IslandPathversion 1.0

IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 52.19 STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1403	 47.01	0	1357870..1358220	-	116	15838008	-	XF1407	-	sigma-54 modulation protein
1404	 53.56	0	1358278..1359666	-	462	15838009	-	XF1408	-	RNA polymerase factor sigma-54
1405	 56.57	0	1359708..1360430	-	240	15838010	-	XF1409	-	ABC transporter ATP-binding protein
1406	 51.98	0	1360430..1360960	-	176	15838011	-	XF1410	-	hypothetical protein
1407	 53.51	0	1360938..1361507	-	189	15838012	-	XF1411	-	hypothetical protein
1408	 55.56	0	1361504..1362052	-	182	15838013	-	XF1412	-	hypothetical protein
1409	 56.09	0	1362070..1363071	-	333	15838014	-	XF1413	-	polysialic acid capsule expression protein
1410	 50.88	0	1363133..1363360	+	75	15838015	-	XF1414	-	hypothetical protein
1411	 54.54	0	1363430..1364707	+	425	15838016	-	XF1415	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
1412	 52.15	0	1364704..1365006	+	100	15838017	-	XF1416	-	hypothetical protein
1413	 51.44	0	1365072..1365314	-	80	15838018	-	XF1417	-	hypothetical protein
1414	 46.72	0	1365385..1365780	-	131	15838019	-	XF1418	-	hypothetical protein
1415	 47.71	0	1365938..1366855	+	305	15838020	-	XF1419	-	acetyltransferase
1416	 44.78	-1	1366827..1367027	+	66	15838021	-	XF1420	-	hypothetical protein
1417	 53.44	0	1367034..1367222	+	62	15838022	-	XF1421	-	hypothetical protein
1418	 51.67	0	1367323..1367562	-	79	15838023	-	XF1422	-	hypothetical protein
1419	 57.72	0	1367563..1371531	-	1322	15838024	-	XF1423	-	phosphoribosylformylglycinamidine synthase
1420	 53.87	0	1371728..1372516	-	262	15838025	-	XF1424	-	chitinase
1421	 56.72	0	1372648..1373622	-	324	15838026	xerD	XF1425	-	site-specific tyrosine recombinase XerD
1422	 55.70	0	1373879..1374772	-	297	15838027	-	XF1426	-	ion transporter
1423	 58.17	0	1374840..1376075	+	411	15838028	argD	XF1427	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
1424	 56.92	0	1376291..1377655	-	454	15838029	-	XF1428	-	glutamate-cysteine ligase precursor
1425	 52.83	0	1377680..1377838	+	52	15838030	-	XF1429	-	hypothetical protein
1426	 53.33	0	1377930..1378619	-	229	15838031	-	XF1430	-	GTPase EngB
1427	 43.52	-1	1378616..1378723	-	35	15838032	-	XF1431	-	hypothetical protein
1428	 35.15	-2	1378706..1378870	+	54	15838033	-	XF1432	-	hypothetical protein
1429	 37.50	-2	1379000..1379095	+	31	15838034	-	XF1433	-	hypothetical protein
1430	 47.01	0	1379342..1380277	-	311	15838035	-	XF1434	-	hypothetical protein
1431	 39.87	-1	1380837..1380989	+	50	15838036	-	XF1435	-	hypothetical protein
1432	 53.24	0	1381050..1381697	+	215	77747546	-	XF1436	-	disulfide oxidoreductase
1433	 53.26	0	1381805..1382587	+	260	15838038	-	XF1437	-	thiol:disulfide interchange protein
1434	 52.44	0	1382633..1383370	+	245	15838039	-	XF1438	-	hypothetical protein
1435	 53.50	0	1383479..1384093	-	204	15838040	-	XF1439	-	hypothetical protein
1436	 55.18	0	1384090..1385229	-	379	15838041	trmU	XF1440	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1437	 53.81	0	1385226..1385684	-	152	15838042	-	XF1441	-	phosphohydrolase
1438	 46.42	0	1385858..1386178	+	106	15838043	clpS	XF1442	-	ATP-dependent Clp protease adaptor protein ClpS
1439	 50.90	0	1386311..1388587	+	758	15838044	-	XF1443	-	ATP-dependent Clp protease subunit
1440	 42.38	-1	1388638..1388847	-	69	15838045	-	XF1444	-	hypothetical protein
1441	 43.38	-1	1388920..1389138	-	72	15838046	infA	XF1445	-	translation initiation factor IF-1
1442	 55.46	0	1389255..1389986	-	243	15838047	aat	XF1446	-	leucyl/phenylalanyl-tRNA--protein transferase
1443	 54.61	0	1389998..1391125	-	375	15838048	-	XF1447	-	hypothetical protein
1444	 53.42	0	1391562..1392527	-	321	15838049	-	XF1448	-	thioredoxin reductase
1445	 43.81	-1	1392676..1392780	+	34	15838050	-	XF1449	-	hypothetical protein
1446	 52.99	0	1392794..1395148	+	784	15838051	-	XF1450	-	cell division protein
1447	 54.06	0	1395333..1397243	+	636	15838052	-	XF1451	-	hypothetical protein
1448	 50.72	0	1397805..1398431	+	208	161378168	lolA	XF1452	-	outer-membrane lipoprotein carrier protein
1449	 54.82	0	1398556..1399923	+	455	161378167	-	XF1453	-	recombination factor protein RarA
1450	 49.27	0	1399950..1400495	+	181	15838055	-	XF1454	-	hypothetical protein
1451	 53.91	0	1401148..1402644	+	498	15838056	-	XF1455	-	two-component system, hybrid sensor/regulatory protein
1452	 51.59	0	1402660..1403289	+	209	15838057	-	XF1456	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1453	 57.32	0	1403300..1404037	-	245	15838058	-	XF1457	-	pteridine reductase
1454	 54.68	0	1404124..1405308	+	394	77747547	-	XF1458	-	hypothetical protein
1455	 56.35	0	1405296..1405712	+	138	15838060	-	XF1459	-	hypothetical protein
1456	 57.16	0	1405732..1406751	-	339	15838061	-	XF1460	-	glucokinase
1457	 53.41	0	1407100..1407363	+	87	15838062	-	XF1461	-	hypothetical protein
1458	 51.50	0	1407612..1408745	+	377	15838063	-	XF1462	-	glucose/galactose transporter
1459	 54.67	0	1408836..1409819	+	327	15838064	-	XF1463	-	LacI family transcription regulator
1460	 56.68	0	1409816..1410856	+	346	77747548	-	XF1464	-	glucosamine--fructose-6-phosphate aminotransferase
1461	 59.52	+1	1410853..1412013	+	386	15838066	-	XF1465	-	N-acetylglucosamine-6-phosphate deacetylase
1462	 44.00	-1	1412152..1412301	-	49	15838067	-	XF1466	-	hypothetical protein
1463	 54.29	0	1412495..1413391	+	298	15838068	-	XF1467	-	acetyl-CoA carboxylase subunit beta
1464	 55.68	0	1413388..1414734	+	448	15838069	-	XF1468	-	phosphomannomutase
1465	 56.14	0	1414818..1415672	-	284	15838070	-	XF1469	-	hypothetical protein
1466	 56.94	0	1415669..1416799	-	376	15838071	-	XF1470	-	hypothetical protein
1467	 50.64	0	1417067..1417222	+	51	15838072	-	XF1471	-	hypothetical protein
1468	 56.67	0	1417316..1417645	-	109	15838073	-	XF1472	-	benzene 1,2-dioxygenase, ferredoxin protein
1469	 58.27	0	1417749..1418999	-	416	15838074	-	XF1473	-	aminotransferase
1470	 58.63	+1	1418987..1420255	-	422	15838075	-	XF1474	-	ABC transporter membrane protein
1471	 55.08	0	1420255..1421091	-	278	15838076	-	XF1475	-	ABC transporter ATP-binding protein
1472	 54.66	0	1421228..1422685	-	485	15838077	-	XF1476	-	cysteine desulfurase activator complex subunit SufB
1473	 58.66	+1	1422706..1423167	-	153	15838078	-	XF1477	-	hypothetical protein
1474	 49.05	0	1423379..1423798	+	139	15838079	-	XF1478	-	hypothetical protein
1475	 50.96	0	1424434..1426725	+	763	15838080	-	XF1479	-	peptidase
1476	 52.75	0	1426722..1427030	+	102	15838081	-	XF1480	-	hypothetical protein
1477	 55.79	0	1427040..1427894	+	284	15838082	dapF	XF1481	-	diaminopimelate epimerase
1478	 53.60	0	1427882..1428562	+	226	15838083	-	XF1482	-	hypothetical protein
1479	 56.27	0	1428586..1429470	+	294	15838084	xerC	XF1483	-	site-specific tyrosine recombinase XerC
1480	 54.17	0	1430060..1430611	+	183	77747549	-	XF1484	-	ATP-dependent protease peptidase subunit
1481	 51.38	0	1430680..1432059	+	459	15838086	hslU	XF1485	-	ATP-dependent protease ATP-binding subunit
1482	 50.59	0	1432275..1433630	-	451	15838087	-	XF1486	-	hypothetical protein
1483	 53.28	0	1433938..1434699	+	253	15838088	ubiE	XF1487	-	ubiquinone/menaquinone biosynthesis methyltransferase
1484	 50.84	0	1434906..1436921	+	671	15838089	-	XF1488	-	aminopeptidase N
1485	 45.64	-1	1437445..1438086	+	213	15838090	-	XF1489	-	hypothetical protein
1486	 47.29	0	1438362..1438841	-	159	15838091	-	XF1490	-	MarR family transcriptional regulator
1487	 45.07	-1	1439192..1439404	-	70	15838092	-	XF1491	-	hypothetical protein
1488	 38.50	-2	1439752..1439964	-	70	15838093	-	XF1492	-	hypothetical protein
1489	 46.04	0	1440446..1440862	+	138	15838094	-	XF1493	-	virulence regulator
1490	 52.70	0	1442152..1443039	-	295	15838095	-	XF1494	-	hypothetical protein
1491	 51.68	0	1443091..1443537	-	148	15838096	-	XF1495	-	hypothetical protein
1492	 52.49	0	1444050..1446101	+	683	15838097	-	XF1496	-	TonB-dependent receptor for iron transport
1493	 55.18	0	1446343..1447056	-	237	15838098	-	XF1497	-	phosphoadenosine phosphosulfate reductase
1494	 57.23	0	1447053..1448759	-	568	77747550	-	XF1498	-	sulfite reductase subunit beta
1495	 55.79	0	1448883..1450721	-	612	15838100	-	XF1499	-	NADPH-sulfite reductase, flavoprotein subunit
1496	 52.20	0	1450879..1451832	+	317	15838101	-	XF1500	-	sulfate adenylyltransferase subunit 2
1497	 54.16	0	1451832..1453814	+	660	15838102	-	XF1501	-	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein
1498	 50.33	0	1453924..1454223	-	99	15838103	-	XF1502	-	DNA-directed RNA polymerase subunit omega
1499	 52.52	0	1454456..1455070	-	204	15838104	gmk	XF1503	-	guanylate kinase
1500	 54.98	0	1455152..1456015	-	287	161378166	-	XF1504	-	hypothetical protein
1501	 57.30	0	1456113..1456838	+	241	15838106	rph	XF1505	-	ribonuclease PH
1502	 54.80	0	1456919..1457533	+	204	15838107	-	XF1506	-	putative deoxyribonucleotide triphosphate pyrophosphatase
52.19	MEAN

6.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.