IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1979	 53.46	0	1903620..1904255	-	211	15838584	-	XF1990	-	thioredoxin
1980	 42.66	-1	1904318..1904671	-	117	15838585	-	XF1991	-	hypothetical protein
1981	 57.06	0	1905284..1906480	+	398	15838586	-	XF1992	-	GTP cyclohydrolase
1982	 54.59	0	1906829..1907863	-	344	15838587	-	XF1993	-	hypothetical protein
1983	 54.57	0	1907860..1908735	-	291	15838588	-	XF1994	-	beta 1,4 glucosyltransferase
1984	 53.77	0	1908774..1910045	-	423	15838589	-	XF1995	-	hypothetical protein
1985	 54.33	0	1910530..1910910	+	126	15838590	-	XF1996	-	PbsX family transcriptional regulator
1986	 53.64	0	1910962..1911621	+	219	15838591	-	XF1997	-	hypothetical protein
1987	 50.55	0	1911707..1911979	+	90	15838592	fis	XF1998	-	DNA-binding protein Fis
1988	 55.10	0	1912154..1913242	-	362	15838593	-	XF1999	-	branched-chain amino acid aminotransferase
1989	 51.27	0	1913316..1913867	-	183	77747576	-	XF2000	-	hypothetical protein
1990	 55.87	0	1913995..1914420	+	141	15838595	-	XF2001	-	hypothetical protein
1991	 48.15	0	1914667..1914828	-	53	15838596	-	XF2002	-	hypothetical protein
1992	 48.72	0	1914944..1915177	-	77	15838597	-	XF2003	-	hypothetical protein
1993	 52.45	0	1915396..1916049	+	217	15838598	-	XF2004	-	hypothetical protein
1994	 53.21	0	1916095..1917432	-	445	77747577	-	XF2005	-	hypothetical protein
1995	 47.53	0	1917412..1917573	+	53	15838600	-	XF2006	-	hypothetical protein
1996	 54.86	0	1917643..1918218	+	191	15838601	-	XF2007	-	hypothetical protein
1997	 54.13	0	1918400..1919053	+	217	15838602	-	XF2008	-	hypothetical protein
1998	 53.69	0	1919177..1920517	-	446	15838603	-	XF2009	-	aminopeptidase P
1999	 53.58	0	1920514..1921071	-	185	15838604	-	XF2010	-	hypothetical protein
2000	 51.35	0	1921264..1921485	+	73	15838605	-	XF2011	-	hypothetical protein
2001	 53.67	0	1921482..1921781	+	99	15838606	-	XF2012	-	hypothetical protein
2002	 56.70	0	1922283..1922894	+	203	15838607	-	XF2013	-	hypothetical protein
2003	 53.60	0	1922915..1923358	+	147	15838608	-	XF2014	-	hypothetical protein
2004	 53.40	0	1923421..1924068	+	215	77747578	-	XF2015	-	ribose-5-phosphate isomerase A
2005	 44.44	-1	1924286..1924501	+	71	15838610	-	XF2016	-	hypothetical protein
2006	 47.29	0	1924521..1925093	-	190	15838611	-	XF2017	-	hypothetical protein
2007	 46.03	0	1925322..1925447	+	41	15838612	-	XF2018	-	hypothetical protein
2008	 51.16	0	1925444..1927081	-	545	77747579	-	XF2019	-	Na+:H+ antiporter
2009	 52.19	0	1927441..1927737	+	98	15838614	-	XF2020	-	hypothetical protein
2010	 41.72	-1	1928048..1929346	-	432	77747580	-	XF2021	-	hypothetical protein
2011	 56.85	0	1929563..1930999	+	478	161378162	sbcB	XF2022	-	exonuclease I
2012	 54.62	0	1930969..1931682	+	237	15838617	-	XF2023	-	hypothetical protein
2013	 58.36	0	1931814..1932812	+	332	15838618	-	XF2024	-	hypothetical protein
2014	 52.01	0	1932880..1933971	+	363	15838619	-	XF2025	-	DNA primase
2015	 38.89	-2	1933975..1934082	+	35	15838620	-	XF2026	-	hypothetical protein
2016	 41.07	-1	1934189..1934821	-	210	15838621	-	XF2027	-	hypothetical protein
2017	 52.87	0	1934942..1935499	-	185	15838622	-	XF2028	-	DNA invertase
2018	 54.40	0	1935689..1936063	-	124	15838623	-	XF2029	-	hypothetical protein
2019	 54.26	0	1936060..1936341	-	93	15838624	-	XF2030	-	hypothetical protein
2020	 52.78	0	1936530..1936781	+	83	15838625	-	XF2031	-	plasmid stabilization protein
2021	 57.61	0	1936778..1937086	+	102	15838626	-	XF2032	-	plasmid stabilization protein
2022	 49.55	0	1937083..1937304	+	73	15838627	-	XF2033	-	hypothetical protein
2023	 53.53	0	1937477..1938778	-	433	15838628	-	XF2034	-	hypothetical protein
2024	 60.00	+1	1938855..1939139	-	94	15838629	-	XF2035	-	hypothetical protein
2025	 54.81	0	1939136..1940029	-	297	15838630	-	XF2036	-	hypothetical protein
2026	 57.20	0	1940026..1941282	-	418	15838631	-	XF2037	-	hypothetical protein
2027	 59.60	+1	1941263..1941913	-	216	15838632	-	XF2038	-	transcriptional regulator
2028	 57.23	0	1941921..1942778	-	285	15838633	-	XF2039	-	hypothetical protein
2029	 56.58	0	1942781..1943881	-	366	15838634	-	XF2040	-	hypothetical protein
2030	 51.97	0	1943886..1944647	-	253	15838635	-	XF2041	-	hypothetical protein
2031	 53.50	0	1944658..1945386	-	242	15838636	-	XF2042	-	hypothetical protein
2032	 63.66	+1	1945929..1946294	-	121	15838637	-	XF2043	-	hypothetical protein
2033	 46.72	0	1947062..1947763	-	233	15838638	-	XF2044	-	hypothetical protein
2034	 50.83	0	1947827..1948432	-	201	15838639	-	XF2045	-	conjugal transfer protein
2035	 53.84	0	1948438..1949832	-	464	15838640	-	XF2046	-	conjugal transfer protein
2036	 50.21	0	1949836..1950072	-	78	15838641	-	XF2047	-	hypothetical protein
2037	 52.46	0	1950881..1952281	-	466	15838642	-	XF2049	-	conjugal transfer protein
2038	 53.25	0	1952287..1952763	-	158	15838643	-	XF2050	-	conjugal transfer protein
2039	 52.53	0	1952766..1953656	-	296	15838644	-	XF2051	-	conjugal transfer protein
2040	 49.23	0	1953673..1954389	-	238	15838645	-	XF2052	-	conjugal transfer protein
2041	 50.47	0	1956924..1957244	-	106	15838646	-	XF2054	-	conjugal transfer protein
2042	 50.34	0	1957247..1957681	-	144	15838647	-	XF2055	-	conjugal transfer protein
2043	 50.34	0	1957653..1957946	-	97	15838648	-	XF2056	-	conjugal transfer protein
2044	 49.38	0	1957985..1958146	+	53	15838649	-	XF2057	-	hypothetical protein
2045	 50.28	0	1958143..1958679	+	178	15838650	-	XF2058	-	conjugal transfer protein
2046	 51.85	0	1958708..1960765	+	685	15838651	-	XF2059	-	conjugal transfer protein
2047	 50.68	0	1960762..1961130	+	122	15838652	-	XF2060	-	conjugal transfer protein
2048	 50.17	0	1961772..1965251	+	1159	77747581	-	XF2061	-	DNA primase
2049	 58.57	+1	1965266..1965475	+	69	15838654	-	XF2062	-	transcriptional repressor
2050	 51.39	0	1966034..1966249	-	71	15838655	-	XF2064	-	hypothetical protein
2051	 50.74	0	1966289..1966558	-	89	15838656	-	XF2065	-	hypothetical protein
2052	 57.28	0	1966667..1966975	-	102	15838657	-	XF2066	-	hypothetical protein
2053	 59.71	+1	1966979..1967251	-	90	15838658	-	XF2067	-	hypothetical protein
2054	 62.28	+1	1967248..1967703	-	151	15838659	-	XF2068	-	hypothetical protein
2055	 43.51	-1	1968283..1968567	-	94	15838660	-	XF2069	-	hypothetical protein
2056	 55.91	0	1969111..1969296	-	61	15838661	-	XF2070	-	hypothetical protein
2057	 59.67	+1	1969289..1969531	-	80	15838662	-	XF2071	-	hypothetical protein
2058	 39.89	-1	1969569..1969751	+	60	15838663	-	XF2072	-	hypothetical protein
2059	 57.28	0	1969791..1970003	-	70	15838664	-	XF2073	-	hypothetical protein
2060	 55.89	0	1970188..1970484	-	98	15838665	-	XF2074	-	hypothetical protein
2061	 57.71	0	1970472..1970750	-	92	15838666	-	XF2075	-	hypothetical protein
2062	 52.12	0	1971038..1971202	+	54	15838667	-	XF2076	-	hypothetical protein
2063	 38.64	-2	1971533..1972192	+	219	15838668	-	XF2077	-	hypothetical protein
2064	 35.32	-2	1972173..1972574	+	133	15838669	-	XF2078	-	hypothetical protein
2065	 50.51	0	1972694..1973083	+	129	15838670	-	XF2079	-	hypothetical protein
2066	 57.45	0	1972992..1973273	-	93	15838671	-	XF2080	-	hypothetical protein
2067	 58.62	+1	1973260..1973520	-	86	15838672	-	XF2081	-	DNA-damage-inducible protein
2068	 50.93	0	1973850..1974656	-	268	15838673	-	XF2082	-	short chain dehydrogenase
2069	 58.86	+1	1974702..1977764	-	1020	15838674	-	XF2083	-	cation efflux system protein
2070	 56.91	0	1977761..1978867	-	368	15838675	-	XF2084	-	component of multidrug efflux system
2071	 50.65	0	1978950..1979567	-	205	15838676	-	XF2085	-	AcrR family transcriptional regulator
2072	 41.75	-1	1980176..1980769	+	197	15838677	-	XF2086	-	hypothetical protein
2073	 48.15	0	1981669..1981938	-	89	15838678	-	XF2087	-	hypothetical protein
2074	 50.00	0	1982043..1982492	-	149	77747582	-	XF2088	-	hypothetical protein
2075	 56.56	0	1982816..1983775	-	319	15838680	-	XF2089	-	5'-nucleotidase
2076	 54.56	0	1983861..1984628	-	255	77747583	ppnK	XF2090	-	inorganic polyphosphate/ATP-NAD kinase
2077	 54.11	0	1984713..1989704	-	1663	77747584	-	XF2091	-	hypothetical protein
2078	 48.72	0	1989812..1990006	+	64	15838683	-	XF2092	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.