IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1852	 44.87	-1	1777003..1778181	+	392	15838457	-	XF1859	-	hypothetical protein
1853	 38.44	-2	1778168..1778500	+	110	15838458	-	XF1860	-	hypothetical protein
1854	 35.80	-2	1778507..1778668	+	53	15838459	-	XF1861	-	hypothetical protein
1855	 45.15	-1	1778757..1779086	-	109	15838460	-	XF1862	-	hypothetical protein
1856	 52.70	0	1779077..1779298	-	73	15838461	-	XF1863	-	hypothetical protein
1857	 44.60	-1	1779582..1780016	-	144	15838462	-	XF1864	-	hypothetical protein
1858	 37.29	-2	1780157..1780459	+	100	15838463	-	XF1865	-	hypothetical protein
1859	 43.41	-1	1780818..1780946	+	42	15838464	-	XF1866	-	hypothetical protein
1860	 47.47	0	1781514..1782008	+	164	15838465	-	XF1867	-	hypothetical protein
1861	 43.43	-1	1782089..1782613	+	174	15838466	-	XF1868	-	hypothetical protein
1862	 41.05	-1	1782606..1782890	+	94	15838467	-	XF1869	-	hypothetical protein
1863	 45.00	-1	1782890..1783960	+	356	15838468	-	XF1870	-	hypothetical protein
1864	 39.36	-2	1784137..1784385	-	82	15838469	-	XF1871	-	hypothetical protein
1865	 52.91	0	1784448..1784636	-	62	15838470	-	XF1872	-	hypothetical protein
1866	 47.99	0	1784959..1785306	+	115	15838471	-	XF1873	-	hypothetical protein
1867	 40.38	-1	1785369..1785680	+	103	15838472	-	XF1874	-	hypothetical protein
1868	 45.37	-1	1785857..1786936	-	359	15838473	-	XF1875	-	hypothetical protein
1869	 41.05	-1	1786936..1787220	-	94	15838474	-	XF1876	-	hypothetical protein
1870	 42.04	-1	1787213..1788430	-	405	15838475	-	XF1877	-	hypothetical protein
1871	 42.79	-1	1788499..1788720	-	73	15838476	-	XF1878	-	hypothetical protein
1872	 39.80	-1	1788742..1788942	-	66	15838477	-	XF1879	-	hypothetical protein
1873	 42.48	-1	1788949..1789254	-	101	15838478	-	XF1880	-	hypothetical protein
1874	 49.32	0	1789521..1790108	-	195	15838479	-	XF1881	-	hypothetical protein
1875	 40.44	-1	1790367..1790549	-	60	15838480	-	XF1882	-	hypothetical protein
1876	 29.96	-2	1790553..1790819	-	88	15838481	-	XF1883	-	hypothetical protein
1877	 40.51	-1	1790812..1791201	-	129	15838482	-	XF1884	-	hypothetical protein
1878	 44.19	-1	1791298..1791564	-	88	15838483	-	XF1885	-	hypothetical protein
1879	 50.08	0	1791658..1792302	-	214	15838484	-	XF1886	-	phosphoglycerate mutase
1880	 47.93	0	1792367..1794517	-	716	15838485	-	XF1887	-	hypothetical protein
1881	 51.88	0	1794923..1796728	+	601	77747568	-	XF1888	-	thiamine biosynthesis protein ThiC
1882	 48.97	0	1796860..1797639	+	259	15838487	-	XF1889	-	ferredoxin-NADP reductase
1883	 49.91	0	1797633..1798205	-	190	15838488	-	XF1890	-	glutathione peroxidase-like protein
1884	 41.36	-1	1798531..1800063	+	510	15838489	-	XF1891	-	di-tripeptide ABC transporter membrane protein
1885	 50.97	0	1800225..1800944	-	239	77747569	-	XF1892	-	endonuclease V (deoxyinosine 3'endonuclease)
1886	 46.00	0	1801044..1801793	+	249	15838491	-	XF1893	-	phosphoglyceromutase
1887	 48.83	0	1801892..1802575	-	227	15838492	-	XF1894	-	hypothetical protein
1888	 46.94	0	1802593..1803408	-	271	15838493	-	XF1895	-	hypothetical protein
1889	 46.88	0	1803412..1803972	-	186	15838494	-	XF1896	-	outer membrane protein P6 precursor
1890	 49.57	0	1804014..1805306	-	430	15838495	tolB	XF1897	-	translocation protein TolB
1891	 51.49	0	1805595..1806635	-	346	15838496	-	XF1898	-	TolA protein
1892	 46.21	0	1806625..1807059	-	144	15838497	-	XF1899	-	TolR protein
1893	 51.29	0	1807093..1807866	-	257	15838498	-	XF1900	-	TolQ protein
1894	 51.45	0	1807890..1808336	-	148	15838499	-	XF1901	-	hypothetical protein
1895	 52.42	0	1808333..1809364	-	343	15838500	ruvB	XF1902	-	Holliday junction DNA helicase B
1896	 48.35	0	1809426..1811330	-	634	15838501	-	XF1903	-	potassium uptake protein
1897	 51.11	0	1811385..1811969	-	194	15838502	ruvA	XF1904	-	Holliday junction DNA helicase motor protein
1898	 52.30	0	1812055..1812576	-	173	161378163	ruvC	XF1905	-	Holliday junction resolvase
1899	 48.71	0	1812696..1813430	-	244	15838504	-	XF1906	-	hypothetical protein
1900	 41.30	-1	1813742..1813879	+	45	15838505	-	XF1907	-	hypothetical protein
1901	 47.17	0	1814150..1814467	-	105	15838506	-	XF1908	-	hypothetical protein
1902	 51.96	0	1814457..1815530	-	357	15838507	-	XF1909	-	A/G-specific adenine glycosylase
1903	 50.67	0	1815606..1816799	-	397	15838508	-	XF1910	-	cell division protein
1904	 51.27	0	1817367..1817840	+	157	15838509	-	XF1911	-	hypothetical protein
1905	 51.82	0	1818111..1818716	+	201	77747570	-	XF1912	-	hypothetical protein
1906	 52.04	0	1818848..1819654	-	268	15838511	-	XF1913	-	type V secretory pathway protein
1907	 38.61	-2	1819904..1821400	+	498	15838512	-	XF1914	-	anthranilate synthase component I
1908	 37.64	-2	1821376..1822002	+	208	15838513	-	XF1915	-	anthranilate synthase component II
1909	 37.37	-2	1821986..1823422	+	478	15838514	-	XF1916	-	coenzyme F390 synthetase
1910	 37.19	-2	1823419..1823937	+	172	15838515	-	XF1917	-	hypothetical protein
1911	 37.17	-2	1824062..1824634	+	190	15838516	-	XF1918	-	hypothetical protein
1912	 40.44	-1	1824700..1825290	+	196	15838517	-	XF1919	-	hypothetical protein
1913	 34.41	-2	1825482..1825760	-	92	15838518	-	XF1920	-	Trp operon transcriptional repressor
1914	 50.21	0	1826022..1826750	+	242	15838519	-	XF1921	-	superoxide dismutase [Mn] precursor
1915	 50.41	0	1826795..1826917	-	40	15838520	-	XF1922	-	hypothetical protein
1916	 50.00	0	1827248..1828219	+	323	77747571	-	XF1923	-	quinolinate synthetase
1917	 55.30	0	1828232..1829770	+	512	15838522	-	XF1924	-	L-aspartate oxidase
1918	 50.11	0	1829772..1830641	+	289	15838523	-	XF1925	-	nicotinate-nucleotide pyrophosphorylase
1919	 45.91	-1	1830613..1830771	-	52	15838524	-	XF1926	-	hypothetical protein
1920	 57.55	0	1832918..1833301	+	127	15838525	-	XF1928	-	hypothetical protein
1921	 48.87	0	1835668..1835976	-	102	15838526	-	XF1932	-	hypothetical protein
1922	 53.71	0	1836138..1836932	+	264	15838527	-	XF1933	-	exodeoxyribonuclease III
1923	 57.91	0	1837176..1837769	+	197	15838528	-	XF1934	-	HetI protein
1924	 53.52	0	1837995..1838633	+	212	77747572	gidB	XF1935	-	glucose-inhibited division protein B
1925	 53.32	0	1838683..1840683	-	666	15838530	-	XF1936	-	transketolase
1926	 52.38	0	1840790..1842133	-	447	15838531	-	XF1937	-	proton glutamate symport protein
1927	 44.17	-1	1842293..1842412	+	39	15838532	-	XF1938	-	hypothetical protein
1928	 43.94	-1	1842428..1842559	+	43	15838533	-	XF1939	-	hypothetical protein
1929	 49.62	0	1842787..1843437	-	216	15838534	-	XF1940	-	methionine sulfoxide reductase A
1930	 45.05	-1	1843545..1844039	-	164	15838535	-	XF1941	-	hypothetical protein
1931	 45.83	-1	1844193..1844288	-	31	15838536	-	XF1942	-	hypothetical protein
1932	 47.58	0	1844716..1845108	+	130	15838537	-	XF1943	-	histone-like protein
1933	 48.40	0	1845785..1847935	+	716	15838538	-	XF1944	-	peptidyl-dipeptidase
1934	 40.64	-1	1848018..1848455	-	145	15838539	-	XF1945	-	VirK protein
1935	 52.41	0	1849155..1850480	+	441	15838540	-	XF1946	-	folylpolyglutamate synthase/dihydrofolate synthase
1936	 51.60	0	1850519..1851487	+	322	15838541	-	XF1947	-	hypothetical protein
1937	 46.15	0	1851565..1852266	+	233	15838542	-	XF1948	-	colicin V production protein
1938	 49.38	0	1852338..1853795	+	485	15838543	-	XF1949	-	amidophosphoribosyltransferase
1939	 45.86	-1	1854185..1854655	-	156	15838544	-	XF1950	-	hypothetical protein
1940	 50.26	0	1854677..1855846	-	389	15838545	-	XF1951	-	hypothetical protein
1941	 49.34	0	1855863..1861130	-	1755	15838546	-	XF1952	-	chemotaxis-related protein kinase
1942	 49.95	0	1861127..1863208	-	693	15838547	-	XF1953	-	pilus biogenesis protein
1943	 46.89	0	1863209..1863739	-	176	15838548	-	XF1954	-	pilus biogenesis protein
1944	 42.21	-1	1863756..1864172	-	138	77747573	-	XF1955	-	pilus protein
1945	 53.76	0	1864428..1865372	+	314	15838550	-	XF1956	-	glutathione synthetase
1946	 54.00	0	1865350..1866249	+	299	15838551	-	XF1957	-	TonB protein
1947	 33.95	-2	1866558..1867367	+	269	15838552	-	XF1958	-	hypothetical protein
1948	 50.95	0	1867554..1869722	-	722	15838553	glyS	XF1959	-	glycyl-tRNA synthetase subunit beta
1949	 52.60	0	1869815..1870738	-	307	15838554	glyQ	XF1960	-	glycyl-tRNA synthetase subunit alpha
1950	 56.04	0	1871049..1872686	-	545	15838555	nadE	XF1961	-	NAD synthetase
1951	 48.65	0	1872930..1873040	+	36	15838556	-	XF1962	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.