IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
63	 51.93	0	57328..58053	-	241	15836668	-	XF0063	-	competence protein F
64	 51.36	0	58103..59128	+	341	15836669	-	XF0064	-	biotin synthase
65	 44.12	-1	59182..59283	+	33	15836670	-	XF0065	-	hypothetical protein
66	 50.51	0	59387..60574	+	395	15836671	-	XF0066	-	hypothetical protein
67	 42.50	-1	61039..61278	+	79	15836672	-	XF0067	-	hypothetical protein
68	 52.99	0	61395..62396	-	333	15836673	ubiA	XF0068	-	4-hydroxybenzoate octaprenyltransferase
69	 46.31	0	62418..62810	-	130	15836674	-	XF0069	-	hypothetical protein
70	 45.91	-1	64213..64371	-	52	15836675	-	XF0070	-	hypothetical protein
71	 52.33	0	71808..72623	+	271	15836676	-	XF0071	-	formamidopyrimidine-DNA glycosylase
72	 47.11	0	72755..73603	-	282	15836677	-	XF0072	-	hypothetical protein
73	 48.81	0	73755..75059	+	434	15836678	-	XF0073	-	signal recognition particle protein
74	 46.94	0	75334..75627	+	97	15836679	-	XF0074	-	hypothetical protein
75	 55.22	0	75779..76582	+	267	15836680	-	XF0075	-	hypothetical protein
76	 40.48	-1	76738..76905	-	55	15836681	-	XF0076	-	hypothetical protein
77	 51.44	0	76892..77863	-	323	77747484	-	XF0077	-	fimbrial adhesin precursor
78	 50.97	0	78097..79077	-	326	77747485	-	XF0078	-	fimbrial adhesin precursor
79	 39.24	-2	79229..79465	+	78	15836684	-	XF0079	-	hypothetical protein
80	 49.95	0	79744..80706	-	320	15836685	-	XF0080	-	fimbrial adhesin precursor
81	 52.66	0	80781..83486	-	901	15836686	-	XF0081	-	outer membrane usher protein precursor
82	 49.31	0	83513..84313	-	266	15836687	-	XF0082	-	chaperone protein precursor
83	 52.25	0	84385..84939	-	184	15836688	-	XF0083	-	fimbrial subunit precursor
84	 37.50	-2	85353..85448	+	31	15836689	-	XF0084	-	hypothetical protein
85	 42.42	-1	85611..85775	+	54	15836690	-	XF0085	-	hypothetical protein
86	 53.37	0	86421..86909	-	162	15836691	-	XF0086	-	hypothetical protein
87	 51.68	0	86989..88296	-	435	15836692	-	XF0087	-	alpha-ketoglutarate permease symporter
88	 53.95	0	88345..89697	-	450	15836693	-	XF0088	-	GTP-binding protein
89	 46.95	0	89712..89990	-	92	15836694	hfq	XF0089	-	RNA-binding protein Hfq
90	 53.46	0	90094..91047	-	317	15836695	miaA	XF0090	-	tRNA delta(2)-isopentenylpyrophosphate transferase
91	 54.74	0	91047..91943	-	298	15836696	-	XF0091	-	dihydropteroate synthase
92	 48.79	0	92044..92250	+	68	15836697	-	XF0092	-	hypothetical protein
93	 50.88	0	92252..94189	-	645	15836698	-	XF0093	-	cell division protein
94	 49.38	0	94237..94878	-	213	15836699	-	XF0094	-	cell division protein
95	 48.37	0	94948..95253	+	101	15836700	-	XF0095	-	hypothetical protein
96	 54.86	0	95272..95652	+	126	15836701	-	XF0096	-	hypothetical protein
97	 42.42	-1	95805..95969	+	54	15836702	-	XF0097	-	hypothetical protein
98	 47.69	0	96040..96234	-	64	15836703	-	XF0098	-	hypothetical protein
99	 54.83	0	96231..98063	-	610	15836704	-	XF0099	-	dihydroxy-acid dehydratase
100	 56.64	0	98328..98726	-	132	15836705	-	XF0100	-	hypothetical protein
101	 59.09	+1	99079..99276	+	65	77747486	-	XF0101	-	hypothetical protein
102	 57.21	0	99277..100407	+	376	15836707	-	XF0102	-	hypothetical protein
103	 56.16	0	100388..101719	+	443	15836708	-	XF0103	-	membrane protein
104	 56.90	0	101904..102743	-	279	15836709	-	XF0104	-	lipid A biosynthesis lauroyl acyltransferase
105	 53.82	0	102867..104213	+	448	15836710	-	XF0105	-	3-deoxy-D-manno-octulosonic-acid transferase
106	 52.28	0	104597..105979	+	460	15836711	-	XF0106	-	hypothetical protein
107	 54.41	0	106195..106455	+	86	15836712	rpsP	XF0107	-	30S ribosomal protein S16
108	 51.66	0	106499..107011	+	170	15836713	rimM	XF0108	-	16S rRNA-processing protein
109	 53.31	0	107121..107906	+	261	15836714	trmD	XF0109	-	tRNA (guanine-N(1)-)-methyltransferase
110	 50.36	0	108071..108481	+	136	15836715	rplS	XF0110	-	50S ribosomal protein L19
111	 52.95	0	108906..109685	+	259	15836716	-	XF0111	-	methionine aminopeptidase
112	 52.31	0	109735..109929	+	64	15836717	-	XF0112	-	hypothetical protein
113	 48.81	0	110043..110210	+	55	15836718	-	XF0113	-	hypothetical protein
114	 54.08	0	110437..111270	+	277	161378154	dapD	XF0114	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
115	 48.27	0	111267..111641	+	124	15836720	-	XF0115	-	hypothetical protein
116	 57.41	0	111713..112846	+	377	15836721	-	XF0116	-	succinyl-diaminopimelate desuccinylase
117	 52.47	0	112932..113093	+	53	15836722	-	XF0117	-	hypothetical protein
118	 55.44	0	113246..114937	+	563	15836723	asnB	XF0118	-	asparagine synthetase B
119	 50.34	0	114995..116023	-	342	15836724	-	XF0119	-	hypothetical protein
120	 46.15	0	116775..116930	+	51	15836725	-	XF0120	-	hypothetical protein
121	 58.82	+1	117045..118076	+	343	15836726	-	XF0121	-	hypothetical protein
122	 51.79	0	118513..119184	+	223	15836727	-	XF0122	-	LexA repressor
123	 51.92	0	119366..120409	+	347	15836728	recA	XF0123	-	recombinase A
124	 52.82	0	120812..123562	+	916	15836729	alaS	XF0124	-	alanyl-tRNA synthetase
125	 48.15	0	123701..123916	+	71	161378179	-	XF0125	-	carbon storage regulator
126	 37.22	-2	124421..124600	+	59	15836731	-	XF0126	-	hypothetical protein
127	 56.84	0	125027..127051	-	674	15836732	-	XF0127	-	oligopeptidase A
128	 56.86	0	127111..128283	-	390	15836733	-	XF0128	-	cysteine synthase
129	 51.52	0	128287..128484	+	65	15836734	-	XF0129	-	hypothetical protein
130	 59.06	+1	128544..128714	-	56	15836735	-	XF0130	-	hypothetical protein
131	 59.52	+1	128737..129114	+	125	77747488	-	XF0131	-	hypothetical protein
132	 58.39	0	129202..131037	+	611	15836737	-	XF0132	-	copper resistance protein A precursor
133	 60.10	+1	131034..132008	+	324	15836738	-	XF0133	-	copper resistance protein B precursor
134	 59.50	+1	132265..135249	-	994	15836739	valS	XF0134	-	valyl-tRNA synthetase
135	 53.85	0	135299..135493	-	64	15836740	-	XF0135	-	hypothetical protein
136	 61.50	+1	135537..135962	-	141	15836741	-	XF0136	-	DNA polymerase III subunit chi
137	 44.02	-1	135962..136429	-	155	15836742	-	XF0137	-	hypothetical protein
138	 61.86	+1	136408..137883	-	491	15836743	-	XF0138	-	leucyl aminopeptidase
139	 56.35	0	137993..139078	+	361	15836744	-	XF0139	-	hypothetical protein
140	 53.39	0	139075..140181	+	368	15836745	-	XF0140	-	hypothetical protein
141	 54.04	0	141125..142954	+	609	15836746	-	XF0141	-	D-fructose-6-phosphate amidotransferase
142	 36.50	-2	143187..144386	+	399	15836747	-	XF0142	-	hypothetical protein
143	 52.68	0	144696..145553	-	285	15836748	-	XF0143	-	spermidine synthase
144	 54.11	0	145789..147675	+	628	15836749	-	XF0144	-	arginine decarboxylase
145	 57.28	0	147702..148457	-	251	15836750	-	XF0145	-	oxidoreductase
146	 54.75	0	148592..149338	-	248	77747489	-	XF0146	-	hypothetical protein
147	 53.66	0	149378..151138	-	586	15836752	argS	XF0147	-	arginyl-tRNA synthetase
148	 57.08	0	151195..151893	-	232	15836753	radC	XF0148	-	DNA repair protein RadC
149	 55.85	0	151968..153197	+	409	15836754	-	XF0149	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
150	 54.06	0	153194..153661	+	155	15836755	dut	XF0150	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
151	 51.90	0	154644..156038	+	464	77747490	-	XF0151	-	phosphomannomutase
152	 51.66	0	156052..156624	-	190	15836757	-	XF0152	-	hypothetical protein
153	 54.09	0	156755..157414	-	219	15836758	pyrE	XF0153	-	orotate phosphoribosyltransferase
154	 44.23	-1	157666..158133	-	155	15836759	-	XF0154	-	hypothetical protein
155	 34.23	-2	158177..159064	+	295	15836760	-	XF0155	-	hypothetical protein
156	 42.28	-1	159327..160142	-	271	15836761	-	XF0156	-	cysteine protease
157	 48.44	0	160688..160879	-	63	15836762	-	XF0157	-	hypothetical protein
158	 44.65	-1	161214..161372	+	52	15836763	-	XF0158	-	hypothetical protein
159	 43.02	-1	161369..161719	+	116	15836764	-	XF0159	-	hypothetical protein
160	 43.96	-1	161774..162328	+	184	15836765	-	XF0160	-	hypothetical protein
161	 44.56	-1	162520..164328	+	602	15836766	-	XF0161	-	hypothetical protein
162	 41.48	-1	164426..164560	-	44	15836767	-	XF0162	-	hypothetical protein
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.