IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1516	 54.04	0	1473198..1473704	+	168	15838121	-	XF1520	-	general secretory pathway protein H precursor
1517	 56.14	0	1473701..1474099	+	132	15838122	-	XF1521	-	general secretory pathway protein I precursor
1518	 54.39	0	1474096..1474722	+	208	15838123	-	XF1522	-	general secretion pathway protein J
1519	 56.50	0	1474722..1475567	+	281	15838124	-	XF1523	-	general secretory pathway protein K
1520	 54.81	0	1475540..1476694	+	384	15838125	-	XF1524	-	general secretory pathway protein L
1521	 52.45	0	1476675..1477307	+	210	15838126	-	XF1525	-	hypothetical protein
1522	 52.08	0	1477297..1478064	+	255	15838127	-	XF1526	-	hypothetical protein
1523	 53.01	0	1478109..1480436	+	775	15838128	-	XF1527	-	general secretory pathway protein D precursor
1524	 38.65	-2	1481036..1481242	+	68	15838129	-	XF1528	-	hypothetical protein
1525	 53.90	0	1481230..1487409	+	2059	15838130	-	XF1529	-	surface protein
1526	 46.22	0	1487748..1488368	+	206	15838131	-	XF1530	-	subunit C of alkyl hydroperoxide reductase
1527	 52.10	0	1488446..1490161	+	571	15838132	-	XF1531	-	subunit F of alkyl hydroperoxide reductase
1528	 52.56	0	1490224..1491201	+	325	15838133	-	XF1532	-	oxidative stress transcriptional regulator
1529	 55.22	0	1491327..1492016	+	229	15838134	-	XF1533	-	hypothetical protein
1530	 42.39	-1	1492333..1492575	+	80	15838135	rpmE2	XF1534	-	50S ribosomal protein L31 type B
1531	 47.60	0	1492803..1494092	+	429	15838136	gltA	XF1535	-	type II citrate synthase
1532	 50.64	0	1494311..1494703	-	130	15838137	rpsI	XF1536	-	30S ribosomal protein S9
1533	 52.68	0	1494708..1495136	-	142	15838138	rplM	XF1537	-	50S ribosomal protein L13
1534	 53.67	0	1495357..1496010	+	217	77747552	-	XF1538	-	ubiquinone biosynthesis protein
1535	 45.91	-1	1496178..1496972	-	264	15838140	-	XF1539	-	S-adenosylmethionine decarboxylase
1536	 52.75	0	1497115..1497804	+	229	15838141	-	XF1540	-	cAMP-regulatory protein
1537	 38.51	-2	1497899..1498072	+	57	15838142	-	XF1541	-	hypothetical protein
1538	 50.00	0	1498180..1498383	+	67	15838143	-	XF1542	-	hypothetical protein
1539	 55.72	0	1498464..1498664	+	66	15838144	-	XF1543	-	hypothetical protein
1540	 41.52	-1	1498643..1498813	+	56	15838145	-	XF1544	-	hypothetical protein
1541	 49.46	0	1499121..1499951	-	276	15838146	-	XF1545	-	molybdopterin biosynthesis protein
1542	 46.43	0	1500341..1500508	+	55	15838147	-	XF1546	-	hypothetical protein
1543	 53.03	0	1500688..1501149	+	153	15838148	-	XF1547	-	peptidoglycan-associated outer membrane lipoprotein precursor
1544	 52.48	0	1502301..1503773	-	490	15838149	-	XF1548	-	dihydrolipoamide dehydrogenase
1545	 51.36	0	1504174..1505349	-	391	15838150	-	XF1549	-	dihydrolipoamide acetyltransferase
1546	 54.08	0	1505392..1508220	-	942	77747553	kgd	XF1550	-	alpha-ketoglutarate decarboxylase
1547	 48.11	0	1509079..1509342	+	87	15838152	-	XF1551	-	hypothetical protein
1548	 56.58	0	1509414..1510682	-	422	15838153	-	XF1552	-	hypothetical protein
1549	 54.09	0	1510853..1512220	-	455	77747554	-	XF1553	-	adenylosuccinate lyase
1550	 53.26	0	1512833..1514242	+	469	161378165	fumC	XF1554	-	fumarate hydratase
1551	 52.16	0	1514347..1515201	-	284	15838156	-	XF1555	-	hypothetical protein
1552	 56.41	0	1515231..1515386	-	51	15838157	-	XF1556	-	hypothetical protein
1553	 55.02	0	1515383..1515631	-	82	15838158	-	XF1557	-	hypothetical protein
1554	 54.58	0	1515650..1515889	-	79	15838159	-	XF1558	-	single-stranded DNA binding protein
1555	 55.46	0	1515919..1516266	+	115	15838160	-	XF1559	-	hypothetical protein
1556	 53.86	0	1516245..1517150	+	301	15838161	-	XF1560	-	hypothetical protein
1557	 63.49	+1	1518193..1518948	+	251	15838162	-	XF1561	-	hypothetical protein
1558	 47.94	0	1519136..1519402	+	88	15838163	-	XF1562	-	hypothetical protein
1559	 55.46	0	1519389..1519727	+	112	15838164	-	XF1563	-	hypothetical protein
1560	 54.41	0	1519817..1520428	+	203	15838165	-	XF1564	-	phage-related lysozyme
1561	 56.06	0	1520421..1520750	+	109	15838166	-	XF1565	-	hypothetical protein
1562	 59.31	+1	1520740..1521201	+	153	15838167	-	XF1566	-	hypothetical protein
1563	 64.10	+1	1521182..1521415	+	77	15838168	-	XF1567	-	hypothetical protein
1564	 55.89	0	1521506..1521904	+	132	15838169	-	XF1568	-	hypothetical protein
1565	 55.73	0	1521888..1522838	+	316	15838170	-	XF1569	-	hypothetical protein
1566	 56.70	0	1522854..1523405	+	183	15838171	-	XF1570	-	hypothetical protein
1567	 58.40	0	1523387..1524790	+	467	15838172	-	XF1571	-	hypothetical protein
1568	 55.67	0	1524839..1525120	-	93	15838173	-	XF1572	-	hypothetical protein
1569	 53.39	0	1525117..1525455	-	112	15838174	-	XF1573	-	hypothetical protein
1570	 62.41	+1	1525528..1526373	+	281	15838175	-	XF1574	-	plasmid-related protein
1571	 63.40	+1	1526370..1527563	+	397	15838176	-	XF1575	-	hypothetical protein
1572	 60.25	+1	1527591..1528073	+	160	15838177	-	XF1576	-	hypothetical protein
1573	 57.52	0	1528083..1529066	+	327	15838178	-	XF1577	-	hypothetical protein
1574	 62.33	+1	1529130..1529429	+	99	15838179	-	XF1578	-	hypothetical protein
1575	 62.13	+1	1529432..1529806	+	124	15838180	-	XF1579	-	hypothetical protein
1576	 63.71	+1	1529803..1530276	+	157	15838181	-	XF1580	-	hypothetical protein
1577	 56.69	0	1530257..1530637	+	126	15838182	-	XF1581	-	hypothetical protein
1578	 63.48	+1	1530624..1531094	+	156	15838183	-	XF1582	-	hypothetical protein
1579	 58.05	0	1531095..1532591	+	498	15838184	-	XF1583	-	hypothetical protein
1580	 57.53	0	1532601..1533038	+	145	15838185	-	XF1584	-	hypothetical protein
1581	 60.05	+1	1533035..1533457	+	140	15838186	-	XF1585	-	hypothetical protein
1582	 59.39	+1	1533484..1533648	+	54	15838187	-	XF1586	-	hypothetical protein
1583	 63.02	+1	1533605..1535494	+	629	77747555	-	XF1587	-	hypothetical protein
1584	 48.48	0	1535977..1536306	-	109	15838189	-	XF1588	-	hypothetical protein
1585	 51.75	0	1536445..1536873	-	142	15838190	-	XF1589	-	plasmid stabilization protein
1586	 50.96	0	1536874..1537134	-	86	15838191	-	XF1590	-	plasmid stabilization protein
1587	 61.61	+1	1537240..1538010	+	256	15838192	-	XF1591	-	hypothetical protein
1588	 59.12	+1	1538010..1538327	+	105	15838193	-	XF1592	-	hypothetical protein
1589	 58.60	+1	1538324..1539154	+	276	15838194	-	XF1593	-	hypothetical protein
1590	 58.41	+1	1539151..1539792	+	213	15838195	-	XF1594	-	hypothetical protein
1591	 64.41	+1	1539789..1540142	+	117	15838196	-	XF1595	-	hypothetical protein
1592	 62.00	+1	1540198..1540497	-	99	15838197	-	XF1596	-	hypothetical protein
1593	 58.59	+1	1540494..1540790	-	98	15838198	-	XF1597	-	hypothetical protein
1594	 53.01	0	1540893..1541075	+	60	15838199	-	XF1598	-	hypothetical protein
1595	 51.95	0	1541057..1541287	+	76	15838200	-	XF1599	-	hypothetical protein
1596	 52.15	0	1541391..1541948	-	185	15838201	-	XF1600	-	hypothetical protein
1597	 51.02	0	1542079..1543056	-	325	15838202	-	XF1601	-	hypothetical protein
1598	 52.93	0	1543053..1543904	-	283	15838203	-	XF1602	-	ABC transporter ATP-binding protein
1599	 54.32	0	1544147..1544308	+	53	15838204	-	XF1603	-	hypothetical protein
1600	 51.11	0	1544674..1545258	+	194	15838205	-	XF1604	-	ABC transporter vitamin B12 uptake permease
1601	 52.48	0	1545976..1546863	+	295	15838206	-	XF1605	-	peptidyl-prolyl cis-trans isomerase
1602	 50.11	0	1546888..1548240	+	450	15838207	-	XF1606	-	UDP-glucose dehydrogenase
1603	 49.37	0	1548233..1548469	+	78	15838208	-	XF1607	-	hypothetical protein
1604	 52.52	0	1548515..1549150	+	211	15838209	-	XF1608	-	hypothetical protein
1605	 47.78	0	1550004..1551284	+	426	15838210	-	XF1609	-	glucose/galactose transporter
1606	 51.52	0	1551281..1552297	+	338	15838211	-	XF1610	-	fructokinase
1607	 52.49	0	1552294..1553499	+	401	15838212	-	XF1611	-	hypothetical protein
1608	 33.33	-2	1553568..1553720	-	50	15838213	-	XF1612	-	hypothetical protein
1609	 37.22	-2	1553692..1553871	+	59	15838214	-	XF1613	-	hypothetical protein
1610	 44.71	-1	1553877..1555361	-	494	15838215	-	XF1614	-	penicillin binding protein
1611	 50.00	0	1556082..1556207	-	41	15838216	-	XF1615	-	hypothetical protein
1612	 56.67	0	1556201..1556320	-	39	15838217	-	XF1616	-	hypothetical protein
1613	 56.56	0	1556498..1557427	-	309	15838218	-	XF1617	-	hypothetical protein
1614	 43.33	-1	1557573..1557782	-	69	15838219	-	XF1618	-	hypothetical protein
1615	 44.23	-1	1557944..1558099	+	51	15838220	-	XF1619	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.