IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
147	 53.66	0	149378..151138	-	586	15836752	argS	XF0147	-	arginyl-tRNA synthetase
148	 57.08	0	151195..151893	-	232	15836753	radC	XF0148	-	DNA repair protein RadC
149	 55.85	0	151968..153197	+	409	15836754	-	XF0149	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
150	 54.06	0	153194..153661	+	155	15836755	dut	XF0150	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
151	 51.90	0	154644..156038	+	464	77747490	-	XF0151	-	phosphomannomutase
152	 51.66	0	156052..156624	-	190	15836757	-	XF0152	-	hypothetical protein
153	 54.09	0	156755..157414	-	219	15836758	pyrE	XF0153	-	orotate phosphoribosyltransferase
154	 44.23	-1	157666..158133	-	155	15836759	-	XF0154	-	hypothetical protein
155	 34.23	-2	158177..159064	+	295	15836760	-	XF0155	-	hypothetical protein
156	 42.28	-1	159327..160142	-	271	15836761	-	XF0156	-	cysteine protease
157	 48.44	0	160688..160879	-	63	15836762	-	XF0157	-	hypothetical protein
158	 44.65	-1	161214..161372	+	52	15836763	-	XF0158	-	hypothetical protein
159	 43.02	-1	161369..161719	+	116	15836764	-	XF0159	-	hypothetical protein
160	 43.96	-1	161774..162328	+	184	15836765	-	XF0160	-	hypothetical protein
161	 44.56	-1	162520..164328	+	602	15836766	-	XF0161	-	hypothetical protein
162	 41.48	-1	164426..164560	-	44	15836767	-	XF0162	-	hypothetical protein
163	 44.79	-1	164881..164976	+	31	15836768	-	XF0163	-	hypothetical protein
164	 48.44	0	165137..165937	+	266	15836769	-	XF0164	-	exodeoxyribonuclease
165	 48.30	0	165934..167463	+	509	15836770	-	XF0165	-	beta-lactamase induction signal transducer protein
166	 56.98	0	167622..168767	-	381	15836771	anmK	XF0166	-	anhydro-N-acetylmuramic acid kinase
167	 49.86	0	168828..170243	-	471	77747491	-	XF0167	-	hypothetical protein
168	 41.88	-1	170178..170294	+	38	15836773	-	XF0168	-	hypothetical protein
169	 47.18	0	170444..171700	+	418	15836774	-	XF0169	-	tyrosyl-tRNA synthetase
170	 52.33	0	177524..178339	+	271	15836775	-	XF0170	-	formamidopyrimidine-DNA glycosylase
171	 47.11	0	178471..179319	-	282	15836776	-	XF0171	-	hypothetical protein
172	 43.92	-1	179767..181674	+	635	77747492	-	XF0172	-	hypothetical protein
173	 50.93	0	182075..182830	-	251	15836778	fabG	XF0173	-	3-ketoacyl-(acyl-carrier-protein) reductase
174	 49.61	0	183329..184975	+	548	15836779	prfC	XF0174	-	peptide chain release factor 3
175	 50.39	0	185058..185702	+	214	15836780	-	XF0175	-	hemolysin III protein
176	 51.28	0	185927..187063	-	378	15836781	-	XF0176	-	sugar transferase
177	 52.11	0	187211..187993	-	260	15836782	-	XF0177	-	hypothetical protein
178	 49.10	0	188341..189114	+	257	15836783	-	XF0178	-	hypothetical protein
179	 48.39	0	189124..189216	+	30	15836784	-	XF0179	-	hypothetical protein
180	 45.45	-1	189953..190414	+	153	15836785	-	XF0180	-	hypothetical protein
181	 48.74	0	191779..192174	-	131	161378178	-	XF0181	-	glycine cleavage system protein H
182	 47.41	0	192282..192416	-	44	15836787	-	XF0182	-	hypothetical protein
183	 51.67	0	192696..193802	-	368	15836788	gcvT	XF0183	-	glycine cleavage system aminomethyltransferase T
184	 51.49	0	193945..194379	-	144	15836789	-	XF0184	-	hypothetical protein
185	 51.08	0	194380..195393	-	337	15836790	-	XF0185	-	hypothetical protein
186	 53.84	0	195671..196504	-	277	15836791	mazG	XF0186	-	nucleoside triphosphate pyrophosphohydrolase
187	 56.30	0	196538..197338	-	266	77747493	-	XF0187	-	sulfite synthesis pathway protein
188	 54.66	0	197335..197892	-	185	15836793	nudE	XF0188	-	ADP-ribose diphosphatase NudE
189	 55.85	0	197922..199382	+	486	15836794	-	XF0189	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
190	 53.47	0	199373..200107	+	244	15836795	-	XF0190	-	hypothetical protein
191	 29.63	-2	200292..200399	-	35	15836796	-	XF0191	-	hypothetical protein
192	 52.27	0	201673..203013	+	446	15836797	-	XF0192	-	ATP-dependent RNA helicase
193	 48.66	0	203079..203450	+	123	15836798	-	XF0193	-	6-pyruvoyl tetrahydrobiopterin synthase
194	 38.99	-2	203611..203769	+	52	15836799	-	XF0194	-	hypothetical protein
195	 45.59	-1	203937..204140	+	67	15836800	-	XF0195	-	hypothetical protein
196	 45.52	-1	204523..205047	-	174	15836801	-	XF0196	-	hypothetical protein
197	 52.94	0	205540..206202	+	220	15836802	-	XF0197	-	hypothetical protein
198	 39.39	-2	206470..206634	+	54	15836803	-	XF0198	-	hypothetical protein
199	 54.52	0	206814..207521	-	235	15836804	-	XF0199	-	hypothetical protein
200	 38.54	-2	207720..207815	-	31	15836805	-	XF0200	-	hypothetical protein
201	 53.00	0	207957..208556	-	199	15836806	-	XF0201	-	hypothetical protein
202	 53.86	0	208621..209073	+	150	15836807	-	XF0202	-	hypothetical protein
203	 52.29	0	209239..210198	-	319	15836808	-	XF0203	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
204	 54.66	0	210293..213874	-	1193	77747494	dnaE	XF0204	-	DNA polymerase III subunit alpha
205	 54.80	0	214163..215089	-	308	15836810	hemH	XF0205	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
206	 46.08	0	215170..215271	-	33	15836811	-	XF0206	-	hypothetical protein
207	 52.38	0	215580..215957	+	125	15836812	-	XF0207	-	hypothetical protein
208	 52.83	0	216002..216673	+	223	77747495	-	XF0208	-	ribulose-phosphate 3-epimerase
209	 44.61	-1	217032..217439	-	135	15836814	-	XF0209	-	hypothetical protein
210	 51.71	0	217584..219047	+	487	15836815	-	XF0210	-	anthranilate synthase component I
211	 49.40	0	219202..219786	+	194	15836816	-	XF0211	-	anthranilate synthase component II
212	 53.72	0	219855..220889	+	344	15836817	-	XF0212	-	anthranilate phosphoribosyltransferase
213	 50.69	0	220968..221762	+	264	15836818	trpC	XF0213	-	indole-3-glycerol-phosphate synthase
214	 52.70	0	221759..222481	+	240	15836819	-	XF0214	-	hypothetical protein
215	 46.78	0	223150..223320	-	56	15836820	-	XF0215	-	hypothetical protein
216	 43.39	-1	223451..223957	+	168	15836821	-	XF0216	-	MarR family transcriptional regulator
217	 47.44	0	224149..224304	-	51	15836822	-	XF0217	-	hypothetical protein
218	 39.39	-2	225250..225348	+	32	15836823	-	XF0218	-	hypothetical protein
219	 47.89	0	225511..225723	-	70	15836824	-	XF0219	-	hypothetical protein
220	 56.86	0	225879..227081	+	400	15836825	-	XF0220	-	proline dipeptidase
221	 56.79	0	227254..229095	+	613	15836826	-	XF0221	-	hypothetical protein
222	 54.02	0	229134..230888	+	584	15836827	-	XF0222	-	hypothetical protein
223	 54.37	0	231342..232496	+	384	161378177	tgt	XF0223	-	queuine tRNA-ribosyltransferase
224	 50.14	0	232607..232969	+	120	15836829	yajC	XF0224	-	preprotein translocase subunit YajC
225	 51.17	0	233036..234880	+	614	15836830	secD	XF0225	-	preprotein translocase subunit SecD
226	 51.24	0	234900..235865	+	321	15836831	secF	XF0226	-	preprotein translocase subunit SecF
227	 53.24	0	236195..237460	+	421	15836832	-	XF0227	-	polynucleotide adenyltransferase
228	 55.49	0	237460..237978	+	172	15836833	-	XF0228	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
229	 55.07	0	238011..238829	+	272	161378176	panB	XF0229	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
230	 53.19	0	238826..239671	+	281	15836835	panC	XF0230	-	pantoate--beta-alanine ligase
231	 49.87	0	239754..240134	+	126	77747496	-	XF0231	-	aspartate alpha-decarboxylase
232	 52.29	0	240138..241646	+	502	15836837	pgi	XF0232	-	glucose-6-phosphate isomerase
233	 48.15	0	243718..244365	+	215	15836838	-	XF0233	-	hypothetical protein
234	 51.06	0	244362..245873	+	503	15836839	nusA	XF0234	-	transcription elongation factor NusA
235	 52.30	0	245969..248647	+	892	15836840	infB	XF0235	-	translation initiation factor IF-2
236	 50.53	0	248755..249132	+	125	15836841	rbfA	XF0236	-	ribosome-binding factor A
237	 52.04	0	249223..250131	+	302	15836842	truB	XF0237	-	tRNA pseudouridine synthase B
238	 45.21	-1	250302..250562	+	86	15836843	rpsO	XF0238	-	30S ribosomal protein S15
239	 49.86	0	250660..252819	+	719	15836844	-	XF0239	-	polynucleotide phosphorylase/polyadenylase
240	 51.98	0	252969..253397	-	142	15836845	-	XF0240	-	hypothetical protein
241	 51.02	0	253512..254393	+	293	15836846	-	XF0241	-	hypothetical protein
242	 42.22	-1	254467..254691	-	74	15836847	-	XF0242	-	hypothetical protein
243	 53.73	0	255709..258792	-	1027	15836848	-	XF0243	-	acriflavin resistance protein
244	 57.84	0	258789..259898	-	369	15836849	-	XF0244	-	membrane fusion protein
245	 50.94	0	259951..260109	-	52	15836850	-	XF0245	-	hypothetical protein
246	 43.64	-1	260122..260286	-	54	15836851	-	XF0246	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.