IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2127	 49.22	0	2033851..2034945	+	364	15838732	-	XF2141	-	ABC transporter phosphate binding protein
2128	 53.74	0	2035057..2036031	+	324	15838733	-	XF2142	-	ABC transporter phosphate permease
2129	 51.27	0	2036031..2036894	+	287	15838734	-	XF2143	-	ABC transporter phosphate permease
2130	 48.50	0	2036915..2037745	+	276	77747585	-	XF2144	-	phosphate ABC transporter ATP-binding protein
2131	 50.49	0	2037765..2038475	+	236	15838736	-	XF2145	-	phosphate regulon transcriptional regulator
2132	 51.42	0	2038701..2039336	+	211	15838737	-	XF2146	-	ribonuclease T
2133	 35.03	-2	2039646..2039822	-	58	15838738	-	XF2147	-	hypothetical protein
2134	 53.84	0	2039854..2040726	+	290	15838739	ksgA	XF2148	-	dimethyladenosine transferase
2135	 53.91	0	2040763..2041146	+	127	15838740	apaG	XF2149	-	ApaG
2136	 54.04	0	2041161..2042039	+	292	15838741	apaH	XF2150	-	diadenosine tetraphosphatase
2137	 48.55	0	2042614..2043888	+	424	15838742	-	XF2151	-	hypothetical protein
2138	 51.85	0	2043924..2044112	-	62	15838743	-	XF2152	-	hypothetical protein
2139	 53.72	0	2044119..2044898	-	259	15838744	-	XF2153	-	3-deoxy-D-manno-octulosonic-acid kinase
2140	 54.23	0	2044890..2045942	+	350	15838745	-	XF2154	-	saccharide biosynthesis regulatory protein
2141	 46.77	0	2045960..2046346	-	128	15838746	-	XF2155	-	hypothetical protein
2142	 53.39	0	2047227..2047919	+	230	77747586	-	XF2156	-	protein phosphatase
2143	 51.39	0	2047997..2048716	-	239	15838748	-	XF2157	-	DNA polymerase III subunit epsilon
2144	 52.16	0	2048713..2049174	-	153	15838749	rnhA	XF2158	-	ribonuclease H
2145	 52.53	0	2049179..2049829	-	216	77747587	-	XF2159	-	hypothetical protein
2146	 51.61	0	2049841..2050617	+	258	15838751	-	XF2160	-	hydroxyacylglutathione hydrolase
2147	 43.72	-1	2050956..2051186	+	76	15838752	-	XF2161	-	hypothetical protein
2148	 36.05	-2	2051369..2051515	+	48	15838753	-	XF2162	-	hypothetical protein
2149	 30.11	-2	2051630..2051722	-	30	15838754	-	XF2163	-	hypothetical protein
2150	 46.49	0	2052026..2052253	+	75	15838755	-	XF2164	-	hypothetical protein
2151	 53.26	0	2052376..2054694	+	772	15838756	-	XF2165	-	transcription-related protein
2152	 42.86	-1	2054754..2054984	-	76	15838757	-	XF2166	-	hypothetical protein
2153	 47.88	0	2055146..2055310	+	54	15838758	-	XF2167	-	hypothetical protein
2154	 38.89	-2	2055404..2055511	-	35	15838759	-	XF2168	-	hypothetical protein
2155	 57.56	0	2055544..2057640	+	698	15838760	-	XF2169	-	hypothetical protein
2156	 55.93	0	2057735..2058349	+	204	15838761	-	XF2170	-	hypothetical protein
2157	 53.63	0	2058532..2059068	+	178	15838762	-	XF2171	-	inorganic pyrophosphatase
2158	 50.41	0	2059212..2059334	-	40	15838763	-	XF2172	-	hypothetical protein
2159	 47.03	0	2059507..2059725	+	72	15838764	-	XF2173	-	hypothetical protein
2160	 51.23	0	2059817..2060833	-	338	15838765	-	XF2174	-	thioredoxin
2161	 57.59	0	2060828..2061433	+	201	15838766	-	XF2175	-	hypothetical protein
2162	 54.20	0	2061553..2064216	+	887	15838767	leuS	XF2176	-	leucyl-tRNA synthetase
2163	 52.87	0	2064308..2064916	+	202	15838768	-	XF2177	-	hypothetical protein
2164	 54.75	0	2064927..2065958	+	343	15838769	holA	XF2178	-	DNA polymerase III subunit delta
2165	 57.40	0	2065988..2066656	+	222	15838770	nadD	XF2179	-	nicotinic acid mononucleotide adenylyltransferase
2166	 52.80	0	2066674..2067120	+	148	15838771	-	XF2180	-	hypothetical protein
2167	 55.16	0	2067358..2067783	+	141	15838772	-	XF2181	-	hypothetical protein
2168	 52.69	0	2067796..2067981	-	61	15838773	-	XF2182	-	hypothetical protein
2169	 44.87	-1	2068056..2068289	+	77	15838774	-	XF2183	-	hypothetical protein
2170	 52.18	0	2068483..2069607	+	374	15838775	-	XF2184	-	membrane-bound lytic transglycosylase
2171	 54.97	0	2069604..2070851	+	415	15838776	-	XF2185	-	rare lipoprotein A
2172	 43.16	-1	2070975..2071595	-	206	15838777	-	XF2186	-	hypothetical protein
2173	 46.54	0	2071744..2071902	-	52	15838778	-	XF2187	-	hypothetical protein
2174	 39.11	-2	2072103..2072327	+	74	15838779	-	XF2188	-	hypothetical protein
2175	 46.97	0	2072355..2072684	-	109	15838780	-	XF2189	-	hypothetical protein
2176	 42.72	-1	2072932..2073144	-	70	15838781	-	XF2190	-	hypothetical protein
2177	 39.87	-1	2073156..2073308	-	50	15838782	-	XF2191	-	hypothetical protein
2178	 53.81	0	2073320..2074462	-	380	15838783	-	XF2192	-	hypothetical protein
2179	 39.69	-2	2074837..2075229	-	130	15838784	-	XF2193	-	hypothetical protein
2180	 38.37	-2	2075239..2075496	-	85	15838785	-	XF2194	-	hypothetical protein
2181	 39.46	-2	2075742..2076149	-	135	15838786	-	XF2195	-	hypothetical protein
2182	 65.29	+2	2076130..2086458	-	3442	15838787	-	XF2196	-	hemagglutinin-like secreted protein
2183	 54.24	0	2086518..2086871	+	117	15838788	-	XF2197	-	hypothetical protein
2184	 40.30	-1	2086965..2087366	-	133	15838789	-	XF2198	-	hypothetical protein
2185	 39.10	-2	2087371..2087526	-	51	15838790	-	XF2199	-	hypothetical protein
2186	 37.66	-2	2087701..2088093	-	130	15838791	-	XF2200	-	hypothetical protein
2187	 61.35	+1	2088556..2089476	+	306	161378161	prmA	XF2201	-	ribosomal protein L11 methyltransferase
2188	 55.85	0	2089574..2090026	+	150	15838793	-	XF2202	-	hypothetical protein
2189	 54.91	0	2090106..2090675	+	189	15838794	-	XF2203	-	elongation factor P
2190	 55.82	0	2090728..2090976	+	82	15838795	-	XF2204	-	hypothetical protein
2191	 56.12	0	2090973..2092337	-	454	15838796	-	XF2205	-	hypothetical protein
2192	 54.43	0	2092565..2093806	+	413	15838797	-	XF2206	-	D-3-phosphoglycerate dehydrogenase
2193	 57.71	0	2093940..2095391	+	483	15838798	-	XF2207	-	cationic amino acid transporter
2194	 57.04	0	2095466..2096899	+	477	15838799	-	XF2208	-	cationic amino acid transporter
2195	 54.49	0	2096904..2097560	+	218	15838800	-	XF2209	-	hypothetical protein
2196	 54.32	0	2097597..2098163	+	188	15838801	-	XF2210	-	dioxygenase
2197	 54.36	0	2098166..2098864	+	232	15838802	-	XF2211	-	enolase-phosphatase
2198	 55.95	0	2098942..2099109	+	55	15838803	-	XF2212	-	hypothetical protein
2199	 57.97	0	2099089..2099709	-	206	15838804	-	XF2213	-	bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein
2200	 57.24	0	2099702..2100475	-	257	15838805	-	XF2214	-	imidazole glycerol phosphate synthase subunit HisF
2201	 62.16	+1	2100600..2101397	-	265	15838806	-	XF2215	-	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
2202	 61.36	+1	2101394..2101996	-	200	15838807	hisH	XF2216	-	imidazole glycerol phosphate synthase subunit HisH
2203	 57.54	0	2101993..2103120	-	375	15838808	-	XF2217	-	imidazole glycerol-phosphate dehydratase/histidinol phosphatase
2204	 62.20	+1	2103117..2104214	-	365	15838809	-	XF2218	-	histidinol-phosphate aminotransferase
2205	 61.81	+1	2104211..2105506	-	431	15838810	hisD	XF2219	-	histidinol dehydrogenase
2206	 59.45	+1	2105503..2106417	-	304	15838811	hisG	XF2220	-	ATP phosphoribosyltransferase
2207	 61.36	+1	2106414..2106752	-	112	15838812	-	XF2221	-	hypothetical protein
2208	 55.60	0	2107298..2108698	-	466	15838813	hisS	XF2222	-	histidyl-tRNA synthetase
2209	 61.48	+1	2109013..2110305	-	430	15838814	-	XF2223	-	threonine synthase
2210	 61.51	+1	2110352..2111320	-	322	15838815	-	XF2224	-	homoserine kinase
2211	 57.74	0	2111317..2113803	-	828	15838816	-	XF2225	-	bifunctional aspartokinase I/homeserine dehydrogenase I
2212	 55.21	0	2114312..2115280	-	322	15838817	pyrB	XF2226	-	aspartate carbamoyltransferase catalytic subunit
2213	 60.47	+1	2115285..2115752	-	155	15838818	-	XF2227	-	Holliday junction resolvase-like protein
2214	 55.03	0	2115745..2116311	-	188	15838819	-	XF2228	-	hypothetical protein
2215	 49.74	0	2116415..2116603	+	62	15838820	-	XF2229	-	hypothetical protein
2216	 53.74	0	2116788..2117978	-	396	15838821	-	XF2230	-	penicillin binding protein 6 precursor
2217	 51.04	0	2118264..2118455	-	63	15838822	-	XF2231	-	hypothetical protein
2218	 53.72	0	2118589..2120820	-	743	77747588	-	XF2232	-	catalase/peroxidase
2219	 55.90	0	2121360..2122241	-	293	15838824	-	XF2233	-	DnaJ protein
2220	 50.31	0	2122386..2122868	-	160	15838825	-	XF2234	-	low molecular weight heat shock protein
2221	 58.09	0	2123146..2125536	-	796	15838826	-	XF2235	-	bifunctional penicillin binding protein 1C precursor
2222	 40.94	-1	2125826..2125996	-	56	15838827	-	XF2236	-	hypothetical protein
2223	 51.58	0	2126364..2129240	+	958	15838828	-	XF2237	-	hypothetical protein
2224	 51.85	0	2129442..2129603	+	53	15838829	-	XF2238	-	hypothetical protein
2225	 51.05	0	2130143..2130763	+	206	15838830	-	XF2239	-	RNA polymerase sigma factor RpoE
2226	 53.42	0	2130760..2131491	+	243	15838831	-	XF2240	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.