IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1297	 52.86	0	1251130..1252056	-	308	15837902	-	XF1301	-	hypothetical protein
1298	 53.66	0	1252060..1252920	-	286	15837903	-	XF1302	-	ABC transporter ATP-binding protein
1299	 53.23	0	1252896..1254086	-	396	15837904	-	XF1303	-	hypothetical protein
1300	 53.37	0	1254124..1255386	+	420	15837905	-	XF1304	-	hypothetical protein
1301	 43.38	-1	1255566..1255784	+	72	15837906	-	XF1305	-	hypothetical protein
1302	 39.30	-2	1255840..1256040	+	66	15837907	-	XF1306	-	hypothetical protein
1303	 35.02	-2	1256059..1256295	-	78	15837908	-	XF1307	-	hypothetical protein
1304	 47.22	0	1258417..1258704	+	95	15837909	-	XF1308	-	hypothetical protein
1305	 54.59	0	1258846..1259955	+	369	15837910	-	XF1309	-	rod shape-determining protein
1306	 53.84	0	1260153..1261103	+	316	15837911	-	XF1310	-	rod shape-determining protein
1307	 53.91	0	1261100..1261585	+	161	15837912	-	XF1311	-	rod shape-determining protein
1308	 54.20	0	1261569..1263653	+	694	15837913	-	XF1312	-	penicillin binding protein 2
1309	 50.80	0	1263650..1264771	+	373	15837914	-	XF1313	-	rod shape-determining protein
1310	 50.86	0	1264867..1265910	+	347	15837915	queA	XF1314	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1311	 44.63	-1	1266370..1266546	+	58	15837916	-	XF1315	-	hypothetical protein
1312	 54.24	0	1266639..1268795	+	718	15837917	-	XF1316	-	ATP:GTP 3'-pyrophosphotranferase
1313	 48.21	0	1268807..1269001	+	64	15837918	-	XF1317	-	hypothetical protein
1314	 57.34	0	1268973..1270376	+	467	15837919	-	XF1318	-	hypothetical protein
1315	 54.04	0	1270898..1271404	-	168	15837920	-	XF1319	-	hypothetical protein
1316	 48.84	0	1271464..1271721	-	85	15837921	minE	XF1320	-	cell division topological specificity factor MinE
1317	 53.09	0	1271724..1272533	-	269	15837922	-	XF1321	-	septum site-determining protein
1318	 53.84	0	1272570..1273286	-	238	15837923	minC	XF1322	-	septum formation inhibitor
1319	 52.85	0	1273302..1273880	-	192	77747542	-	XF1323	-	hypothetical protein
1320	 47.90	0	1274283..1275470	+	395	15837925	-	XF1324	-	hypothetical protein
1321	 50.68	0	1275598..1275816	+	72	15837926	-	XF1325	-	hypothetical protein
1322	 55.76	0	1275868..1276518	+	216	15837927	-	XF1326	-	DNA-3-methyladenine glycosidase
1323	 51.23	0	1276861..1277430	-	189	15837928	-	XF1327	-	hypothetical protein
1324	 54.67	0	1277448..1278014	-	188	15837929	-	XF1328	-	cytochrome B561
1325	 53.05	0	1278027..1278731	-	234	15837930	-	XF1329	-	hypothetical protein
1326	 56.20	0	1278851..1282444	+	1197	15837931	-	XF1330	-	hypothetical protein
1327	 54.90	0	1283039..1283140	-	33	15837932	-	XF1331	-	hypothetical protein
1328	 58.69	+1	1283186..1284250	-	354	15837933	hemE	XF1332	-	uroporphyrinogen decarboxylase
1329	 52.94	0	1284335..1284589	-	84	15837934	-	XF1333	-	hypothetical protein
1330	 58.99	+1	1284586..1285770	-	394	15837935	aroB	XF1334	-	3-dehydroquinate synthase
1331	 54.88	0	1285767..1286309	-	180	15837936	aroK	XF1335	-	shikimate kinase
1332	 50.70	0	1286325..1286537	-	70	15837937	-	XF1336	-	hypothetical protein
1333	 55.18	0	1286542..1287168	+	208	15837938	-	XF1337	-	pyridoxamine 5'-phosphate oxidase
1334	 56.17	0	1287414..1289156	-	580	15837939	-	XF1338	-	glutaminyl-tRNA synthetase
1335	 46.06	0	1289263..1289427	+	54	15837940	-	XF1339	-	hypothetical protein
1336	 50.32	0	1289545..1289856	+	103	15837941	-	XF1340	-	hypothetical protein
1337	 59.70	+1	1289853..1290656	+	267	15837942	-	XF1341	-	copper homeostasis protein
1338	 41.44	-1	1290764..1290874	+	36	15837943	-	XF1342	-	hypothetical protein
1339	 51.85	0	1290910..1291206	+	98	15837944	-	XF1343	-	hypothetical protein
1340	 53.53	0	1291349..1292368	+	339	15837945	-	XF1344	-	ABC transporter sulfate binding protein
1341	 53.66	0	1292372..1293232	+	286	15837946	-	XF1345	-	ABC transporter sulfate permease
1342	 53.44	0	1293229..1294188	+	319	15837947	-	XF1346	-	ABC transporter sulfate permease
1343	 55.49	0	1294202..1295248	+	348	15837948	-	XF1347	-	sulfate ABC transporter ATP-binding protein
1344	 51.52	0	1295470..1296420	-	316	15837949	-	XF1348	-	lipid A biosynthesis lauroyl acyltransferase
1345	 43.65	-1	1296448..1296573	-	41	15837950	-	XF1349	-	hypothetical protein
1346	 46.90	0	1296789..1298645	+	618	15837951	-	XF1350	-	RNA polymerase sigma factor RpoD
1347	 43.41	-1	1298657..1298785	-	42	15837952	-	XF1351	-	hypothetical protein
1348	 38.51	-2	1298988..1299161	+	57	15837953	-	XF1352	-	hypothetical protein
1349	 54.58	0	1299220..1301469	-	749	15837954	-	XF1353	-	DNA topoisomerase IV subunit A
1350	 51.14	0	1301820..1302257	+	145	15837955	-	XF1354	-	MarR family transcriptional regulator
1351	 51.17	0	1302815..1303027	+	70	15837956	-	XF1355	-	hypothetical protein
1352	 56.90	0	1303045..1303812	-	255	15837957	-	XF1356	-	biotin biosynthesis protein
1353	 58.87	+1	1303957..1305162	-	401	15837958	-	XF1357	-	8-amino-7-oxononanoate synthase
1354	 52.92	0	1305215..1305694	+	159	15837959	-	XF1358	-	hypothetical protein
1355	 55.41	0	1305725..1306888	+	387	15837960	-	XF1359	-	hypothetical protein
1356	 51.86	0	1306885..1307796	+	303	15837961	-	XF1360	-	protoheme IX farnesyltransferase
1357	 52.38	0	1308465..1309304	+	279	15837962	-	XF1361	-	hypothetical protein
1358	 54.76	0	1309661..1310911	-	416	15837963	cca	XF1362	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
1359	 54.62	0	1311004..1313136	-	710	15837964	-	XF1363	-	soluble lytic murein transglycosylase precursor
1360	 42.95	-1	1313126..1313281	-	51	15837965	-	XF1364	-	hypothetical protein
1361	 54.31	0	1313682..1314563	-	293	15837966	-	XF1365	-	phosphatidylserine decarboxylase
1362	 52.49	0	1314560..1314940	-	126	15837967	-	XF1366	-	hypothetical protein
1363	 54.25	0	1314918..1315070	-	50	15837968	-	XF1367	-	hypothetical protein
1364	 55.02	0	1315140..1316066	+	308	77747543	-	XF1368	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1365	 55.91	0	1316072..1317196	+	374	15837970	-	XF1369	-	chorismate synthase
1366	 45.28	-1	1317281..1317439	+	52	15837971	-	XF1370	-	hypothetical protein
1367	 52.27	0	1317583..1318617	+	344	15837972	-	XF1371	-	aspartate-semialdehyde dehydrogenase
1368	 55.56	0	1318655..1320571	+	638	15837973	-	XF1372	-	hypothetical protein
1369	 56.98	0	1320613..1321386	+	257	15837974	truA	XF1373	-	tRNA pseudouridine synthase A
1370	 55.07	0	1321356..1322045	+	229	15837975	-	XF1374	-	N-(5'-phosphoribosyl)anthranilate isomerase
1371	 55.34	0	1322546..1323763	+	405	77747544	-	XF1375	-	tryptophan synthase subunit beta
1372	 58.74	+1	1323889..1324695	+	268	15837977	trpA	XF1376	-	tryptophan synthase subunit alpha
1373	 51.71	0	1324700..1324933	+	77	15837978	-	XF1377	-	hypothetical protein
1374	 56.90	0	1324927..1326318	-	463	15837979	-	XF1378	-	DNA repair protein RadA
1375	 55.07	0	1326516..1327481	+	321	15837980	-	XF1379	-	luciferase
1376	 54.51	0	1327682..1328158	-	158	15837981	-	XF1380	-	hypothetical protein
1377	 56.91	0	1328281..1330218	-	645	15837982	-	XF1381	-	DNA helicase
1378	 48.73	0	1330263..1330853	-	196	15837983	-	XF1382	-	hypothetical protein
1379	 57.31	0	1330898..1335298	+	1466	77747545	-	XF1383	-	helicase, ATP dependent
1380	 52.66	0	1335311..1336852	-	513	15837985	-	XF1384	-	hypothetical protein
1381	 55.13	0	1337226..1340207	+	993	15837986	-	XF1385	-	glycine dehydrogenase
1382	 47.62	0	1340274..1340420	+	48	15837987	-	XF1386	-	hypothetical protein
1383	 50.58	0	1340573..1340914	-	113	15837988	-	XF1387	-	cytochrome O ubiquinol oxidase, subunit IV
1384	 51.56	0	1340914..1341522	-	202	15837989	-	XF1388	-	cytochrome O ubiquinol oxidase, subunit III
1385	 53.29	0	1341528..1343546	-	672	15837990	-	XF1389	-	cytochrome O ubiquinol oxidase, subunit I
1386	 50.73	0	1343519..1344478	-	319	15837991	-	XF1390	-	cytochrome O ubiquinol oxidase, subunit II
1387	 54.45	0	1344942..1345940	-	332	15837992	-	XF1391	-	octaprenyl-diphosphate synthase
1388	 55.15	0	1346189..1346683	+	164	15837993	-	XF1392	-	single-strand DNA-binding protein
1389	 53.59	0	1347113..1347265	-	50	15837994	-	XF1393	-	hypothetical protein
1390	 37.68	-2	1347806..1347943	+	45	15837995	-	XF1394	-	hypothetical protein
1391	 42.28	-1	1347953..1348075	+	40	15837996	-	XF1395	-	hypothetical protein
1392	 42.13	-1	1348050..1348265	-	71	15837997	-	XF1396	-	hypothetical protein
1393	 51.75	0	1348297..1349208	+	303	15837998	-	XF1397	-	hypothetical protein
1394	 50.70	0	1349495..1350715	+	406	15837999	-	XF1398	-	Na+/H+ exchange protein
1395	 54.55	0	1350892..1351419	-	175	15838000	-	XF1399	-	lactoylglutathione lyase
1396	 54.17	0	1351542..1351757	-	71	15838001	-	XF1400	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.