IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1453	 57.32	0	1403300..1404037	-	245	15838058	-	XF1457	-	pteridine reductase
1454	 54.68	0	1404124..1405308	+	394	77747547	-	XF1458	-	hypothetical protein
1455	 56.35	0	1405296..1405712	+	138	15838060	-	XF1459	-	hypothetical protein
1456	 57.16	0	1405732..1406751	-	339	15838061	-	XF1460	-	glucokinase
1457	 53.41	0	1407100..1407363	+	87	15838062	-	XF1461	-	hypothetical protein
1458	 51.50	0	1407612..1408745	+	377	15838063	-	XF1462	-	glucose/galactose transporter
1459	 54.67	0	1408836..1409819	+	327	15838064	-	XF1463	-	LacI family transcription regulator
1460	 56.68	0	1409816..1410856	+	346	77747548	-	XF1464	-	glucosamine--fructose-6-phosphate aminotransferase
1461	 59.52	+1	1410853..1412013	+	386	15838066	-	XF1465	-	N-acetylglucosamine-6-phosphate deacetylase
1462	 44.00	-1	1412152..1412301	-	49	15838067	-	XF1466	-	hypothetical protein
1463	 54.29	0	1412495..1413391	+	298	15838068	-	XF1467	-	acetyl-CoA carboxylase subunit beta
1464	 55.68	0	1413388..1414734	+	448	15838069	-	XF1468	-	phosphomannomutase
1465	 56.14	0	1414818..1415672	-	284	15838070	-	XF1469	-	hypothetical protein
1466	 56.94	0	1415669..1416799	-	376	15838071	-	XF1470	-	hypothetical protein
1467	 50.64	0	1417067..1417222	+	51	15838072	-	XF1471	-	hypothetical protein
1468	 56.67	0	1417316..1417645	-	109	15838073	-	XF1472	-	benzene 1,2-dioxygenase, ferredoxin protein
1469	 58.27	0	1417749..1418999	-	416	15838074	-	XF1473	-	aminotransferase
1470	 58.63	+1	1418987..1420255	-	422	15838075	-	XF1474	-	ABC transporter membrane protein
1471	 55.08	0	1420255..1421091	-	278	15838076	-	XF1475	-	ABC transporter ATP-binding protein
1472	 54.66	0	1421228..1422685	-	485	15838077	-	XF1476	-	cysteine desulfurase activator complex subunit SufB
1473	 58.66	+1	1422706..1423167	-	153	15838078	-	XF1477	-	hypothetical protein
1474	 49.05	0	1423379..1423798	+	139	15838079	-	XF1478	-	hypothetical protein
1475	 50.96	0	1424434..1426725	+	763	15838080	-	XF1479	-	peptidase
1476	 52.75	0	1426722..1427030	+	102	15838081	-	XF1480	-	hypothetical protein
1477	 55.79	0	1427040..1427894	+	284	15838082	dapF	XF1481	-	diaminopimelate epimerase
1478	 53.60	0	1427882..1428562	+	226	15838083	-	XF1482	-	hypothetical protein
1479	 56.27	0	1428586..1429470	+	294	15838084	xerC	XF1483	-	site-specific tyrosine recombinase XerC
1480	 54.17	0	1430060..1430611	+	183	77747549	-	XF1484	-	ATP-dependent protease peptidase subunit
1481	 51.38	0	1430680..1432059	+	459	15838086	hslU	XF1485	-	ATP-dependent protease ATP-binding subunit
1482	 50.59	0	1432275..1433630	-	451	15838087	-	XF1486	-	hypothetical protein
1483	 53.28	0	1433938..1434699	+	253	15838088	ubiE	XF1487	-	ubiquinone/menaquinone biosynthesis methyltransferase
1484	 50.84	0	1434906..1436921	+	671	15838089	-	XF1488	-	aminopeptidase N
1485	 45.64	-1	1437445..1438086	+	213	15838090	-	XF1489	-	hypothetical protein
1486	 47.29	0	1438362..1438841	-	159	15838091	-	XF1490	-	MarR family transcriptional regulator
1487	 45.07	-1	1439192..1439404	-	70	15838092	-	XF1491	-	hypothetical protein
1488	 38.50	-2	1439752..1439964	-	70	15838093	-	XF1492	-	hypothetical protein
1489	 46.04	0	1440446..1440862	+	138	15838094	-	XF1493	-	virulence regulator
1490	 52.70	0	1442152..1443039	-	295	15838095	-	XF1494	-	hypothetical protein
1491	 51.68	0	1443091..1443537	-	148	15838096	-	XF1495	-	hypothetical protein
1492	 52.49	0	1444050..1446101	+	683	15838097	-	XF1496	-	TonB-dependent receptor for iron transport
1493	 55.18	0	1446343..1447056	-	237	15838098	-	XF1497	-	phosphoadenosine phosphosulfate reductase
1494	 57.23	0	1447053..1448759	-	568	77747550	-	XF1498	-	sulfite reductase subunit beta
1495	 55.79	0	1448883..1450721	-	612	15838100	-	XF1499	-	NADPH-sulfite reductase, flavoprotein subunit
1496	 52.20	0	1450879..1451832	+	317	15838101	-	XF1500	-	sulfate adenylyltransferase subunit 2
1497	 54.16	0	1451832..1453814	+	660	15838102	-	XF1501	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
1498	 50.33	0	1453924..1454223	-	99	15838103	-	XF1502	-	DNA-directed RNA polymerase subunit omega
1499	 52.52	0	1454456..1455070	-	204	15838104	gmk	XF1503	-	guanylate kinase
1500	 54.98	0	1455152..1456015	-	287	161378166	-	XF1504	-	hypothetical protein
1501	 57.30	0	1456113..1456838	+	241	15838106	rph	XF1505	-	ribonuclease PH
1502	 54.80	0	1456919..1457533	+	204	15838107	-	XF1506	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1503	 52.86	0	1457756..1458907	+	383	15838108	-	XF1507	-	coproporphyrinogen III oxidase
1504	 55.21	0	1458985..1461480	+	831	77747551	-	XF1508	-	hypothetical protein
1505	 53.98	0	1461477..1461815	+	112	15838110	-	XF1509	-	hypothetical protein
1506	 54.35	0	1461898..1462839	-	313	15838111	-	XF1510	-	proline imino-peptidase
1507	 54.55	0	1463052..1463216	+	54	15838112	-	XF1511	-	hypothetical protein
1508	 58.82	+1	1463188..1464015	-	275	15838113	-	XF1512	-	protoporphyrinogen oxidase
1509	 46.17	0	1464148..1464669	+	173	15838114	-	XF1513	-	hypothetical protein
1510	 41.23	-1	1464666..1465577	+	303	15838115	-	XF1514	-	hypothetical protein
1511	 46.15	0	1465617..1465811	+	64	15838116	-	XF1515	-	hypothetical protein
1512	 53.00	0	1466282..1469296	+	1004	15838117	-	XF1516	-	surface-exposed outer membrane protein
1513	 52.11	0	1469537..1471288	+	583	15838118	-	XF1517	-	general secretory pathway protein E
1514	 54.02	0	1471324..1472541	+	405	15838119	-	XF1518	-	general secretory pathway protein F
1515	 49.40	0	1472695..1473192	+	165	15838120	-	XF1519	-	general secretory pathway protein G precursor
1516	 54.04	0	1473198..1473704	+	168	15838121	-	XF1520	-	general secretory pathway protein H precursor
1517	 56.14	0	1473701..1474099	+	132	15838122	-	XF1521	-	general secretory pathway protein I precursor
1518	 54.39	0	1474096..1474722	+	208	15838123	-	XF1522	-	general secretion pathway protein J
1519	 56.50	0	1474722..1475567	+	281	15838124	-	XF1523	-	general secretory pathway protein K
1520	 54.81	0	1475540..1476694	+	384	15838125	-	XF1524	-	general secretory pathway protein L
1521	 52.45	0	1476675..1477307	+	210	15838126	-	XF1525	-	hypothetical protein
1522	 52.08	0	1477297..1478064	+	255	15838127	-	XF1526	-	hypothetical protein
1523	 53.01	0	1478109..1480436	+	775	15838128	-	XF1527	-	general secretory pathway protein D precursor
1524	 38.65	-2	1481036..1481242	+	68	15838129	-	XF1528	-	hypothetical protein
1525	 53.90	0	1481230..1487409	+	2059	15838130	-	XF1529	-	surface protein
1526	 46.22	0	1487748..1488368	+	206	15838131	-	XF1530	-	subunit C of alkyl hydroperoxide reductase
1527	 52.10	0	1488446..1490161	+	571	15838132	-	XF1531	-	subunit F of alkyl hydroperoxide reductase
1528	 52.56	0	1490224..1491201	+	325	15838133	-	XF1532	-	oxidative stress transcriptional regulator
1529	 55.22	0	1491327..1492016	+	229	15838134	-	XF1533	-	hypothetical protein
1530	 42.39	-1	1492333..1492575	+	80	15838135	rpmE2	XF1534	-	50S ribosomal protein L31 type B
1531	 47.60	0	1492803..1494092	+	429	15838136	gltA	XF1535	-	type II citrate synthase
1532	 50.64	0	1494311..1494703	-	130	15838137	rpsI	XF1536	-	30S ribosomal protein S9
1533	 52.68	0	1494708..1495136	-	142	15838138	rplM	XF1537	-	50S ribosomal protein L13
1534	 53.67	0	1495357..1496010	+	217	77747552	-	XF1538	-	ubiquinone biosynthesis protein
1535	 45.91	-1	1496178..1496972	-	264	15838140	-	XF1539	-	S-adenosylmethionine decarboxylase
1536	 52.75	0	1497115..1497804	+	229	15838141	-	XF1540	-	cAMP-regulatory protein
1537	 38.51	-2	1497899..1498072	+	57	15838142	-	XF1541	-	hypothetical protein
1538	 50.00	0	1498180..1498383	+	67	15838143	-	XF1542	-	hypothetical protein
1539	 55.72	0	1498464..1498664	+	66	15838144	-	XF1543	-	hypothetical protein
1540	 41.52	-1	1498643..1498813	+	56	15838145	-	XF1544	-	hypothetical protein
1541	 49.46	0	1499121..1499951	-	276	15838146	-	XF1545	-	molybdopterin biosynthesis protein
1542	 46.43	0	1500341..1500508	+	55	15838147	-	XF1546	-	hypothetical protein
1543	 53.03	0	1500688..1501149	+	153	15838148	-	XF1547	-	peptidoglycan-associated outer membrane lipoprotein precursor
1544	 52.48	0	1502301..1503773	-	490	15838149	-	XF1548	-	dihydrolipoamide dehydrogenase
1545	 51.36	0	1504174..1505349	-	391	15838150	-	XF1549	-	dihydrolipoamide acetyltransferase
1546	 54.08	0	1505392..1508220	-	942	77747553	kgd	XF1550	-	alpha-ketoglutarate decarboxylase
1547	 48.11	0	1509079..1509342	+	87	15838152	-	XF1551	-	hypothetical protein
1548	 56.58	0	1509414..1510682	-	422	15838153	-	XF1552	-	hypothetical protein
1549	 54.09	0	1510853..1512220	-	455	77747554	-	XF1553	-	adenylosuccinate lyase
1550	 53.26	0	1512833..1514242	+	469	161378165	fumC	XF1554	-	fumarate hydratase
1551	 52.16	0	1514347..1515201	-	284	15838156	-	XF1555	-	hypothetical protein
1552	 56.41	0	1515231..1515386	-	51	15838157	-	XF1556	-	hypothetical protein
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.