IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2012	 54.62	0	1930969..1931682	+	237	15838617	-	XF2023	-	hypothetical protein
2013	 58.36	0	1931814..1932812	+	332	15838618	-	XF2024	-	hypothetical protein
2014	 52.01	0	1932880..1933971	+	363	15838619	-	XF2025	-	DNA primase
2015	 38.89	-2	1933975..1934082	+	35	15838620	-	XF2026	-	hypothetical protein
2016	 41.07	-1	1934189..1934821	-	210	15838621	-	XF2027	-	hypothetical protein
2017	 52.87	0	1934942..1935499	-	185	15838622	-	XF2028	-	DNA invertase
2018	 54.40	0	1935689..1936063	-	124	15838623	-	XF2029	-	hypothetical protein
2019	 54.26	0	1936060..1936341	-	93	15838624	-	XF2030	-	hypothetical protein
2020	 52.78	0	1936530..1936781	+	83	15838625	-	XF2031	-	plasmid stabilization protein
2021	 57.61	0	1936778..1937086	+	102	15838626	-	XF2032	-	plasmid stabilization protein
2022	 49.55	0	1937083..1937304	+	73	15838627	-	XF2033	-	hypothetical protein
2023	 53.53	0	1937477..1938778	-	433	15838628	-	XF2034	-	hypothetical protein
2024	 60.00	+1	1938855..1939139	-	94	15838629	-	XF2035	-	hypothetical protein
2025	 54.81	0	1939136..1940029	-	297	15838630	-	XF2036	-	hypothetical protein
2026	 57.20	0	1940026..1941282	-	418	15838631	-	XF2037	-	hypothetical protein
2027	 59.60	+1	1941263..1941913	-	216	15838632	-	XF2038	-	transcriptional regulator
2028	 57.23	0	1941921..1942778	-	285	15838633	-	XF2039	-	hypothetical protein
2029	 56.58	0	1942781..1943881	-	366	15838634	-	XF2040	-	hypothetical protein
2030	 51.97	0	1943886..1944647	-	253	15838635	-	XF2041	-	hypothetical protein
2031	 53.50	0	1944658..1945386	-	242	15838636	-	XF2042	-	hypothetical protein
2032	 63.66	+1	1945929..1946294	-	121	15838637	-	XF2043	-	hypothetical protein
2033	 46.72	0	1947062..1947763	-	233	15838638	-	XF2044	-	hypothetical protein
2034	 50.83	0	1947827..1948432	-	201	15838639	-	XF2045	-	conjugal transfer protein
2035	 53.84	0	1948438..1949832	-	464	15838640	-	XF2046	-	conjugal transfer protein
2036	 50.21	0	1949836..1950072	-	78	15838641	-	XF2047	-	hypothetical protein
2037	 52.46	0	1950881..1952281	-	466	15838642	-	XF2049	-	conjugal transfer protein
2038	 53.25	0	1952287..1952763	-	158	15838643	-	XF2050	-	conjugal transfer protein
2039	 52.53	0	1952766..1953656	-	296	15838644	-	XF2051	-	conjugal transfer protein
2040	 49.23	0	1953673..1954389	-	238	15838645	-	XF2052	-	conjugal transfer protein
2041	 50.47	0	1956924..1957244	-	106	15838646	-	XF2054	-	conjugal transfer protein
2042	 50.34	0	1957247..1957681	-	144	15838647	-	XF2055	-	conjugal transfer protein
2043	 50.34	0	1957653..1957946	-	97	15838648	-	XF2056	-	conjugal transfer protein
2044	 49.38	0	1957985..1958146	+	53	15838649	-	XF2057	-	hypothetical protein
2045	 50.28	0	1958143..1958679	+	178	15838650	-	XF2058	-	conjugal transfer protein
2046	 51.85	0	1958708..1960765	+	685	15838651	-	XF2059	-	conjugal transfer protein
2047	 50.68	0	1960762..1961130	+	122	15838652	-	XF2060	-	conjugal transfer protein
2048	 50.17	0	1961772..1965251	+	1159	77747581	-	XF2061	-	DNA primase
2049	 58.57	+1	1965266..1965475	+	69	15838654	-	XF2062	-	transcriptional repressor
2050	 51.39	0	1966034..1966249	-	71	15838655	-	XF2064	-	hypothetical protein
2051	 50.74	0	1966289..1966558	-	89	15838656	-	XF2065	-	hypothetical protein
2052	 57.28	0	1966667..1966975	-	102	15838657	-	XF2066	-	hypothetical protein
2053	 59.71	+1	1966979..1967251	-	90	15838658	-	XF2067	-	hypothetical protein
2054	 62.28	+1	1967248..1967703	-	151	15838659	-	XF2068	-	hypothetical protein
2055	 43.51	-1	1968283..1968567	-	94	15838660	-	XF2069	-	hypothetical protein
2056	 55.91	0	1969111..1969296	-	61	15838661	-	XF2070	-	hypothetical protein
2057	 59.67	+1	1969289..1969531	-	80	15838662	-	XF2071	-	hypothetical protein
2058	 39.89	-1	1969569..1969751	+	60	15838663	-	XF2072	-	hypothetical protein
2059	 57.28	0	1969791..1970003	-	70	15838664	-	XF2073	-	hypothetical protein
2060	 55.89	0	1970188..1970484	-	98	15838665	-	XF2074	-	hypothetical protein
2061	 57.71	0	1970472..1970750	-	92	15838666	-	XF2075	-	hypothetical protein
2062	 52.12	0	1971038..1971202	+	54	15838667	-	XF2076	-	hypothetical protein
2063	 38.64	-2	1971533..1972192	+	219	15838668	-	XF2077	-	hypothetical protein
2064	 35.32	-2	1972173..1972574	+	133	15838669	-	XF2078	-	hypothetical protein
2065	 50.51	0	1972694..1973083	+	129	15838670	-	XF2079	-	hypothetical protein
2066	 57.45	0	1972992..1973273	-	93	15838671	-	XF2080	-	hypothetical protein
2067	 58.62	+1	1973260..1973520	-	86	15838672	-	XF2081	-	DNA-damage-inducible protein
2068	 50.93	0	1973850..1974656	-	268	15838673	-	XF2082	-	short chain dehydrogenase
2069	 58.86	+1	1974702..1977764	-	1020	15838674	-	XF2083	-	cation efflux system protein
2070	 56.91	0	1977761..1978867	-	368	15838675	-	XF2084	-	component of multidrug efflux system
2071	 50.65	0	1978950..1979567	-	205	15838676	-	XF2085	-	AcrR family transcriptional regulator
2072	 41.75	-1	1980176..1980769	+	197	15838677	-	XF2086	-	hypothetical protein
2073	 48.15	0	1981669..1981938	-	89	15838678	-	XF2087	-	hypothetical protein
2074	 50.00	0	1982043..1982492	-	149	77747582	-	XF2088	-	hypothetical protein
2075	 56.56	0	1982816..1983775	-	319	15838680	-	XF2089	-	5'-nucleotidase
2076	 54.56	0	1983861..1984628	-	255	77747583	ppnK	XF2090	-	inorganic polyphosphate/ATP-NAD kinase
2077	 54.11	0	1984713..1989704	-	1663	77747584	-	XF2091	-	hypothetical protein
2078	 48.72	0	1989812..1990006	+	64	15838683	-	XF2092	-	hypothetical protein
2079	 53.46	0	1990486..1991712	+	408	15838684	-	XF2093	-	precursor of drug resistance protein
2080	 51.61	0	1991727..1994894	+	1055	15838685	-	XF2094	-	multidrug-efflux transporter
2081	 51.73	0	1994975..1995610	-	211	15838686	-	XF2095	-	carbonic anhydrase
2082	 53.22	0	1995607..1996506	-	299	15838687	-	XF2096	-	putative GTP cyclohydrolase
2083	 46.12	0	1996752..1997009	+	85	15838688	-	XF2097	-	hypothetical protein
2084	 48.31	0	1997252..1997458	-	68	15838689	-	XF2098	-	hypothetical protein
2085	 54.62	0	1997839..1998726	+	295	15838690	-	XF2099	-	biotin synthesis protein
2086	 52.76	0	1998801..1999706	+	301	15838691	-	XF2100	-	aspartyl/asparaginyl beta-hydroxylase
2087	 52.55	0	2000035..2000643	-	202	15838692	-	XF2101	-	hypothetical protein
2088	 50.62	0	2000640..2000882	-	80	15838693	-	XF2102	-	hypothetical protein
2089	 50.30	0	2001237..2001572	+	111	15838694	-	XF2103	-	hypothetical protein
2090	 45.05	-1	2001754..2001864	+	36	15838695	-	XF2104	-	hypothetical protein
2091	 47.80	0	2001907..2002065	-	52	15838696	-	XF2105	-	hypothetical protein
2092	 57.88	0	2002111..2004000	+	629	15838697	-	XF2106	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2093	 53.99	0	2004188..2004400	-	70	15838698	-	XF2107	-	hypothetical protein
2094	 48.39	0	2005047..2005232	+	61	15838699	-	XF2108	-	hypothetical protein
2095	 63.00	+1	2005406..2005732	-	108	15838700	-	XF2109	-	hypothetical protein
2096	 55.16	0	2006148..2006486	-	112	15838701	-	XF2110	-	hypothetical protein
2097	 32.97	-2	2007425..2007703	+	92	15838702	-	XF2111	-	hypothetical protein
2098	 40.97	-1	2007754..2008146	+	130	15838703	-	XF2112	-	hypothetical protein
2099	 55.29	0	2008224..2008478	-	84	15838704	-	XF2113	-	hypothetical protein
2100	 63.35	+1	2008482..2008994	-	170	15838705	-	XF2114	-	hypothetical protein
2101	 61.78	+1	2008987..2011812	-	941	15838706	-	XF2115	-	hypothetical protein
2102	 62.03	+1	2011802..2012038	-	78	15838707	-	XF2116	-	hypothetical protein
2103	 65.16	+2	2012035..2012565	-	176	15838708	-	XF2117	-	hypothetical protein
2104	 57.49	0	2012590..2013036	-	148	15838709	-	XF2118	-	hypothetical protein
2105	 65.00	+2	2013033..2013512	-	159	15838710	-	XF2119	-	hypothetical protein
2106	 64.50	+1	2013822..2014973	-	383	15838711	-	XF2120	-	hypothetical protein
2107	 62.22	+1	2014957..2016462	-	501	15838712	-	XF2121	-	virulence-associated protein E
2108	 64.58	+1	2016462..2017514	-	350	15838713	-	XF2122	-	hypothetical protein
2109	 64.41	+1	2017713..2017934	-	73	15838714	-	XF2123	-	hypothetical protein
2110	 59.37	+1	2017998..2018600	-	200	15838715	-	XF2124	-	hypothetical protein
2111	 59.80	+1	2018679..2018984	-	101	15838716	-	XF2125	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.