IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1579	 58.05	0	1531095..1532591	+	498	15838184	-	XF1583	-	hypothetical protein
1580	 57.53	0	1532601..1533038	+	145	15838185	-	XF1584	-	hypothetical protein
1581	 60.05	+1	1533035..1533457	+	140	15838186	-	XF1585	-	hypothetical protein
1582	 59.39	+1	1533484..1533648	+	54	15838187	-	XF1586	-	hypothetical protein
1583	 63.02	+1	1533605..1535494	+	629	77747555	-	XF1587	-	hypothetical protein
1584	 48.48	0	1535977..1536306	-	109	15838189	-	XF1588	-	hypothetical protein
1585	 51.75	0	1536445..1536873	-	142	15838190	-	XF1589	-	plasmid stabilization protein
1586	 50.96	0	1536874..1537134	-	86	15838191	-	XF1590	-	plasmid stabilization protein
1587	 61.61	+1	1537240..1538010	+	256	15838192	-	XF1591	-	hypothetical protein
1588	 59.12	+1	1538010..1538327	+	105	15838193	-	XF1592	-	hypothetical protein
1589	 58.60	+1	1538324..1539154	+	276	15838194	-	XF1593	-	hypothetical protein
1590	 58.41	+1	1539151..1539792	+	213	15838195	-	XF1594	-	hypothetical protein
1591	 64.41	+1	1539789..1540142	+	117	15838196	-	XF1595	-	hypothetical protein
1592	 62.00	+1	1540198..1540497	-	99	15838197	-	XF1596	-	hypothetical protein
1593	 58.59	+1	1540494..1540790	-	98	15838198	-	XF1597	-	hypothetical protein
1594	 53.01	0	1540893..1541075	+	60	15838199	-	XF1598	-	hypothetical protein
1595	 51.95	0	1541057..1541287	+	76	15838200	-	XF1599	-	hypothetical protein
1596	 52.15	0	1541391..1541948	-	185	15838201	-	XF1600	-	hypothetical protein
1597	 51.02	0	1542079..1543056	-	325	15838202	-	XF1601	-	hypothetical protein
1598	 52.93	0	1543053..1543904	-	283	15838203	-	XF1602	-	ABC transporter ATP-binding protein
1599	 54.32	0	1544147..1544308	+	53	15838204	-	XF1603	-	hypothetical protein
1600	 51.11	0	1544674..1545258	+	194	15838205	-	XF1604	-	ABC transporter vitamin B12 uptake permease
1601	 52.48	0	1545976..1546863	+	295	15838206	-	XF1605	-	peptidyl-prolyl cis-trans isomerase
1602	 50.11	0	1546888..1548240	+	450	15838207	-	XF1606	-	UDP-glucose dehydrogenase
1603	 49.37	0	1548233..1548469	+	78	15838208	-	XF1607	-	hypothetical protein
1604	 52.52	0	1548515..1549150	+	211	15838209	-	XF1608	-	hypothetical protein
1605	 47.78	0	1550004..1551284	+	426	15838210	-	XF1609	-	glucose/galactose transporter
1606	 51.52	0	1551281..1552297	+	338	15838211	-	XF1610	-	fructokinase
1607	 52.49	0	1552294..1553499	+	401	15838212	-	XF1611	-	hypothetical protein
1608	 33.33	-2	1553568..1553720	-	50	15838213	-	XF1612	-	hypothetical protein
1609	 37.22	-2	1553692..1553871	+	59	15838214	-	XF1613	-	hypothetical protein
1610	 44.71	-1	1553877..1555361	-	494	15838215	-	XF1614	-	penicillin binding protein
1611	 50.00	0	1556082..1556207	-	41	15838216	-	XF1615	-	hypothetical protein
1612	 56.67	0	1556201..1556320	-	39	15838217	-	XF1616	-	hypothetical protein
1613	 56.56	0	1556498..1557427	-	309	15838218	-	XF1617	-	hypothetical protein
1614	 43.33	-1	1557573..1557782	-	69	15838219	-	XF1618	-	hypothetical protein
1615	 44.23	-1	1557944..1558099	+	51	15838220	-	XF1619	-	hypothetical protein
1616	 54.77	0	1558579..1559469	+	296	15838221	-	XF1620	-	hypothetical protein
1617	 53.14	0	1559596..1560963	-	455	15838222	-	XF1621	-	beta-lactamase
1618	 50.60	0	1561665..1561832	-	55	15838223	-	XF1622	-	hypothetical protein
1619	 52.70	0	1562455..1564359	+	634	77747556	-	XF1623	-	glucosyltransferase MdoH
1620	 53.48	0	1564388..1565062	+	224	15838225	-	XF1624	-	carboxylesterase
1621	 51.59	0	1565076..1566116	+	346	15838226	-	XF1625	-	two-component system, sensor protein
1622	 50.46	0	1566142..1566900	+	252	15838227	-	XF1626	-	two-component system, regulatory protein
1623	 56.21	0	1566917..1567834	+	305	15838228	hemC	XF1627	-	porphobilinogen deaminase
1624	 50.35	0	1567888..1568739	-	283	15838229	-	XF1628	-	hypothetical protein
1625	 47.66	0	1568994..1569356	-	120	15838230	-	XF1629	-	hypothetical protein
1626	 50.10	0	1569505..1570554	+	349	15838231	-	XF1630	-	hypothetical protein
1627	 45.75	-1	1570833..1570985	+	50	15838232	-	XF1631	-	hypothetical protein
1628	 46.77	0	1571071..1572201	-	376	15838233	-	XF1632	-	twitching motility protein
1629	 49.95	0	1572367..1573401	-	344	15838234	-	XF1633	-	twitching motility protein
1630	 41.92	-1	1573470..1573667	-	65	15838235	-	XF1634	-	hypothetical protein
1631	 45.74	-1	1573767..1573895	-	42	15838236	-	XF1635	-	hypothetical protein
1632	 49.64	0	1573991..1574266	-	91	15838237	-	XF1636	-	hypothetical protein
1633	 54.35	0	1574607..1575491	+	294	15838238	-	XF1637	-	glycosyl transferase
1634	 52.61	0	1576155..1576979	-	274	15838239	-	XF1638	-	dolichyl-phosphate mannose synthase related protein
1635	 55.83	0	1577752..1578951	-	399	15838240	-	XF1639	-	3-oxoacyl-(acyl carrier protein) synthase I
1636	 56.37	0	1579527..1582703	+	1058	15838241	-	XF1640	-	ankyrin-like protein
1637	 52.04	0	1583028..1585619	-	863	15838242	-	XF1641	-	hypothetical protein
1638	 53.24	0	1585980..1586999	-	339	15838243	-	XF1642	-	phage-related integrase
1639	 55.81	0	1586989..1587246	-	85	15838244	-	XF1643	-	hypothetical protein
1640	 54.17	0	1587265..1587720	-	151	15838245	-	XF1644	-	single-strand DNA-binding protein
1641	 54.98	0	1587790..1588422	-	210	77747557	-	XF1645	-	hypothetical protein
1642	 47.94	0	1588734..1589534	-	266	15838247	-	XF1646	-	UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase
1643	 57.36	0	1589531..1591174	-	547	15838248	-	XF1647	-	hypothetical protein
1644	 53.94	0	1591171..1592097	-	308	15838249	-	XF1648	-	hypothetical protein
1645	 47.08	0	1592113..1592934	-	273	15838250	-	XF1649	-	hypothetical protein
1646	 46.93	0	1592955..1593329	-	124	15838251	-	XF1650	-	hypothetical protein
1647	 56.25	0	1593350..1593541	-	63	15838252	-	XF1651	-	hypothetical protein
1648	 58.33	0	1593565..1593756	-	63	15838253	-	XF1652	-	hypothetical protein
1649	 51.24	0	1593753..1594154	-	133	15838254	-	XF1653	-	hypothetical protein
1650	 52.07	0	1594154..1594612	-	152	15838255	-	XF1654	-	hypothetical protein
1651	 53.33	0	1594609..1595238	-	209	15838256	-	XF1655	-	hypothetical protein
1652	 57.67	0	1595546..1595734	+	62	15838257	-	XF1656	-	hypothetical protein
1653	 48.69	0	1595731..1596342	+	203	15838258	-	XF1657	-	cell filamentation protein
1654	 44.11	-1	1596393..1597088	-	231	15838259	-	XF1658	-	phage-related repressor protein
1655	 50.10	0	1597134..1598099	-	321	15838260	-	XF1659	-	hypothetical protein
1656	 52.94	0	1598115..1598267	+	50	15838261	-	XF1660	-	hypothetical protein
1657	 44.18	-1	1598264..1598512	+	82	15838262	-	XF1661	-	hypothetical protein
1658	 46.60	0	1598569..1598892	+	107	15838263	-	XF1662	-	hypothetical protein
1659	 54.19	0	1599063..1600208	+	381	15838264	-	XF1663	-	hypothetical protein
1660	 44.04	-1	1600187..1600513	+	108	15838265	-	XF1664	-	hypothetical protein
1661	 49.77	0	1600510..1601598	+	362	15838266	-	XF1665	-	hypothetical protein
1662	 58.45	+1	1602265..1602678	+	137	15838267	-	XF1666	-	hypothetical protein
1663	 65.96	+2	1603100..1603381	-	93	15838268	-	XF1667	-	hypothetical protein
1664	 44.08	-1	1603673..1604035	+	120	15838269	-	XF1668	-	HicB-related protein
1665	 54.41	0	1604183..1604794	+	203	15838270	-	XF1669	-	phage-related lysozyme
1666	 56.06	0	1604787..1605116	+	109	15838271	-	XF1670	-	hypothetical protein
1667	 59.31	+1	1605106..1605567	+	153	15838272	-	XF1671	-	hypothetical protein
1668	 64.10	+1	1605548..1605781	+	77	15838273	-	XF1672	-	hypothetical protein
1669	 55.89	0	1605872..1606270	+	132	15838274	-	XF1673	-	hypothetical protein
1670	 55.73	0	1606254..1607204	+	316	15838275	-	XF1674	-	hypothetical protein
1671	 56.70	0	1607220..1607771	+	183	15838276	-	XF1675	-	hypothetical protein
1672	 58.40	0	1607753..1609156	+	467	15838277	-	XF1676	-	hypothetical protein
1673	 55.67	0	1609205..1609486	-	93	15838278	-	XF1677	-	hypothetical protein
1674	 53.39	0	1609483..1609821	-	112	15838279	-	XF1678	-	hypothetical protein
1675	 62.41	+1	1609894..1610739	+	281	15838280	-	XF1679	-	plasmid-related protein
1676	 63.40	+1	1610736..1611929	+	397	15838281	-	XF1680	-	hypothetical protein
1677	 60.25	+1	1611957..1612439	+	160	15838282	-	XF1681	-	hypothetical protein
1678	 57.52	0	1612449..1613432	+	327	15838283	-	XF1682	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.