IslandPath Analysis: Xylella fastidiosa 9a5c



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 52.19   STD DEV: 6.22
Xylella fastidiosa 9a5c, complete genome - 1..2679306
2766 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1051	 53.36	0	1014069..1014767	+	232	15837656	-	XF1054	-	hypothetical protein
1052	 46.42	0	1014879..1015199	+	106	15837657	-	XF1055	-	hypothetical protein
1053	 46.91	0	1015455..1015778	-	107	15837658	-	XF1056	-	hypothetical protein
1054	 47.52	0	1016078..1016380	+	100	15837659	-	XF1057	-	hypothetical protein
1055	 52.02	0	1016409..1017152	-	247	15837660	pyrH	XF1058	-	uridylate kinase
1056	 47.80	0	1017134..1017292	+	52	15837661	-	XF1059	-	hypothetical protein
1057	 52.63	0	1017524..1017751	-	75	15837662	-	XF1060	-	hypothetical protein
1058	 56.52	0	1018527..1019186	-	219	15837663	-	XF1061	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
1059	 60.70	+1	1019284..1021176	-	630	15837664	-	XF1062	-	phosphogluconate dehydratase
1060	 58.33	0	1021316..1022035	-	239	15837665	-	XF1063	-	6-phosphogluconolactonase
1061	 58.09	0	1022032..1023045	-	337	15837666	glk	XF1064	-	glucokinase
1062	 56.90	0	1023042..1024475	-	477	15837667	-	XF1065	-	glucose-6-phosphate 1-dehydrogenase
1063	 53.57	0	1024499..1024666	-	55	15837668	-	XF1066	-	hypothetical protein
1064	 54.34	0	1024805..1025899	+	364	15837669	-	XF1067	-	sugar ABC transporter ATP-binding protein
1065	 55.66	0	1026044..1026961	-	305	15837670	-	XF1068	-	hypothetical protein
1066	 48.40	0	1027157..1027375	+	72	15837671	-	XF1069	-	hypothetical protein
1067	 53.38	0	1027400..1027828	+	142	15837672	-	XF1070	-	succinate dehydrogenase, membrane anchor subunit
1068	 52.34	0	1027825..1028208	+	127	15837673	-	XF1071	-	succinate dehydrogenase, membrane anchor subunit
1069	 52.76	0	1028216..1030006	+	596	15837674	sdhA	XF1072	-	succinate dehydrogenase flavoprotein subunit
1070	 50.76	0	1030027..1030812	+	261	15837675	sdhB	XF1073	-	succinate dehydrogenase iron-sulfur subunit
1071	 54.08	0	1030888..1031181	+	97	15837676	-	XF1074	-	hypothetical protein
1072	 54.95	0	1031201..1031584	+	127	15837677	-	XF1075	-	hypothetical protein
1073	 53.54	0	1031610..1032851	+	413	15837678	-	XF1076	-	hypothetical protein
1074	 53.51	0	1032883..1033566	+	227	15837679	-	XF1077	-	ABC transporter ATP-binding protein
1075	 56.79	0	1033882..1036392	+	836	15837680	-	XF1078	-	DNA uptake protein
1076	 50.83	0	1036377..1037039	+	220	15837681	-	XF1079	-	hypothetical protein
1077	 50.91	0	1037044..1037481	+	145	15837682	-	XF1080	-	hypothetical protein
1078	 53.33	0	1037478..1039247	+	589	15837683	-	XF1081	-	ABC transporter ATP-binding protein
1079	 55.20	0	1039244..1040263	+	339	15837684	lpxK	XF1082	-	tetraacyldisaccharide 4'-kinase
1080	 48.59	0	1040487..1040663	-	58	15837685	-	XF1083	-	hypothetical protein
1081	 55.76	0	1040909..1041550	+	213	15837686	-	XF1084	-	partition protein
1082	 56.04	0	1041567..1042046	+	159	15837687	-	XF1085	-	hypothetical protein
1083	 52.53	0	1042066..1042638	+	190	15837688	-	XF1086	-	hypothetical protein
1084	 50.94	0	1042635..1044593	+	652	15837689	-	XF1087	-	cardiolipin synthase
1085	 28.57	-2	1044771..1044980	-	69	15837690	-	XF1088	-	hypothetical protein
1086	 41.36	-1	1045293..1045454	-	53	15837691	-	XF1089	-	hypothetical protein
1087	 46.47	0	1045600..1046010	-	136	15837692	-	XF1090	-	hypothetical protein
1088	 50.95	0	1046397..1046765	-	122	15837693	-	XF1091	-	hypothetical protein
1089	 52.94	0	1046845..1047048	-	67	15837694	-	XF1092	-	hypothetical protein
1090	 49.18	0	1047305..1047790	-	161	15837695	-	XF1093	-	hypothetical protein
1091	 58.00	0	1048033..1048632	-	199	15837696	-	XF1094	-	tryptophan repressor binding protein
1092	 43.40	-1	1048846..1049004	+	52	15837697	-	XF1095	-	hypothetical protein
1093	 53.59	0	1049034..1049186	+	50	15837698	-	XF1096	-	hypothetical protein
1094	 50.80	0	1049206..1050390	+	394	15837699	-	XF1097	-	nicotinate phosphoribosyltransferase
1095	 39.17	-2	1050443..1050562	+	39	15837700	-	XF1098	-	hypothetical protein
1096	 55.90	0	1050579..1051154	-	191	15837701	-	XF1099	-	hypothetical protein
1097	 40.09	-1	1051550..1051771	+	73	15837702	-	XF1100	-	hypothetical protein
1098	 42.77	-1	1052097..1052255	+	52	15837703	-	XF1101	-	hypothetical protein
1099	 48.98	0	1052533..1052826	-	97	15837704	-	XF1102	-	hypothetical protein
1100	 53.61	0	1052911..1055682	+	923	15837705	-	XF1103	-	DNA polymerase I
1101	 46.84	0	1056007..1056354	-	115	15837706	-	XF1104	-	hypothetical protein
1102	 58.26	0	1056325..1057038	+	237	15837707	-	XF1105	-	dihydrodipicolinate reductase
1103	 53.78	0	1057236..1058360	+	374	161378171	-	XF1106	-	carbamoyl phosphate synthase small subunit
1104	 54.58	0	1058561..1061803	+	1080	15837709	carB	XF1107	-	carbamoyl phosphate synthase large subunit
1105	 51.40	0	1061812..1062276	+	154	15837710	greA	XF1108	-	transcription elongation factor GreA
1106	 57.26	0	1062323..1063204	+	293	15837711	-	XF1109	-	hypothetical protein
1107	 55.44	0	1063270..1065015	+	581	15837712	-	XF1110	-	single-stranded DNA exonuclease
1108	 54.28	0	1065781..1066797	+	338	15837713	-	XF1111	-	peptide chain release factor 2
1109	 53.06	0	1066981..1068501	+	506	15837714	lysS	XF1112	-	lysyl-tRNA synthetase
1110	 52.97	0	1068633..1069793	+	386	15837715	-	XF1113	-	two-component system, regulatory protein
1111	 52.69	0	1069942..1071930	+	662	15837716	-	XF1114	-	regulator of pathogenicity factors
1112	 49.03	0	1071953..1072825	-	290	15837717	-	XF1115	-	enoyl-CoA hydratase
1113	 55.27	0	1073106..1075712	+	868	15837718	-	XF1116	-	bifunctional aspartate kinase/diaminopimelate decarboxylase protein
1114	 55.23	0	1075713..1077164	+	483	15837719	-	XF1117	-	hypothetical protein
1115	 59.99	+1	1077145..1078551	+	468	15837720	murD	XF1118	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
1116	 45.74	-1	1079129..1079515	-	128	15837721	-	XF1119	-	hypothetical protein
1117	 59.71	+1	1079557..1080519	+	320	15837722	-	XF1120	-	hypothetical protein
1118	 56.76	0	1080582..1081409	-	275	15837723	-	XF1121	-	5,10-methylenetetrahydrofolate reductase
1119	 39.01	-2	1081691..1081831	+	46	15837724	-	XF1122	-	hypothetical protein
1120	 51.71	0	1081900..1082628	-	242	15837725	-	XF1123	-	outer membrane protein
1121	 56.50	0	1082717..1083316	+	199	15837726	maf	XF1124	-	Maf-like protein
1122	 52.21	0	1083317..1084810	+	497	15837727	-	XF1125	-	ribonuclease G
1123	 56.33	0	1084958..1088797	+	1279	77747532	-	XF1126	-	hypothetical protein
1124	 57.20	0	1088909..1090366	+	485	15837729	-	XF1127	-	TldD protein
1125	 46.67	0	1090385..1090504	+	39	15837730	-	XF1128	-	hypothetical protein
1126	 47.88	0	1090551..1090715	+	54	15837731	-	XF1129	-	hypothetical protein
1127	 52.87	0	1090815..1091372	-	185	15837732	-	XF1130	-	hypothetical protein
1128	 54.70	0	1091513..1092799	+	428	15837733	-	XF1131	-	PmbA protein
1129	 55.85	0	1092886..1093791	-	301	15837734	-	XF1132	-	LysR family transcriptional regulator
1130	 53.51	0	1094006..1094575	+	189	15837735	-	XF1133	-	tryptophan repressor binding protein
1131	 48.02	0	1094602..1094778	+	58	15837736	-	XF1134	-	hypothetical protein
1132	 52.94	0	1094756..1094908	+	50	15837737	-	XF1135	-	hypothetical protein
1133	 54.30	0	1094994..1096052	+	352	15837738	-	XF1136	-	NADP-alcohol dehydrogenase
1134	 53.48	0	1096057..1096746	+	229	15837739	-	XF1137	-	NonF-related protein
1135	 41.10	-1	1097210..1097428	+	72	15837740	-	XF1138	-	hypothetical protein
1136	 49.33	0	1097518..1097817	-	99	15837741	-	XF1139	-	hypothetical protein
1137	 54.44	0	1098222..1099595	-	457	15837742	-	XF1140	-	UDP-N-acetylglucosamine pyrophosphorylase
1138	 51.04	0	1099975..1100550	-	191	15837743	-	XF1141	-	chorismate mutase
1139	 50.69	0	1100797..1101228	-	143	15837744	atpC	XF1142	-	F0F1 ATP synthase subunit epsilon
1140	 50.11	0	1101298..1102698	-	466	15837745	-	XF1143	-	F0F1 ATP synthase subunit beta
1141	 48.61	0	1102781..1103644	-	287	15837746	-	XF1144	-	F0F1 ATP synthase subunit gamma
1142	 50.71	0	1103738..1105285	-	515	15837747	-	XF1145	-	F0F1 ATP synthase subunit alpha
1143	 50.00	0	1105335..1105862	-	175	15837748	-	XF1146	-	F0F1 ATP synthase subunit delta
1144	 44.16	-1	1105866..1106336	-	156	15837749	-	XF1147	-	F0F1 ATP synthase subunit B
1145	 52.29	0	1106457..1106762	-	101	15837750	-	XF1148	-	F0F1 ATP synthase subunit C
1146	 46.37	0	1106826..1107623	-	265	15837751	-	XF1149	-	F0F1 ATP synthase subunit A
1147	 45.70	-1	1107653..1108024	-	123	15837752	-	XF1150	-	hypothetical protein
1148	 47.12	0	1109361..1109672	+	103	15837753	rpsJ	XF1151	-	30S ribosomal protein S10
1149	 47.08	0	1109702..1110334	+	210	15837754	rplC	XF1152	-	50S ribosomal protein L3
1150	 45.98	0	1110349..1110957	+	202	15837755	rplD	XF1153	-	50S ribosomal protein L4
52.19	MEAN

6.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.