	glycerol-3-phosphate dehydrogenase
2253	 56.40	0	2157650..2158477	+	275	15838858	-	XF2267	-	glycerol uptake facilitator protein
2254	 56.67	0	2158482..2160032	+	516	15838859	glpK	XF2268	-	glycerol kinase
2255	 55.34	0	2160246..2161013	-	255	15838860	-	XF2269	-	3-alpha-hydroxysteroid dehydrogenase
2256	 57.79	0	2161322..2162188	+	288	15838861	-	XF2270	-	hypothetical protein
2257	 55.15	0	2162380..2162787	+	135	15838862	-	XF2271	-	hypothetical protein
2258	 56.48	0	2162799..2165075	+	758	15838863	-	XF2272	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
2259	 54.29	0	2165142..2165852	+	236	15838864	-	XF2273	-	hypothetical protein
2260	 56.79	0	2165874..2166116	+	80	15838865	-	XF2274	-	hypothetical protein
2261	 62.42	+1	2166120..2166284	-	54	15838866	-	XF2275	-	hypothetical protein
2262	 57.24	0	2166585..2168228	-	547	77747591	-	XF2276	-	peptide synthase
2263	 47.88	0	2168522..2168851	-	109	15838868	-	XF2277	-	hypothetical protein
2264	 52.10	0	2168848..2169609	-	253	15838869	-	XF2278	-	dolichol-phosphate mannosyltransferase
2265	 55.69	0	2169609..2170637	-	342	15838870	-	XF2279	-	nucleotide sugar epimerase
2266	 51.11	0	2170713..2170892	+	59	15838871	-	XF2280	-	hypothetical protein
2267	 55.63	0	2170954..2171886	-	310	15838872	-	XF2281	-	chromosome partitioning protein
2268	 53.58	0	2171886..2172680	-	264	15838873	-	XF2282	-	chromosome partitioning protein
2269	 52.10	0	2172979..2173932	-	317	15838874	-	XF2283	-	hypothetical protein
2270	 46.41	0	2174038..2174274	+	78	15838875	-	XF2284	-	hypothetical protein
2271	 39.76	-1	2174254..2174502	-	82	15838876	-	XF2285	-	hypothetical protein
2272	 51.37	0	2174738..2176018	-	426	161378160	-	XF2286	-	seryl-tRNA synthetase
2273	 55.89	0	2176140..2176835	+	231	15838878	-	XF2287	-	TonB protein
2274	 51.13	0	2177071..2178132	-	353	15838879	-	XF2288	-	phage-related integrase
2275	 52.19	0	2178144..2178440	-	98	15838880	-	XF2289	-	hypothetical protein
2276	 63.58	+1	2178671..2179609	+	312	15838881	-	XF2290	-	hypothetical protein
2277	 62.71	+1	2179606..2180364	+	252	15838882	-	XF2291	-	hypothetical protein
2278	 59.86	+1	2180361..2180639	+	92	15838883	-	XF2292	-	hypothetical protein
2279	 53.40	0	2180641..2180949	-	102	15838884	-	XF2293	-	hypothetical protein
2280	 51.85	0	2180998..2181726	+	242	15838885	-	XF2294	-	hypothetical protein
2281	 58.46	+1	2181723..2183135	+	470	15838886	-	XF2295	-	hypothetical protein
2282	 37.65	-2	2183304..2183465	+	53	15838887	-	XF2296	-	hypothetical protein
2283	 58.39	0	2183736..2184206	+	156	15838888	-	XF2297	-	DNA methylase
2284	 55.91	0	2184193..2184657	-	154	15838889	-	XF2298	-	low molecular weight phosphotyrosine protein phosphatase
2285	 57.75	0	2184654..2185427	-	257	15838890	-	XF2299	-	3-deoxy-manno-octulosonate cytidylyltransferase
2286	 43.92	-1	2185648..2185836	+	62	15838891	-	XF2300	-	hypothetical protein
2287	 53.80	0	2186143..2186997	+	284	77747592	-	XF2301	-	polysaccharide export protein
2288	 57.98	0	2187092..2188426	-	444	15838893	-	XF2302	-	glutamate-1-semialdehyde aminotransferase
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.