IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2076	 54.56	0	1983861..1984628	-	255	77747583	ppnK	XF2090	-	inorganic polyphosphate/ATP-NAD kinase
2077	 54.11	0	1984713..1989704	-	1663	77747584	-	XF2091	-	hypothetical protein
2078	 48.72	0	1989812..1990006	+	64	15838683	-	XF2092	-	hypothetical protein
2079	 53.46	0	1990486..1991712	+	408	15838684	-	XF2093	-	precursor of drug resistance protein
2080	 51.61	0	1991727..1994894	+	1055	15838685	-	XF2094	-	multidrug-efflux transporter
2081	 51.73	0	1994975..1995610	-	211	15838686	-	XF2095	-	carbonic anhydrase
2082	 53.22	0	1995607..1996506	-	299	15838687	-	XF2096	-	putative GTP cyclohydrolase
2083	 46.12	0	1996752..1997009	+	85	15838688	-	XF2097	-	hypothetical protein
2084	 48.31	0	1997252..1997458	-	68	15838689	-	XF2098	-	hypothetical protein
2085	 54.62	0	1997839..1998726	+	295	15838690	-	XF2099	-	biotin synthesis protein
2086	 52.76	0	1998801..1999706	+	301	15838691	-	XF2100	-	aspartyl/asparaginyl beta-hydroxylase
2087	 52.55	0	2000035..2000643	-	202	15838692	-	XF2101	-	hypothetical protein
2088	 50.62	0	2000640..2000882	-	80	15838693	-	XF2102	-	hypothetical protein
2089	 50.30	0	2001237..2001572	+	111	15838694	-	XF2103	-	hypothetical protein
2090	 45.05	-1	2001754..2001864	+	36	15838695	-	XF2104	-	hypothetical protein
2091	 47.80	0	2001907..2002065	-	52	15838696	-	XF2105	-	hypothetical protein
2092	 57.88	0	2002111..2004000	+	629	15838697	-	XF2106	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2093	 53.99	0	2004188..2004400	-	70	15838698	-	XF2107	-	hypothetical protein
2094	 48.39	0	2005047..2005232	+	61	15838699	-	XF2108	-	hypothetical protein
2095	 63.00	+1	2005406..2005732	-	108	15838700	-	XF2109	-	hypothetical protein
2096	 55.16	0	2006148..2006486	-	112	15838701	-	XF2110	-	hypothetical protein
2097	 32.97	-2	2007425..2007703	+	92	15838702	-	XF2111	-	hypothetical protein
2098	 40.97	-1	2007754..2008146	+	130	15838703	-	XF2112	-	hypothetical protein
2099	 55.29	0	2008224..2008478	-	84	15838704	-	XF2113	-	hypothetical protein
2100	 63.35	+1	2008482..2008994	-	170	15838705	-	XF2114	-	hypothetical protein
2101	 61.78	+1	2008987..2011812	-	941	15838706	-	XF2115	-	hypothetical protein
2102	 62.03	+1	2011802..2012038	-	78	15838707	-	XF2116	-	hypothetical protein
2103	 65.16	+2	2012035..2012565	-	176	15838708	-	XF2117	-	hypothetical protein
2104	 57.49	0	2012590..2013036	-	148	15838709	-	XF2118	-	hypothetical protein
2105	 65.00	+2	2013033..2013512	-	159	15838710	-	XF2119	-	hypothetical protein
2106	 64.50	+1	2013822..2014973	-	383	15838711	-	XF2120	-	hypothetical protein
2107	 62.22	+1	2014957..2016462	-	501	15838712	-	XF2121	-	virulence-associated protein E
2108	 64.58	+1	2016462..2017514	-	350	15838713	-	XF2122	-	hypothetical protein
2109	 64.41	+1	2017713..2017934	-	73	15838714	-	XF2123	-	hypothetical protein
2110	 59.37	+1	2017998..2018600	-	200	15838715	-	XF2124	-	hypothetical protein
2111	 59.80	+1	2018679..2018984	-	101	15838716	-	XF2125	-	hypothetical protein
2112	 56.10	0	2019016..2019261	-	81	15838717	-	XF2126	-	hypothetical protein
2113	 48.53	0	2019346..2020365	+	339	15838718	-	XF2127	-	hypothetical protein
2114	 39.39	-2	2020571..2020735	+	54	15838719	-	XF2128	-	hypothetical protein
2115	 61.04	+1	2020875..2021105	+	76	15838720	-	XF2129	-	hypothetical protein
2116	 56.44	0	2021130..2021354	+	74	15838721	-	XF2130	-	hypothetical protein
2117	 58.26	0	2021351..2021695	+	114	15838722	-	XF2131	-	hypothetical protein
2118	 53.60	0	2021692..2022372	+	226	15838723	-	XF2132	-	hypothetical protein
2119	 54.13	0	2022417..2024354	-	645	15838724	-	XF2133	-	ABC transporter ATP-binding protein
2120	 54.83	0	2024516..2026897	+	793	15838725	-	XF2134	-	ferric enterobactin receptor
2121	 51.23	0	2026987..2027757	-	256	15838726	-	XF2135	-	polyketide synthase (PKS)
2122	 50.88	0	2027916..2028086	+	56	15838727	-	XF2136	-	hypothetical protein
2123	 52.98	0	2028310..2030676	+	788	15838728	-	XF2137	-	ferric enterobactin receptor
2124	 44.05	-1	2030698..2030865	-	55	15838729	-	XF2138	-	hypothetical protein
2125	 50.69	0	2031006..2031149	+	47	15838730	-	XF2139	-	hypothetical protein
2126	 54.92	0	2031755..2033473	+	572	15838731	-	XF2140	-	cation:proton antiporter
2127	 49.22	0	2033851..2034945	+	364	15838732	-	XF2141	-	ABC transporter phosphate binding protein
2128	 53.74	0	2035057..2036031	+	324	15838733	-	XF2142	-	ABC transporter phosphate permease
2129	 51.27	0	2036031..2036894	+	287	15838734	-	XF2143	-	ABC transporter phosphate permease
2130	 48.50	0	2036915..2037745	+	276	77747585	-	XF2144	-	phosphate ABC transporter ATP-binding protein
2131	 50.49	0	2037765..2038475	+	236	15838736	-	XF2145	-	phosphate regulon transcriptional regulator
2132	 51.42	0	2038701..2039336	+	211	15838737	-	XF2146	-	ribonuclease T
2133	 35.03	-2	2039646..2039822	-	58	15838738	-	XF2147	-	hypothetical protein
2134	 53.84	0	2039854..2040726	+	290	15838739	ksgA	XF2148	-	dimethyladenosine transferase
2135	 53.91	0	2040763..2041146	+	127	15838740	apaG	XF2149	-	ApaG
2136	 54.04	0	2041161..2042039	+	292	15838741	apaH	XF2150	-	diadenosine tetraphosphatase
2137	 48.55	0	2042614..2043888	+	424	15838742	-	XF2151	-	hypothetical protein
2138	 51.85	0	2043924..2044112	-	62	15838743	-	XF2152	-	hypothetical protein
2139	 53.72	0	2044119..2044898	-	259	15838744	-	XF2153	-	3-deoxy-D-manno-octulosonic-acid kinase
2140	 54.23	0	2044890..2045942	+	350	15838745	-	XF2154	-	saccharide biosynthesis regulatory protein
2141	 46.77	0	2045960..2046346	-	128	15838746	-	XF2155	-	hypothetical protein
2142	 53.39	0	2047227..2047919	+	230	77747586	-	XF2156	-	protein phosphatase
2143	 51.39	0	2047997..2048716	-	239	15838748	-	XF2157	-	DNA polymerase III subunit epsilon
2144	 52.16	0	2048713..2049174	-	153	15838749	rnhA	XF2158	-	ribonuclease H
2145	 52.53	0	2049179..2049829	-	216	77747587	-	XF2159	-	hypothetical protein
2146	 51.61	0	2049841..2050617	+	258	15838751	-	XF2160	-	hydroxyacylglutathione hydrolase
2147	 43.72	-1	2050956..2051186	+	76	15838752	-	XF2161	-	hypothetical protein
2148	 36.05	-2	2051369..2051515	+	48	15838753	-	XF2162	-	hypothetical protein
2149	 30.11	-2	2051630..2051722	-	30	15838754	-	XF2163	-	hypothetical protein
2150	 46.49	0	2052026..2052253	+	75	15838755	-	XF2164	-	hypothetical protein
2151	 53.26	0	2052376..2054694	+	772	15838756	-	XF2165	-	transcription-related protein
2152	 42.86	-1	2054754..2054984	-	76	15838757	-	XF2166	-	hypothetical protein
2153	 47.88	0	2055146..2055310	+	54	15838758	-	XF2167	-	hypothetical protein
2154	 38.89	-2	2055404..2055511	-	35	15838759	-	XF2168	-	hypothetical protein
2155	 57.56	0	2055544..2057640	+	698	15838760	-	XF2169	-	hypothetical protein
2156	 55.93	0	2057735..2058349	+	204	15838761	-	XF2170	-	hypothetical protein
2157	 53.63	0	2058532..2059068	+	178	15838762	-	XF2171	-	inorganic pyrophosphatase
2158	 50.41	0	2059212..2059334	-	40	15838763	-	XF2172	-	hypothetical protein
2159	 47.03	0	2059507..2059725	+	72	15838764	-	XF2173	-	hypothetical protein
2160	 51.23	0	2059817..2060833	-	338	15838765	-	XF2174	-	thioredoxin
2161	 57.59	0	2060828..2061433	+	201	15838766	-	XF2175	-	hypothetical protein
2162	 54.20	0	2061553..2064216	+	887	15838767	leuS	XF2176	-	leucyl-tRNA synthetase
2163	 52.87	0	2064308..2064916	+	202	15838768	-	XF2177	-	hypothetical protein
2164	 54.75	0	2064927..2065958	+	343	15838769	holA	XF2178	-	DNA polymerase III subunit delta
2165	 57.40	0	2065988..2066656	+	222	15838770	nadD	XF2179	-	nicotinic acid mononucleotide adenylyltransferase
2166	 52.80	0	2066674..2067120	+	148	15838771	-	XF2180	-	hypothetical protein
2167	 55.16	0	2067358..2067783	+	141	15838772	-	XF2181	-	hypothetical protein
2168	 52.69	0	2067796..2067981	-	61	15838773	-	XF2182	-	hypothetical protein
2169	 44.87	-1	2068056..2068289	+	77	15838774	-	XF2183	-	hypothetical protein
2170	 52.18	0	2068483..2069607	+	374	15838775	-	XF2184	-	membrane-bound lytic transglycosylase
2171	 54.97	0	2069604..2070851	+	415	15838776	-	XF2185	-	rare lipoprotein A
2172	 43.16	-1	2070975..2071595	-	206	15838777	-	XF2186	-	hypothetical protein
2173	 46.54	0	2071744..2071902	-	52	15838778	-	XF2187	-	hypothetical protein
2174	 39.11	-2	2072103..2072327	+	74	15838779	-	XF2188	-	hypothetical protein
2175	 46.97	0	2072355..2072684	-	109	15838780	-	XF2189	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.