IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1690	 51.85	0	1620400..1620588	+	62	15838295	-	XF1694	-	hypothetical protein
1691	 49.71	0	1620593..1620763	-	56	15838296	-	XF1695	-	hypothetical protein
1692	 50.17	0	1621075..1621371	-	98	15838297	-	XF1696	-	hypothetical protein
1693	 61.74	+1	1621413..1622183	+	256	15838298	-	XF1697	-	hypothetical protein
1694	 59.12	+1	1622183..1622500	+	105	15838299	-	XF1698	-	hypothetical protein
1695	 58.12	0	1622497..1623327	+	276	15838300	-	XF1699	-	hypothetical protein
1696	 60.28	+1	1623324..1623965	+	213	15838301	-	XF1700	-	hypothetical protein
1697	 64.97	+2	1623962..1624315	+	117	15838302	-	XF1701	-	hypothetical protein
1698	 46.41	0	1624326..1624631	-	101	15838303	-	XF1702	-	hypothetical protein
1699	 51.78	0	1624628..1624936	-	102	15838304	-	XF1703	-	hypothetical protein
1700	 58.08	0	1625011..1626174	+	387	15838305	-	XF1704	-	hypothetical protein
1701	 57.93	0	1626171..1626731	+	186	15838306	-	XF1705	-	hypothetical protein
1702	 56.53	0	1626735..1627898	+	387	15838307	-	XF1706	-	phage-related tail fiber protein
1703	 50.42	0	1627931..1628410	-	159	15838308	-	XF1707	-	hypothetical protein
1704	 51.70	0	1628444..1629559	-	371	15838309	-	XF1708	-	hypothetical protein
1705	 45.70	-1	1629575..1629865	-	96	15838310	-	XF1709	-	hypothetical protein
1706	 54.05	0	1630176..1630508	+	110	15838311	-	XF1710	-	hypothetical protein
1707	 53.11	0	1630703..1631056	+	117	15838312	-	XF1711	-	hypothetical protein
1708	 49.11	0	1631811..1632761	-	316	15838313	-	XF1712	-	hypothetical protein
1709	 46.43	0	1632834..1633169	-	111	15838314	-	XF1713	-	hypothetical protein
1710	 50.46	0	1633153..1633695	-	180	15838315	-	XF1714	-	hypothetical protein
1711	 49.76	0	1633684..1634505	+	273	15838316	mtgA	XF1715	-	monofunctional biosynthetic peptidoglycan transglycosylase
1712	 54.61	0	1634849..1637560	+	903	15838317	-	XF1716	-	DNA mismatch repair protein
1713	 52.18	0	1637597..1638397	-	266	15838318	-	XF1717	-	hypothetical protein
1714	 65.34	+2	1638946..1640907	+	653	15838319	-	XF1718	-	phage-related integrase
1715	 62.16	+1	1640956..1641621	-	221	15838320	-	XF1719	-	hypothetical protein
1716	 54.40	0	1641630..1642004	+	124	15838321	-	XF1720	-	hypothetical protein
1717	 63.36	+1	1642019..1642411	-	130	15838322	-	XF1721	-	hypothetical protein
1718	 61.07	+1	1642422..1642814	-	130	15838323	-	XF1722	-	hypothetical protein
1719	 65.47	+2	1642983..1644065	-	360	77747559	-	XF1723	-	sugar-phosphate dehydrogenase
1720	 63.13	+1	1644305..1645294	-	329	15838325	-	XF1724	-	sugar-phosphate dehydrogenase
1721	 67.47	+2	1645362..1645610	-	82	15838326	-	XF1725	-	hypothetical protein
1722	 68.10	+2	1645626..1646393	-	255	15838327	-	XF1726	-	2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase
1723	 64.88	+2	1646577..1647638	-	353	15838328	-	XF1727	-	NADP-alcohol dehydrogenase
1724	 69.58	+2	1647681..1648880	-	399	77747560	-	XF1728	-	transport protein
1725	 67.01	+2	1649021..1649896	-	291	15838330	-	XF1729	-	phenylacetaldehyde dehydrogenase
1726	 70.93	+2	1650033..1650923	-	296	15838331	-	XF1730	-	LysR family transcriptional regulator
1727	 48.33	0	1650909..1651088	+	59	15838332	-	XF1731	-	hypothetical protein
1728	 65.85	+2	1651143..1652249	+	368	15838333	-	XF1732	-	NAD(P)H-dependent 2-cyclohexen-1-one reductase
1729	 66.67	+2	1652388..1652966	+	192	15838334	-	XF1733	-	tryptophan repressor binding protein
1730	 68.39	+2	1652981..1654027	+	348	15838335	-	XF1734	-	NADP-alcohol dehydrogenase
1731	 70.39	+2	1654062..1655135	+	357	15838336	-	XF1735	-	hypothetical protein
1732	 64.90	+2	1655213..1655608	+	131	15838337	-	XF1736	-	hypothetical protein
1733	 71.33	+2	1655625..1656353	-	242	15838338	-	XF1737	-	hypothetical protein
1734	 68.93	+2	1656364..1657689	-	441	15838339	-	XF1738	-	hypothetical protein
1735	 68.74	+2	1657690..1658847	-	385	15838340	-	XF1739	-	outer membrane protein
1736	 70.69	+2	1658850..1660067	-	405	15838341	-	XF1740	-	glucose dehydrogenase B
1737	 70.73	+2	1660130..1661014	-	294	15838342	-	XF1741	-	daunorubicin C-13 ketoreductase
1738	 68.81	+2	1661083..1662153	-	356	15838343	-	XF1742	-	hypothetical protein
1739	 69.70	+2	1662185..1663240	-	351	15838344	-	XF1743	-	esterase
1740	 65.05	+2	1663245..1663988	-	247	15838345	-	XF1744	-	oxidoreductase
1741	 61.46	+1	1664020..1665036	-	338	15838346	-	XF1745	-	hypothetical protein
1742	 67.62	+2	1665101..1666150	-	349	15838347	-	XF1746	-	alcohol dehydrogenase
1743	 67.13	+2	1666171..1666812	-	213	15838348	-	XF1747	-	hypothetical protein
1744	 65.41	+2	1666809..1667522	-	237	15838349	-	XF1748	-	5-amino-6-(5-phosphoribosylamino)uracil reductase
1745	 68.46	+2	1667542..1668771	-	409	15838350	-	XF1749	-	transcriptional regulator
1746	 66.48	+2	1668885..1669928	-	347	77747561	-	XF1750	-	hypothetical protein
1747	 68.85	+2	1670047..1670550	-	167	15838352	-	XF1751	-	hypothetical protein
1748	 65.33	+2	1670660..1671634	+	324	15838353	-	XF1752	-	LysR family transcriptional regulator
1749	 67.59	+2	1671676..1673526	-	616	15838354	-	XF1753	-	hypothetical protein
1750	 66.35	+2	1673842..1674468	+	208	15838355	-	XF1754	-	hypothetical protein
1751	 65.08	+2	1674481..1675110	+	209	15838356	-	XF1755	-	hypothetical protein
1752	 67.12	+2	1675195..1675413	+	72	15838357	-	XF1756	-	hypothetical protein
1753	 58.62	+1	1675818..1676078	-	86	15838358	-	XF1757	-	hypothetical protein
1754	 65.44	+2	1676095..1676502	-	135	15838359	-	XF1758	-	hypothetical protein
1755	 63.58	+1	1676603..1676926	-	107	15838360	-	XF1759	-	hypothetical protein
1756	 65.61	+2	1677021..1677683	-	220	15838361	-	XF1760	-	hypothetical protein
1757	 66.11	+2	1677741..1678643	-	300	77747562	-	XF1761	-	hypothetical protein
1758	 71.18	+2	1678907..1679416	-	169	77747563	-	XF1762	-	hypothetical protein
1759	 67.38	+2	1679422..1680264	-	280	15838364	-	XF1763	-	hypothetical protein
1760	 65.54	+2	1680412..1680765	-	117	15838365	-	XF1764	-	hypothetical protein
1761	 72.30	+2	1681958..1683376	-	472	15838366	-	XF1765	-	drug:proton antiporter
1762	 70.37	+2	1683408..1684190	-	260	15838367	-	XF1766	-	hypothetical protein
1763	 67.60	+2	1684178..1685248	+	356	15838368	-	XF1767	-	hypothetical protein
1764	 67.41	+2	1685230..1686171	+	313	15838369	-	XF1768	-	LysR family transcriptional regulator
1765	 64.33	+1	1686247..1687188	+	313	15838370	-	XF1769	-	hypothetical protein
1766	 61.62	+1	1687397..1688287	+	296	15838371	-	XF1770	-	hypothetical protein
1767	 61.83	+1	1688250..1688642	-	130	15838372	-	XF1771	-	hypothetical protein
1768	 64.23	+1	1688664..1689074	-	136	15838373	-	XF1772	-	hypothetical protein
1769	 65.09	+2	1689210..1689968	-	252	15838374	-	XF1773	-	hypothetical protein
1770	 60.44	+1	1690011..1694029	-	537	15838375	-	XF1774	-	DNA methyltransferase
1771	 66.77	+2	1694565..1696424	-	619	15838376	-	XF1776	-	DNA topoisomerase I
1772	 65.50	+2	1696611..1696781	+	56	15838377	-	XF1777	-	hypothetical protein
1773	 67.33	+2	1696852..1697304	-	150	15838378	-	XF1778	-	single-strand DNA-binding protein
1774	 63.67	+1	1697378..1697911	-	177	15838379	-	XF1779	-	hypothetical protein
1775	 67.87	+2	1697908..1698657	-	249	15838380	-	XF1780	-	hypothetical protein
1776	 66.11	+2	1698842..1700098	-	418	15838381	-	XF1781	-	hypothetical protein
1777	 63.99	+1	1700095..1700655	-	186	15838382	-	XF1782	-	hypothetical protein
1778	 68.54	+2	1700671..1701579	-	302	15838383	-	XF1783	-	hypothetical protein
1779	 65.88	+2	1701566..1702327	-	253	15838384	-	XF1784	-	hypothetical protein
1780	 67.81	+2	1702552..1703427	-	291	15838385	-	XF1785	-	chromosome partitioning related protein
1781	 61.71	+1	1703470..1703691	-	73	15838386	-	XF1786	-	hypothetical protein
1782	 62.96	+1	1703801..1704556	-	251	15838387	-	XF1787	-	hypothetical protein
1783	 59.92	+1	1704782..1705285	-	167	15838388	-	XF1788	-	hypothetical protein
1784	 49.69	0	1705455..1705613	-	52	15838389	-	XF1789	-	hypothetical protein
1785	 50.00	0	1705668..1705781	+	37	15838390	-	XF1790	-	hypothetical protein
1786	 51.89	0	1706002..1706265	+	87	15838391	-	XF1791	-	fimbrillin
1787	 55.44	0	1706262..1706546	+	94	15838392	-	XF1792	-	hypothetical protein
1788	 55.02	0	1706753..1707061	-	102	15838393	-	XF1793	-	hypothetical protein
1789	 49.12	0	1707749..1708375	-	208	15838394	-	XF1794	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.