IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1149	 47.08	0	1109702..1110334	+	210	15837754	rplC	XF1152	-	50S ribosomal protein L3
1150	 45.98	0	1110349..1110957	+	202	15837755	rplD	XF1153	-	50S ribosomal protein L4
1151	 41.03	-1	1110945..1111256	+	103	15837756	rplW	XF1154	-	50S ribosomal protein L23
1152	 46.50	0	1111268..1112095	+	275	15837757	rplB	XF1155	-	50S ribosomal protein L2
1153	 39.63	-2	1112103..1112372	+	89	15837758	rpsS	XF1156	-	30S ribosomal protein S19
1154	 45.24	-1	1112385..1112720	+	111	15837759	rplV	XF1157	-	50S ribosomal protein L22
1155	 44.86	-1	1112739..1113458	+	239	15837760	rpsC	XF1158	-	30S ribosomal protein S3
1156	 44.93	-1	1113464..1113877	+	137	15837761	rplP	XF1159	-	50S ribosomal protein L16
1157	 39.90	-1	1113877..1114074	+	65	15837762	rpmC	XF1160	-	50S ribosomal protein L29
1158	 38.52	-2	1114071..1114340	+	89	15837763	rpsQ	XF1161	-	30S ribosomal protein S17
1159	 44.44	-1	1114364..1114732	+	122	15837764	rplN	XF1162	-	50S ribosomal protein L14
1160	 40.88	-1	1114748..1115065	+	105	15837765	rplX	XF1163	-	50S ribosomal protein L24
1161	 40.93	-1	1115077..1115616	+	179	15837766	rplE	XF1164	-	50S ribosomal protein L5
1162	 43.79	-1	1115633..1115938	+	101	15837767	rpsN	XF1165	-	30S ribosomal protein S14
1163	 40.35	-1	1116097..1116495	+	132	15837768	rpsH	XF1166	-	30S ribosomal protein S8
1164	 43.37	-1	1116510..1117037	+	175	15837769	rplF	XF1167	-	50S ribosomal protein L6
1165	 47.22	0	1117125..1117484	+	119	161378170	rplR	XF1168	-	50S ribosomal protein L18
1166	 44.26	-1	1117660..1118199	+	179	15837771	rpsE	XF1169	-	30S ribosomal protein S5
1167	 45.06	-1	1118219..1118380	+	53	15837772	rpmD	XF1170	-	50S ribosomal protein L30
1168	 45.78	-1	1118381..1118830	+	149	15837773	rplO	XF1171	-	50S ribosomal protein L15
1169	 42.14	-1	1118840..1120213	+	457	15837774	secY	XF1172	-	preprotein translocase subunit SecY
1170	 45.66	-1	1120343..1120699	+	118	15837775	rpsM	XF1173	-	30S ribosomal protein S13
1171	 44.02	-1	1120715..1121107	+	130	15837776	-	XF1174	-	30S ribosomal protein S11
1172	 42.74	-1	1121122..1121748	+	208	15837777	rpsD	XF1175	-	30S ribosomal protein S4
1173	 44.54	-1	1121803..1122801	+	332	15837778	-	XF1176	-	DNA-directed RNA polymerase subunit alpha
1174	 44.88	-1	1122931..1123311	+	126	15837779	rplQ	XF1177	-	50S ribosomal protein L17
1175	 40.50	-1	1124306..1124626	+	106	15837780	-	XF1178	-	hypothetical protein
1176	 51.55	0	1124637..1126157	+	506	15837781	-	XF1179	-	competence related protein
1177	 51.52	0	1127354..1127485	+	43	15837782	-	XF1180	-	hypothetical protein
1178	 43.92	-1	1128679..1129812	+	377	15837783	-	XF1181	-	triacylglycerol lipase precursor
1179	 49.38	0	1129813..1130865	+	350	15837784	-	XF1182	-	lipase chaperone
1180	 51.54	0	1131441..1132742	+	433	15837785	-	XF1183	-	polysaccharide biosynthetic protein
1181	 48.57	0	1133510..1133614	-	34	15837786	-	XF1184	-	hypothetical protein
1182	 46.32	0	1133878..1134339	-	153	77747533	-	XF1185	-	hypothetical protein
1183	 49.54	0	1136247..1137542	+	431	15837788	tig	XF1186	-	trigger factor
1184	 47.53	0	1137677..1138303	+	208	15837789	clpP	XF1187	-	ATP-dependent Clp protease proteolytic subunit
1185	 46.84	0	1138431..1139711	+	426	15837790	clpX	XF1188	-	ATP-dependent protease ATP-binding subunit
1186	 48.57	0	1139789..1142335	+	848	15837791	-	XF1189	-	ATP-dependent serine proteinase La
1187	 49.12	0	1142556..1142840	+	94	15837792	-	XF1190	-	histone-like protein
1188	 49.95	0	1143435..1145402	+	655	15837793	-	XF1191	-	peptidyl-prolyl cis-trans isomerase
1189	 50.39	0	1146652..1147677	+	341	15837794	-	XF1192	-	integral membrane protein
1190	 48.61	0	1147719..1147862	-	47	15837795	-	XF1193	-	hypothetical protein
1191	 50.48	0	1147981..1148190	+	69	15837796	-	XF1194	-	hypothetical protein
1192	 48.10	0	1148363..1148572	+	69	15837797	-	XF1195	-	hypothetical protein
1193	 51.99	0	1148876..1151368	+	830	15837798	-	XF1196	-	ribonucleotide-diphosphate reductase subunit alpha
1194	 48.41	0	1151446..1152486	+	346	15837799	nrdF	XF1197	-	ribonucleotide-diphosphate reductase subunit beta
1195	 53.00	0	1152498..1152980	+	160	15837800	-	XF1198	-	flavodoxin
1196	 51.38	0	1152952..1153278	+	108	15837801	-	XF1199	-	thioredoxin
1197	 52.74	0	1153699..1154409	+	236	15837802	-	XF1200	-	ribosomal small subunit pseudouridine synthase
1198	 56.68	0	1154406..1155086	+	226	15837803	-	XF1201	-	phosphoglycolate phosphatase
1199	 46.01	0	1155269..1155481	+	70	15837804	-	XF1202	-	hypothetical protein
1200	 52.43	0	1155591..1155857	-	88	15837805	-	XF1203	-	hypothetical protein
1201	 51.25	0	1155937..1156494	-	185	15837806	-	XF1204	-	hypothetical protein
1202	 46.17	0	1156550..1156915	-	121	15837807	-	XF1205	-	hypothetical protein
1203	 53.16	0	1157086..1157322	+	78	15837808	rpmB	XF1206	-	50S ribosomal protein L28
1204	 43.64	-1	1157336..1157500	+	54	15837809	rpmG	XF1207	-	50S ribosomal protein L33
1205	 44.00	-1	1157501..1157650	+	49	15837810	-	XF1208	-	hypothetical protein
1206	 52.85	0	1157684..1159087	+	467	15837811	-	XF1209	-	cardiolipin synthase
1207	 50.81	0	1159459..1160076	+	205	15837812	-	XF1210	-	glutathione S-transferase
1208	 52.38	0	1160247..1161254	-	335	15837813	-	XF1211	-	malate dehydrogenase
1209	 50.30	0	1161368..1161862	-	164	15837814	-	XF1212	-	peptidyl-prolyl cis-trans isomerase
1210	 50.22	0	1162102..1163931	+	609	77747534	-	XF1213	-	GTP-binding elongation factor protein
1211	 53.26	0	1164161..1164436	+	91	15837816	-	XF1214	-	hypothetical protein
1212	 38.98	-2	1164701..1164877	+	58	15837817	-	XF1215	-	hypothetical protein
1213	 48.54	0	1165068..1166330	+	420	15837818	-	XF1216	-	colicin V secretion protein
1214	 41.57	-1	1166556..1166810	+	84	15837819	-	XF1217	-	hypothetical protein
1215	 38.33	-2	1166966..1167265	+	99	15837820	-	XF1218	-	hypothetical protein
1216	 36.67	-2	1167500..1167739	+	79	15837821	-	XF1219	-	hypothetical protein
1217	 48.40	0	1168402..1170525	+	707	15837822	-	XF1220	-	colicin V secretion ABC transporter ATP-binding protein
1218	 41.00	-1	1170671..1170970	+	99	15837823	-	XF1221	-	hypothetical protein
1219	 50.26	0	1171040..1171819	-	259	15837824	-	XF1222	-	hypothetical protein
1220	 50.70	0	1171899..1172831	-	310	15837825	-	XF1223	-	ABC transporter ATP-binding protein
1221	 53.45	0	1173720..1177373	+	1217	15837826	-	XF1224	-	PilY1 gene product
1222	 42.53	-1	1177411..1177584	+	57	15837827	-	XF1225	-	hypothetical protein
1223	 46.14	0	1177772..1178263	-	163	15837828	-	XF1226	-	hypothetical protein
1224	 41.36	-1	1178578..1178739	+	53	15837829	-	XF1227	-	hypothetical protein
1225	 53.59	0	1179173..1179562	-	129	15837830	-	XF1228	-	hypothetical protein
1226	 57.91	0	1179829..1182330	-	833	15837831	-	XF1229	-	ATP-dependent helicase
1227	 53.99	0	1182810..1183298	-	162	15837832	-	XF1230	-	hypothetical protein
1228	 53.88	0	1183591..1185444	+	617	15837833	-	XF1231	-	hypothetical protein
1229	 56.46	0	1185441..1189262	+	1273	77747535	-	XF1232	-	hypothetical protein
1230	 49.17	0	1189365..1189484	-	39	15837835	-	XF1233	-	hypothetical protein
1231	 55.85	0	1190039..1190935	+	298	15837836	prpB	XF1234	-	2-methylisocitrate lyase
1232	 53.85	0	1191830..1191985	+	51	15837837	-	XF1235	-	hypothetical protein
1233	 50.94	0	1192109..1192426	+	105	15837838	-	XF1236	-	hypothetical protein
1234	 51.38	0	1192742..1193068	+	108	15837839	-	XF1237	-	hypothetical protein
1235	 57.74	0	1193049..1193216	+	55	15837840	-	XF1238	-	hypothetical protein
1236	 52.94	0	1193439..1193846	+	135	15837841	-	XF1239	-	hypothetical protein
1237	 54.07	0	1193891..1194136	-	81	15837842	-	XF1240	-	hypothetical protein
1238	 56.73	0	1197439..1197609	+	56	15837843	-	XF1242	-	hypothetical protein
1239	 58.39	0	1197640..1198884	+	414	15837844	-	XF1243	-	hypothetical protein
1240	 47.50	0	1199255..1199494	-	79	15837845	-	XF1244	-	hypothetical protein
1241	 39.35	-2	1200166..1200564	-	132	15837846	-	XF1245	-	hypothetical protein
1242	 36.26	-2	1200787..1200957	-	56	15837847	-	XF1246	-	hypothetical protein
1243	 45.74	-1	1201116..1201373	-	85	15837848	-	XF1247	-	hypothetical protein
1244	 47.83	0	1201673..1202203	-	176	15837849	-	XF1248	-	hypothetical protein
1245	 43.89	-1	1202390..1202569	-	59	15837850	-	XF1249	-	hypothetical protein
1246	 46.37	0	1203098..1203979	+	293	15837851	-	XF1250	-	arginine deaminase
1247	 57.14	0	1204131..1204319	-	62	15837852	-	XF1251	-	hypothetical protein
1248	 57.51	0	1204474..1209399	+	1641	15837853	-	XF1252	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.