IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1739	 69.70	+2	1662185..1663240	-	351	15838344	-	XF1743	-	esterase
1740	 65.05	+2	1663245..1663988	-	247	15838345	-	XF1744	-	oxidoreductase
1741	 61.46	+1	1664020..1665036	-	338	15838346	-	XF1745	-	hypothetical protein
1742	 67.62	+2	1665101..1666150	-	349	15838347	-	XF1746	-	alcohol dehydrogenase
1743	 67.13	+2	1666171..1666812	-	213	15838348	-	XF1747	-	hypothetical protein
1744	 65.41	+2	1666809..1667522	-	237	15838349	-	XF1748	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
1745	 68.46	+2	1667542..1668771	-	409	15838350	-	XF1749	-	transcriptional regulator
1746	 66.48	+2	1668885..1669928	-	347	77747561	-	XF1750	-	hypothetical protein
1747	 68.85	+2	1670047..1670550	-	167	15838352	-	XF1751	-	hypothetical protein
1748	 65.33	+2	1670660..1671634	+	324	15838353	-	XF1752	-	LysR family transcriptional regulator
1749	 67.59	+2	1671676..1673526	-	616	15838354	-	XF1753	-	hypothetical protein
1750	 66.35	+2	1673842..1674468	+	208	15838355	-	XF1754	-	hypothetical protein
1751	 65.08	+2	1674481..1675110	+	209	15838356	-	XF1755	-	hypothetical protein
1752	 67.12	+2	1675195..1675413	+	72	15838357	-	XF1756	-	hypothetical protein
1753	 58.62	+1	1675818..1676078	-	86	15838358	-	XF1757	-	hypothetical protein
1754	 65.44	+2	1676095..1676502	-	135	15838359	-	XF1758	-	hypothetical protein
1755	 63.58	+1	1676603..1676926	-	107	15838360	-	XF1759	-	hypothetical protein
1756	 65.61	+2	1677021..1677683	-	220	15838361	-	XF1760	-	hypothetical protein
1757	 66.11	+2	1677741..1678643	-	300	77747562	-	XF1761	-	hypothetical protein
1758	 71.18	+2	1678907..1679416	-	169	77747563	-	XF1762	-	hypothetical protein
1759	 67.38	+2	1679422..1680264	-	280	15838364	-	XF1763	-	hypothetical protein
1760	 65.54	+2	1680412..1680765	-	117	15838365	-	XF1764	-	hypothetical protein
1761	 72.30	+2	1681958..1683376	-	472	15838366	-	XF1765	-	drug:proton antiporter
1762	 70.37	+2	1683408..1684190	-	260	15838367	-	XF1766	-	hypothetical protein
1763	 67.60	+2	1684178..1685248	+	356	15838368	-	XF1767	-	hypothetical protein
1764	 67.41	+2	1685230..1686171	+	313	15838369	-	XF1768	-	LysR family transcriptional regulator
1765	 64.33	+1	1686247..1687188	+	313	15838370	-	XF1769	-	hypothetical protein
1766	 61.62	+1	1687397..1688287	+	296	15838371	-	XF1770	-	hypothetical protein
1767	 61.83	+1	1688250..1688642	-	130	15838372	-	XF1771	-	hypothetical protein
1768	 64.23	+1	1688664..1689074	-	136	15838373	-	XF1772	-	hypothetical protein
1769	 65.09	+2	1689210..1689968	-	252	15838374	-	XF1773	-	hypothetical protein
1770	 60.44	+1	1690011..1694029	-	537	15838375	-	XF1774	-	DNA methyltransferase
1771	 66.77	+2	1694565..1696424	-	619	15838376	-	XF1776	-	DNA topoisomerase I
1772	 65.50	+2	1696611..1696781	+	56	15838377	-	XF1777	-	hypothetical protein
1773	 67.33	+2	1696852..1697304	-	150	15838378	-	XF1778	-	single-strand DNA-binding protein
1774	 63.67	+1	1697378..1697911	-	177	15838379	-	XF1779	-	hypothetical protein
1775	 67.87	+2	1697908..1698657	-	249	15838380	-	XF1780	-	hypothetical protein
1776	 66.11	+2	1698842..1700098	-	418	15838381	-	XF1781	-	hypothetical protein
1777	 63.99	+1	1700095..1700655	-	186	15838382	-	XF1782	-	hypothetical protein
1778	 68.54	+2	1700671..1701579	-	302	15838383	-	XF1783	-	hypothetical protein
1779	 65.88	+2	1701566..1702327	-	253	15838384	-	XF1784	-	hypothetical protein
1780	 67.81	+2	1702552..1703427	-	291	15838385	-	XF1785	-	chromosome partitioning related protein
1781	 61.71	+1	1703470..1703691	-	73	15838386	-	XF1786	-	hypothetical protein
1782	 62.96	+1	1703801..1704556	-	251	15838387	-	XF1787	-	hypothetical protein
1783	 59.92	+1	1704782..1705285	-	167	15838388	-	XF1788	-	hypothetical protein
1784	 49.69	0	1705455..1705613	-	52	15838389	-	XF1789	-	hypothetical protein
1785	 50.00	0	1705668..1705781	+	37	15838390	-	XF1790	-	hypothetical protein
1786	 51.89	0	1706002..1706265	+	87	15838391	-	XF1791	-	fimbrillin
1787	 55.44	0	1706262..1706546	+	94	15838392	-	XF1792	-	hypothetical protein
1788	 55.02	0	1706753..1707061	-	102	15838393	-	XF1793	-	hypothetical protein
1789	 49.12	0	1707749..1708375	-	208	15838394	-	XF1794	-	hypothetical protein
1790	 51.58	0	1708386..1709114	-	242	15838395	-	XF1795	-	pantothenate kinase
1791	 51.05	0	1709111..1710064	-	317	15838396	-	XF1796	-	biotin--protein ligase
1792	 50.00	0	1710469..1711638	-	389	15838397	-	XF1797	-	porphyrin biosynthesis protein
1793	 53.39	0	1711635..1712666	-	343	15838398	-	XF1798	-	hypothetical protein
1794	 52.51	0	1712663..1713580	-	305	15838399	-	XF1799	-	uroporphyrinogen-III synthase
1795	 47.53	0	1713970..1714455	+	161	15838400	-	XF1800	-	hypothetical protein
1796	 46.44	0	1714573..1715091	+	172	161378164	-	XF1801	-	preprotein translocase subunit SecB
1797	 51.68	0	1715112..1716152	+	346	15838402	gpsA	XF1802	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
1798	 48.17	0	1716290..1716862	-	190	15838403	-	XF1803	-	hypothetical protein
1799	 49.09	0	1717816..1718697	+	293	15838404	-	XF1804	-	site-specific DNA-methyltransferase
1800	 40.94	-1	1719045..1719215	+	56	15838405	-	XF1805	-	hypothetical protein
1801	 52.16	0	1720467..1722293	+	608	15838406	-	XF1807	-	DNA polymerase III subunits gamma and tau
1802	 49.07	0	1722297..1722620	+	107	15838407	-	XF1808	-	hypothetical protein
1803	 54.29	0	1722675..1723409	+	244	15838408	recR	XF1809	-	recombination protein RecR
1804	 50.43	0	1723471..1723815	+	114	15838409	-	XF1810	-	hypothetical protein
1805	 53.62	0	1723883..1724365	-	160	15838410	-	XF1811	-	outer membrane protein Slp precursor
1806	 55.35	0	1727304..1728257	-	317	15838411	-	XF1813	-	methanol dehydrogenase regulatory protein
1807	 53.25	0	1728267..1730114	+	615	15838412	-	XF1814	-	hypothetical protein
1808	 51.25	0	1730157..1730714	+	185	15838413	-	XF1815	-	hypothetical protein
1809	 49.23	0	1730829..1731023	+	64	15838414	rpmF	XF1816	-	50S ribosomal protein L32
1810	 51.18	0	1731118..1732092	+	324	15838415	-	XF1817	-	3-oxoacyl-(acyl carrier protein) synthase III
1811	 53.33	0	1732585..1734144	-	519	15838416	-	XF1818	-	2-isopropylmalate synthase
1812	 55.38	0	1734199..1735341	-	380	15838417	-	XF1819	-	threonine dehydratase
1813	 55.28	0	1735369..1735614	-	81	15838418	-	XF1820	-	hypothetical protein
1814	 54.79	0	1735598..1737349	-	583	15838419	-	XF1821	-	acetolactate synthase 2 catalytic subunit
1815	 50.34	0	1737396..1738412	-	338	77747564	-	XF1822	-	ketol-acid reductoisomerase
1816	 49.45	0	1739055..1741238	-	727	15838421	-	XF1823	-	tail-specific protease
1817	 39.51	-2	1741403..1741564	-	53	15838422	-	XF1824	-	hypothetical protein
1818	 53.75	0	1741620..1742618	-	332	15838423	-	XF1825	-	NAD(P)H steroid dehydrogenase
1819	 51.96	0	1742668..1742871	+	67	15838424	-	XF1826	-	hypothetical protein
1820	 49.54	0	1742868..1743299	-	143	15838425	-	XF1827	-	organic hydroperoxide resistance protein
1821	 48.60	0	1743487..1744704	-	405	15838426	-	XF1828	-	ATPase
1822	 50.67	0	1744701..1745369	-	222	15838427	-	XF1829	-	hypothetical protein
1823	 53.80	0	1745528..1746856	-	442	15838428	-	XF1830	-	nitrile hydratase activator
1824	 49.88	0	1747175..1748026	-	283	15838429	purU	XF1831	-	formyltetrahydrofolate deformylase
1825	 52.93	0	1748175..1748822	+	215	15838430	-	XF1832	-	hypothetical protein
1826	 52.08	0	1748819..1750477	+	552	15838431	ubiB	XF1833	-	putative ubiquinone biosynthesis protein UbiB
1827	 49.46	0	1750667..1751131	-	154	15838432	-	XF1834	-	disulphide isomerase
1828	 50.41	0	1751330..1752535	-	401	77747565	-	XF1835	-	trans-2-enoyl-CoA reductase
1829	 51.17	0	1752957..1753511	-	184	15838434	-	XF1836	-	hypothetical protein
1830	 53.52	0	1753508..1754359	-	283	15838435	-	XF1837	-	hypothetical protein
1831	 56.88	0	1754397..1755326	-	309	15838436	-	XF1838	-	hypothetical protein
1832	 51.63	0	1755510..1755755	-	81	15838437	-	XF1839	-	hypothetical protein
1833	 50.28	0	1755823..1756536	+	237	15838438	-	XF1840	-	hypothetical protein
1834	 49.75	0	1756687..1757472	-	261	77747566	uppP	XF1841	-	undecaprenyl pyrophosphate phosphatase
1835	 49.50	0	1757590..1759104	+	504	15838440	-	XF1842	-	glutamine synthetase
1836	 45.13	-1	1759358..1759696	+	112	15838441	-	XF1843	-	nitrogen regulatory protein P-II
1837	 49.56	0	1759686..1761164	+	492	15838442	-	XF1844	-	ammonium transporter
1838	 49.38	0	1761182..1761667	-	161	15838443	-	XF1845	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.