IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1892	 46.21	0	1806625..1807059	-	144	15838497	-	XF1899	-	TolR protein
1893	 51.29	0	1807093..1807866	-	257	15838498	-	XF1900	-	TolQ protein
1894	 51.45	0	1807890..1808336	-	148	15838499	-	XF1901	-	hypothetical protein
1895	 52.42	0	1808333..1809364	-	343	15838500	ruvB	XF1902	-	Holliday junction DNA helicase B
1896	 48.35	0	1809426..1811330	-	634	15838501	-	XF1903	-	potassium uptake protein
1897	 51.11	0	1811385..1811969	-	194	15838502	ruvA	XF1904	-	Holliday junction DNA helicase motor protein
1898	 52.30	0	1812055..1812576	-	173	161378163	ruvC	XF1905	-	Holliday junction resolvase
1899	 48.71	0	1812696..1813430	-	244	15838504	-	XF1906	-	hypothetical protein
1900	 41.30	-1	1813742..1813879	+	45	15838505	-	XF1907	-	hypothetical protein
1901	 47.17	0	1814150..1814467	-	105	15838506	-	XF1908	-	hypothetical protein
1902	 51.96	0	1814457..1815530	-	357	15838507	-	XF1909	-	A/G-specific adenine glycosylase
1903	 50.67	0	1815606..1816799	-	397	15838508	-	XF1910	-	cell division protein
1904	 51.27	0	1817367..1817840	+	157	15838509	-	XF1911	-	hypothetical protein
1905	 51.82	0	1818111..1818716	+	201	77747570	-	XF1912	-	hypothetical protein
1906	 52.04	0	1818848..1819654	-	268	15838511	-	XF1913	-	type V secretory pathway protein
1907	 38.61	-2	1819904..1821400	+	498	15838512	-	XF1914	-	anthranilate synthase component I
1908	 37.64	-2	1821376..1822002	+	208	15838513	-	XF1915	-	anthranilate synthase component II
1909	 37.37	-2	1821986..1823422	+	478	15838514	-	XF1916	-	coenzyme F390 synthetase
1910	 37.19	-2	1823419..1823937	+	172	15838515	-	XF1917	-	hypothetical protein
1911	 37.17	-2	1824062..1824634	+	190	15838516	-	XF1918	-	hypothetical protein
1912	 40.44	-1	1824700..1825290	+	196	15838517	-	XF1919	-	hypothetical protein
1913	 34.41	-2	1825482..1825760	-	92	15838518	-	XF1920	-	Trp operon transcriptional repressor
1914	 50.21	0	1826022..1826750	+	242	15838519	-	XF1921	-	superoxide dismutase [Mn] precursor
1915	 50.41	0	1826795..1826917	-	40	15838520	-	XF1922	-	hypothetical protein
1916	 50.00	0	1827248..1828219	+	323	77747571	-	XF1923	-	quinolinate synthetase
1917	 55.30	0	1828232..1829770	+	512	15838522	-	XF1924	-	L-aspartate oxidase
1918	 50.11	0	1829772..1830641	+	289	15838523	-	XF1925	-	nicotinate-nucleotide pyrophosphorylase
1919	 45.91	-1	1830613..1830771	-	52	15838524	-	XF1926	-	hypothetical protein
1920	 57.55	0	1832918..1833301	+	127	15838525	-	XF1928	-	hypothetical protein
1921	 48.87	0	1835668..1835976	-	102	15838526	-	XF1932	-	hypothetical protein
1922	 53.71	0	1836138..1836932	+	264	15838527	-	XF1933	-	exodeoxyribonuclease III
1923	 57.91	0	1837176..1837769	+	197	15838528	-	XF1934	-	HetI protein
1924	 53.52	0	1837995..1838633	+	212	77747572	gidB	XF1935	-	glucose-inhibited division protein B
1925	 53.32	0	1838683..1840683	-	666	15838530	-	XF1936	-	transketolase
1926	 52.38	0	1840790..1842133	-	447	15838531	-	XF1937	-	proton glutamate symport protein
1927	 44.17	-1	1842293..1842412	+	39	15838532	-	XF1938	-	hypothetical protein
1928	 43.94	-1	1842428..1842559	+	43	15838533	-	XF1939	-	hypothetical protein
1929	 49.62	0	1842787..1843437	-	216	15838534	-	XF1940	-	methionine sulfoxide reductase A
1930	 45.05	-1	1843545..1844039	-	164	15838535	-	XF1941	-	hypothetical protein
1931	 45.83	-1	1844193..1844288	-	31	15838536	-	XF1942	-	hypothetical protein
1932	 47.58	0	1844716..1845108	+	130	15838537	-	XF1943	-	histone-like protein
1933	 48.40	0	1845785..1847935	+	716	15838538	-	XF1944	-	peptidyl-dipeptidase
1934	 40.64	-1	1848018..1848455	-	145	15838539	-	XF1945	-	VirK protein
1935	 52.41	0	1849155..1850480	+	441	15838540	-	XF1946	-	folylpolyglutamate synthase/dihydrofolate synthase
1936	 51.60	0	1850519..1851487	+	322	15838541	-	XF1947	-	hypothetical protein
1937	 46.15	0	1851565..1852266	+	233	15838542	-	XF1948	-	colicin V production protein
1938	 49.38	0	1852338..1853795	+	485	15838543	-	XF1949	-	amidophosphoribosyltransferase
1939	 45.86	-1	1854185..1854655	-	156	15838544	-	XF1950	-	hypothetical protein
1940	 50.26	0	1854677..1855846	-	389	15838545	-	XF1951	-	hypothetical protein
1941	 49.34	0	1855863..1861130	-	1755	15838546	-	XF1952	-	chemotaxis-related protein kinase
1942	 49.95	0	1861127..1863208	-	693	15838547	-	XF1953	-	pilus biogenesis protein
1943	 46.89	0	1863209..1863739	-	176	15838548	-	XF1954	-	pilus biogenesis protein
1944	 42.21	-1	1863756..1864172	-	138	77747573	-	XF1955	-	pilus protein
1945	 53.76	0	1864428..1865372	+	314	15838550	-	XF1956	-	glutathione synthetase
1946	 54.00	0	1865350..1866249	+	299	15838551	-	XF1957	-	TonB protein
1947	 33.95	-2	1866558..1867367	+	269	15838552	-	XF1958	-	hypothetical protein
1948	 50.95	0	1867554..1869722	-	722	15838553	glyS	XF1959	-	glycyl-tRNA synthetase subunit beta
1949	 52.60	0	1869815..1870738	-	307	15838554	glyQ	XF1960	-	glycyl-tRNA synthetase subunit alpha
1950	 56.04	0	1871049..1872686	-	545	15838555	nadE	XF1961	-	NAD synthetase
1951	 48.65	0	1872930..1873040	+	36	15838556	-	XF1962	-	hypothetical protein
1952	 52.14	0	1873134..1873367	-	77	15838557	-	XF1963	-	hypothetical protein
1953	 58.85	+1	1873558..1873941	+	127	15838558	-	XF1964	-	ferredoxin
1954	 56.18	0	1874325..1875230	-	301	15838559	-	XF1965	-	haloalkane dehalogenase
1955	 57.95	0	1875227..1877749	-	840	15838560	-	XF1966	-	hypothetical protein
1956	 54.34	0	1877733..1877951	-	72	15838561	-	XF1967	-	hypothetical protein
1957	 53.40	0	1877948..1879552	-	534	15838562	-	XF1968	-	methyltransferase
1958	 50.31	0	1879618..1879776	+	52	15838563	-	XF1969	-	hypothetical protein
1959	 53.59	0	1880089..1881105	-	338	15838564	-	XF1970	-	3-oxoacyl-(acyl carrier protein) synthase III
1960	 52.24	0	1881257..1881568	-	103	15838565	-	XF1971	-	hypothetical protein
1961	 55.26	0	1881802..1882248	+	148	15838566	-	XF1972	-	tRNA/rRNA methylase
1962	 39.19	-2	1882645..1883037	+	130	15838567	-	XF1973	-	hypothetical protein
1963	 49.56	0	1883067..1883294	-	75	15838568	-	XF1974	-	hypothetical protein
1964	 55.54	0	1883483..1885207	+	574	15838569	purH	XF1975	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1965	 58.45	+1	1885366..1886679	+	437	15838570	-	XF1976	-	phosphoribosylamine--glycine ligase
1966	 46.91	0	1886692..1887192	+	166	15838571	-	XF1977	-	hypothetical protein
1967	 51.78	0	1887189..1889411	+	740	15838572	-	XF1978	-	hypothetical protein
1968	 54.07	0	1889583..1890527	-	314	15838573	-	XF1979	-	transmembrane protein
1969	 45.07	-1	1890629..1891003	+	124	15838574	-	XF1980	-	hypothetical protein
1970	 51.61	0	1891180..1894587	-	1135	77747574	-	XF1981	-	surface protein
1971	 32.78	-2	1895114..1895293	-	59	15838576	-	XF1982	-	hypothetical protein
1972	 51.69	0	1895679..1896299	+	206	15838577	folE	XF1983	-	GTP cyclohydrolase I
1973	 54.61	0	1896964..1897527	+	187	15838578	-	XF1984	-	hypothetical protein
1974	 54.67	0	1898181..1898930	-	249	15838579	-	XF1985	-	tRNA/rRNA methyltransferase
1975	 51.57	0	1899019..1899336	-	105	15838580	-	XF1986	-	hypothetical protein
1976	 56.49	0	1899481..1901898	-	805	77747575	-	XF1987	-	VacB protein
1977	 45.83	-1	1901910..1902029	-	39	15838582	-	XF1988	-	hypothetical protein
1978	 53.90	0	1902087..1903316	-	409	15838583	-	XF1989	-	hypothetical protein
1979	 53.46	0	1903620..1904255	-	211	15838584	-	XF1990	-	thioredoxin
1980	 42.66	-1	1904318..1904671	-	117	15838585	-	XF1991	-	hypothetical protein
1981	 57.06	0	1905284..1906480	+	398	15838586	-	XF1992	-	GTP cyclohydrolase
1982	 54.59	0	1906829..1907863	-	344	15838587	-	XF1993	-	hypothetical protein
1983	 54.57	0	1907860..1908735	-	291	15838588	-	XF1994	-	beta 1,4 glucosyltransferase
1984	 53.77	0	1908774..1910045	-	423	15838589	-	XF1995	-	hypothetical protein
1985	 54.33	0	1910530..1910910	+	126	15838590	-	XF1996	-	PbsX family transcriptional regulator
1986	 53.64	0	1910962..1911621	+	219	15838591	-	XF1997	-	hypothetical protein
1987	 50.55	0	1911707..1911979	+	90	15838592	fis	XF1998	-	DNA-binding protein Fis
1988	 55.10	0	1912154..1913242	-	362	15838593	-	XF1999	-	branched-chain amino acid aminotransferase
1989	 51.27	0	1913316..1913867	-	183	77747576	-	XF2000	-	hypothetical protein
1990	 55.87	0	1913995..1914420	+	141	15838595	-	XF2001	-	hypothetical protein
1991	 48.15	0	1914667..1914828	-	53	15838596	-	XF2002	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.