IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1231	 55.85	0	1190039..1190935	+	298	15837836	prpB	XF1234	-	2-methylisocitrate lyase
1232	 53.85	0	1191830..1191985	+	51	15837837	-	XF1235	-	hypothetical protein
1233	 50.94	0	1192109..1192426	+	105	15837838	-	XF1236	-	hypothetical protein
1234	 51.38	0	1192742..1193068	+	108	15837839	-	XF1237	-	hypothetical protein
1235	 57.74	0	1193049..1193216	+	55	15837840	-	XF1238	-	hypothetical protein
1236	 52.94	0	1193439..1193846	+	135	15837841	-	XF1239	-	hypothetical protein
1237	 54.07	0	1193891..1194136	-	81	15837842	-	XF1240	-	hypothetical protein
1238	 56.73	0	1197439..1197609	+	56	15837843	-	XF1242	-	hypothetical protein
1239	 58.39	0	1197640..1198884	+	414	15837844	-	XF1243	-	hypothetical protein
1240	 47.50	0	1199255..1199494	-	79	15837845	-	XF1244	-	hypothetical protein
1241	 39.35	-2	1200166..1200564	-	132	15837846	-	XF1245	-	hypothetical protein
1242	 36.26	-2	1200787..1200957	-	56	15837847	-	XF1246	-	hypothetical protein
1243	 45.74	-1	1201116..1201373	-	85	15837848	-	XF1247	-	hypothetical protein
1244	 47.83	0	1201673..1202203	-	176	15837849	-	XF1248	-	hypothetical protein
1245	 43.89	-1	1202390..1202569	-	59	15837850	-	XF1249	-	hypothetical protein
1246	 46.37	0	1203098..1203979	+	293	15837851	-	XF1250	-	arginine deaminase
1247	 57.14	0	1204131..1204319	-	62	15837852	-	XF1251	-	hypothetical protein
1248	 57.51	0	1204474..1209399	+	1641	15837853	-	XF1252	-	hypothetical protein
1249	 55.83	0	1209505..1210482	-	325	15837854	-	XF1253	-	lipase
1250	 56.02	0	1210746..1211600	+	284	77747536	-	XF1254	-	AraC family transcriptional regulator
1251	 44.20	-1	1211775..1212050	-	91	15837856	-	XF1255	-	hypothetical protein
1252	 41.67	-1	1212110..1212421	+	103	15837857	-	XF1256	-	hypothetical protein
1253	 50.86	0	1212489..1213070	+	193	15837858	-	XF1257	-	oligoribonuclease
1254	 50.76	0	1213288..1214205	-	305	15837859	-	XF1258	-	small conductance mechanosensitive ion channel
1255	 53.32	0	1214206..1216581	-	791	77747537	-	XF1259	-	phosphoenolpyruvate synthase
1256	 51.23	0	1216697..1217551	+	284	15837861	-	XF1260	-	hypothetical protein
1257	 53.50	0	1217649..1218134	+	161	15837862	-	XF1261	-	hypothetical protein
1258	 52.07	0	1218184..1218690	+	168	15837863	-	XF1262	-	7,8-dihydro-8-oxoguanine-triphosphatase
1259	 45.13	-1	1218919..1219113	-	64	15837864	-	XF1263	-	hypothetical protein
1260	 51.01	0	1219168..1220796	-	542	77747538	-	XF1264	-	hypothetical protein
1261	 45.70	-1	1220711..1221640	-	309	15837866	-	XF1265	-	hypothetical protein
1262	 56.76	0	1222051..1222161	+	36	15837867	-	XF1266	-	hypothetical protein
1263	 45.86	-1	1222318..1224369	-	683	15837868	-	XF1267	-	1,4-beta-cellobiosidase
1264	 29.55	-2	1224950..1225081	+	43	15837869	-	XF1268	-	hypothetical protein
1265	 53.30	0	1225694..1226815	-	373	15837870	-	XF1269	-	lipoyl synthase
1266	 58.12	0	1226852..1227541	-	229	15837871	lipB	XF1270	-	lipoyltransferase
1267	 55.56	0	1227529..1227807	-	92	15837872	-	XF1271	-	hypothetical protein
1268	 55.06	0	1227973..1228773	-	266	77747539	-	XF1272	-	hypothetical protein
1269	 52.33	0	1228784..1229062	-	92	15837874	-	XF1273	-	hypothetical protein
1270	 45.27	-1	1229074..1229316	-	80	15837875	-	XF1274	-	hypothetical protein
1271	 50.00	0	1229288..1229809	+	173	15837876	-	XF1275	-	poly(hydroxyalcanoate) granule associated protein
1272	 54.90	0	1229825..1229977	-	50	15837877	-	XF1276	-	hypothetical protein
1273	 53.23	0	1229990..1230190	+	66	15837878	-	XF1277	-	hypothetical protein
1274	 52.65	0	1230644..1231963	+	439	77747540	-	XF1278	-	hypothetical protein
1275	 33.96	-2	1232198..1232356	+	52	15837880	-	XF1279	-	hypothetical protein
1276	 53.45	0	1232685..1234046	-	453	15837881	-	XF1280	-	hypothetical protein
1277	 49.51	0	1234450..1234653	+	67	15837882	-	XF1281	-	hypothetical protein
1278	 55.16	0	1234773..1236284	-	503	15837883	-	XF1282	-	carboxypeptidase related protein
1279	 52.78	0	1236295..1236510	+	71	15837884	-	XF1283	-	hypothetical protein
1280	 49.69	0	1236503..1236661	+	52	15837885	-	XF1284	-	hypothetical protein
1281	 47.37	0	1236743..1236913	-	56	15837886	-	XF1285	-	hypothetical protein
1282	 52.80	0	1237020..1238909	-	629	15837887	-	XF1286	-	DNA topoisomerase IV subunit B
1283	 53.74	0	1238943..1239383	+	146	15837888	-	XF1287	-	hypothetical protein
1284	 53.51	0	1239543..1241207	+	554	15837889	-	XF1288	-	CTP synthetase
1285	 51.62	0	1241368..1242198	+	276	77747541	-	XF1289	-	2-dehydro-3-deoxyphosphooctonate aldolase
1286	 47.88	0	1242366..1242530	+	54	15837891	-	XF1290	-	hypothetical protein
1287	 51.59	0	1242553..1243938	+	461	15837892	eno	XF1291	-	phosphopyruvate hydratase
1288	 54.06	0	1243942..1244298	+	118	15837893	ftsB	XF1292	-	cell division protein FtsB
1289	 57.90	0	1244295..1244990	+	231	15837894	ispD	XF1293	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1290	 55.03	0	1245011..1245517	+	168	161378169	ispF	XF1294	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1291	 54.51	0	1245760..1246302	-	180	15837896	-	XF1295	-	hypothetical protein
1292	 49.18	0	1246578..1246760	+	60	15837897	-	XF1296	-	hypothetical protein
1293	 42.97	-1	1246783..1247799	-	338	15837898	-	XF1297	-	gluconolactonase precursor
1294	 53.67	0	1247959..1249605	-	548	15837899	-	XF1298	-	electron transfer flavoprotein ubiquinone oxidoreductase
1295	 53.73	0	1249695..1250297	+	200	15837900	-	XF1299	-	DNA repair system specific for alkylated DNA
1296	 53.58	0	1250492..1251133	-	213	15837901	-	XF1300	-	hypothetical protein
1297	 52.86	0	1251130..1252056	-	308	15837902	-	XF1301	-	hypothetical protein
1298	 53.66	0	1252060..1252920	-	286	15837903	-	XF1302	-	ABC transporter ATP-binding protein
1299	 53.23	0	1252896..1254086	-	396	15837904	-	XF1303	-	hypothetical protein
1300	 53.37	0	1254124..1255386	+	420	15837905	-	XF1304	-	hypothetical protein
1301	 43.38	-1	1255566..1255784	+	72	15837906	-	XF1305	-	hypothetical protein
1302	 39.30	-2	1255840..1256040	+	66	15837907	-	XF1306	-	hypothetical protein
1303	 35.02	-2	1256059..1256295	-	78	15837908	-	XF1307	-	hypothetical protein
1304	 47.22	0	1258417..1258704	+	95	15837909	-	XF1308	-	hypothetical protein
1305	 54.59	0	1258846..1259955	+	369	15837910	-	XF1309	-	rod shape-determining protein
1306	 53.84	0	1260153..1261103	+	316	15837911	-	XF1310	-	rod shape-determining protein
1307	 53.91	0	1261100..1261585	+	161	15837912	-	XF1311	-	rod shape-determining protein
1308	 54.20	0	1261569..1263653	+	694	15837913	-	XF1312	-	penicillin binding protein 2
1309	 50.80	0	1263650..1264771	+	373	15837914	-	XF1313	-	rod shape-determining protein
1310	 50.86	0	1264867..1265910	+	347	15837915	queA	XF1314	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1311	 44.63	-1	1266370..1266546	+	58	15837916	-	XF1315	-	hypothetical protein
1312	 54.24	0	1266639..1268795	+	718	15837917	-	XF1316	-	ATP:GTP 3'-pyrophosphotranferase
1313	 48.21	0	1268807..1269001	+	64	15837918	-	XF1317	-	hypothetical protein
1314	 57.34	0	1268973..1270376	+	467	15837919	-	XF1318	-	hypothetical protein
1315	 54.04	0	1270898..1271404	-	168	15837920	-	XF1319	-	hypothetical protein
1316	 48.84	0	1271464..1271721	-	85	15837921	minE	XF1320	-	cell division topological specificity factor MinE
1317	 53.09	0	1271724..1272533	-	269	15837922	-	XF1321	-	septum site-determining protein
1318	 53.84	0	1272570..1273286	-	238	15837923	minC	XF1322	-	septum formation inhibitor
1319	 52.85	0	1273302..1273880	-	192	77747542	-	XF1323	-	hypothetical protein
1320	 47.90	0	1274283..1275470	+	395	15837925	-	XF1324	-	hypothetical protein
1321	 50.68	0	1275598..1275816	+	72	15837926	-	XF1325	-	hypothetical protein
1322	 55.76	0	1275868..1276518	+	216	15837927	-	XF1326	-	DNA-3-methyladenine glycosidase
1323	 51.23	0	1276861..1277430	-	189	15837928	-	XF1327	-	hypothetical protein
1324	 54.67	0	1277448..1278014	-	188	15837929	-	XF1328	-	cytochrome B561
1325	 53.05	0	1278027..1278731	-	234	15837930	-	XF1329	-	hypothetical protein
1326	 56.20	0	1278851..1282444	+	1197	15837931	-	XF1330	-	hypothetical protein
1327	 54.90	0	1283039..1283140	-	33	15837932	-	XF1331	-	hypothetical protein
1328	 58.69	+1	1283186..1284250	-	354	15837933	hemE	XF1332	-	uroporphyrinogen decarboxylase
1329	 52.94	0	1284335..1284589	-	84	15837934	-	XF1333	-	hypothetical protein
1330	 58.99	+1	1284586..1285770	-	394	15837935	aroB	XF1334	-	3-dehydroquinate synthase
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.