IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
945	 62.93	0	1088991..1089311	+	106	58580688	-	XOO1065	-	hypothetical protein
946	 66.84	0	1089409..1090002	+	197	58580689	recR	XOO1066	-	recombination protein RecR
947	 60.75	0	1089999..1090454	+	151	58580690	-	XOO1067	-	histidine triad protein homolog (HIT-like protein)
948	 66.10	0	1090574..1091107	-	177	58580691	slp	XOO1068	-	outer membrane protein Slp
949	 66.77	0	1091104..1093056	-	650	58580692	-	XOO1069	-	hypothetical protein
950	 67.61	+1	1093049..1094005	-	318	58580693	-	XOO1070	-	hypothetical protein
951	 65.61	0	1094011..1095051	-	346	58580694	moxR	XOO1071	-	methanol dehydrogenase regulator
952	 65.60	0	1094991..1096871	+	626	58580695	-	XOO1072	-	hypothetical protein
953	 64.18	0	1097865..1098065	+	66	58580697	arsC	XOO1074	-	arsenate reductase
954	 59.00	-1	1098264..1098902	+	212	58580698	def	XOO1075	-	peptide deformylase
955	 61.79	0	1099419..1100177	+	252	58580699	celS	XOO1076	-	cellulase S
956	 59.22	-1	1100605..1101396	+	263	122879067	-	XOO1077	-	cellulase S
957	 62.50	0	1102013..1103716	-	567	58580701	rhgB	XOO1078	-	rhamnogalacturonase B
958	 61.83	0	1103975..1104160	-	61	58580702	-	XOO1079	-	hypothetical protein
959	 59.85	-1	1104170..1104301	-	43	58580703	-	XOO1080	-	hypothetical protein
960	 55.07	-2	1105876..1106556	-	226	58580707	-	XOO1084	-	hypothetical protein
961	 59.95	-1	1106667..1107098	-	143	58580708	-	XOO1085	-	putative transposase
962	 61.96	0	1107111..1107641	-	176	58580709	-	XOO1086	-	putative transposase
963	 54.63	-2	1107693..1108124	-	143	58580710	-	XOO1087	-	hypothetical protein
964	 62.50	0	1108430..1109605	+	391	58580711	-	XOO1088	-	putative ISXo8 transposase
965	 58.68	-1	1109574..1109861	+	95	58580712	-	XOO1089	-	putative ISXo8 transposase
966	 66.24	0	1110572..1111498	-	308	58580713	-	XOO1090	-	glutaredoxin-like protein
967	 69.76	+1	1111559..1112335	+	258	122879068	nodB	XOO1091	-	acetylxylan esterase
968	 65.52	0	1112637..1113332	-	231	58580715	-	XOO1092	-	hypothetical protein
969	 64.95	0	1113631..1114272	-	213	58580716	-	XOO1093	-	hypothetical protein
970	 65.41	0	1114269..1115540	-	423	122879069	aspC	XOO1094	-	aminotransferase AlaT
971	 67.22	0	1115694..1116785	+	363	58580718	-	XOO1095	-	ribosome-associated GTPase
972	 65.24	0	1116785..1118047	+	420	58580719	-	XOO1096	-	hypothetical protein
973	 62.86	0	1118119..1118880	+	253	58580720	nonF	XOO1097	-	NonF-related protein
974	 63.99	0	1119047..1121065	-	672	58580721	-	XOO1098	-	amylosucrase or alpha amylase
975	 63.68	0	1120998..1123304	-	768	58580722	fyuA	XOO1099	-	TonB-dependent receptor
976	 63.69	0	1123565..1125043	+	492	58580723	suc1	XOO1100	-	sugar transporter
977	 65.77	0	1125284..1126504	-	406	58580724	cebR	XOO1101	-	transcriptional regulator
978	 62.45	0	1126556..1127362	-	268	58580725	fabG	XOO1102	-	3-ketoacyl-(acyl-carrier-protein) reductase
979	 62.68	0	1127408..1128736	-	442	122879070	citM	XOO1103	-	Mg++/citrate complex transporter
980	 60.87	0	1128964..1130205	-	413	58580727	oprO	XOO1104	-	porin O
981	 63.53	0	1130221..1131114	+	297	58580728	tctD	XOO1105	-	two-component system regulatory protein
982	 65.63	0	1131050..1132492	+	480	58580729	tctE	XOO1106	-	two-component system sensor protein
983	 66.51	0	1133582..1134220	+	212	58580732	-	XOO1109	-	LuxR/UhpA family transcriptional regulator
984	 66.41	0	1134351..1134734	-	127	121632050	-	XOO4740	-	hypothetical protein
985	 68.42	+1	1134421..1135275	-	284	58580733	-	XOO1110	-	hypothetical protein
986	 66.67	0	1135272..1136090	-	272	58580734	mocA	XOO1111	-	rhizopine catabolism protein mocA
987	 62.57	0	1136219..1137121	+	300	58580735	ybhD	XOO1112	-	transcriptional regulator
988	 65.79	0	1136800..1137027	-	75	121632051	-	XOO4741	-	hypothetical protein
989	 64.36	0	1137113..1137892	-	259	58580736	-	XOO1113	-	hypothetical protein
990	 60.69	0	1137889..1139328	-	479	58580737	cit1	XOO1114	-	citrate carrier protein
991	 67.12	0	1139554..1142199	-	881	58580738	-	XOO1115	-	sensor histidine kinase
992	 64.31	0	1142521..1143792	-	423	58580739	oprO	XOO1116	-	polyphosphate-selective porin O
993	 63.72	0	1143933..1145357	+	474	58580740	dctA	XOO1117	-	C4-dicarboxylate transporter DctA
994	 65.28	0	1145555..1147864	+	769	122879071	maeB	XOO1118	-	malic enzyme
995	 63.42	0	1148709..1149695	+	328	58580742	-	XOO1119	-	IS1404 transposase
996	 64.71	0	1149875..1150843	+	322	58580744	-	XOO1121	-	hypothetical protein
997	 63.75	0	1150795..1151034	-	79	121632052	-	XOO4742	-	putative transposase
998	 67.71	+1	1151125..1151796	-	223	58580746	thiE	XOO1123	-	thiamine-phosphate pyrophosphorylase
999	 60.83	0	1151772..1152011	+	79	58580747	rubA	XOO1124	-	rubredoxin
1000	 64.97	0	1152061..1152942	-	293	58580748	-	XOO1125	-	hypothetical protein
1001	 64.60	0	1153092..1153574	-	160	58580749	-	XOO1126	-	hypothetical protein
1002	 65.43	0	1153692..1154339	-	215	122879072	rpiA	XOO1127	-	ribose-5-phosphate isomerase A
1003	 60.72	0	1154431..1154901	-	156	58580751	-	XOO1128	-	hypothetical protein
1004	 66.51	0	1154898..1155518	-	206	58580752	-	XOO1129	-	hypothetical protein
1005	 62.00	0	1156097..1156396	-	99	58580753	-	XOO1130	-	hypothetical protein
1006	 66.30	0	1156393..1156662	-	89	58580754	-	XOO1131	-	hypothetical protein
1007	 67.55	+1	1156826..1157392	+	188	58580755	-	XOO1132	-	hypothetical protein
1008	 65.85	0	1157403..1158743	+	446	58580756	pepP	XOO1133	-	aminopeptidase P
1009	 54.81	-2	1159795..1160241	-	148	58580759	-	XOO1136	-	transposase
1010	 64.03	0	1160447..1161772	-	441	122879073	pepQ	XOO1137	-	proline dipeptidase
1011	 68.10	+1	1161971..1162318	-	115	58580761	-	XOO1138	-	hypothetical protein
1012	 66.96	0	1162315..1164723	-	802	58580762	-	XOO1139	-	hypothetical protein
1013	 62.69	0	1164902..1166059	-	385	58580763	-	XOO1140	-	coproporphyrinogen III oxidase
1014	 64.83	0	1166075..1166674	-	199	58580764	-	XOO1141	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1015	 64.90	0	1166671..1167066	-	131	58580765	-	XOO1142	-	hypothetical protein
1016	 67.22	0	1167063..1167788	-	241	161899009	rph	XOO1143	-	ribonuclease PH
1017	 66.20	0	1167898..1168758	+	286	58580767	-	XOO1144	-	hypothetical protein
1018	 66.34	0	1168875..1169486	+	203	58580768	gmk	XOO1145	-	guanylate kinase
1019	 57.80	-1	1169652..1170023	+	123	58580769	-	XOO1146	-	putative transposase
1020	 59.12	-1	1169989..1170465	+	158	58580770	-	XOO1147	-	putative transposase
1021	 63.66	0	1170580..1170912	+	110	58580771	rpoZ	XOO1148	-	DNA-directed RNA polymerase subunit omega
1022	 63.58	0	1171041..1173212	+	723	58580772	spoT	XOO1149	-	pentaphosphate guanosine-3'-pyrophosphohydrolase
1023	 64.57	0	1173292..1173672	+	126	58580773	yjgF	XOO1150	-	translation initiation inhibitor
1024	 66.11	0	1173693..1175846	+	717	58580774	recG	XOO1151	-	ATP-dependent DNA helicase
1025	 66.99	0	1175972..1176910	+	312	58580775	-	XOO1152	-	inosine-uridine preferring nucleoside hydrolase
1026	 54.73	-2	1176982..1177224	+	80	161899008	rpmE2	XOO1153	-	50S ribosomal protein L31 type B
1027	 60.95	0	1177399..1178727	+	442	58580777	gltA	XOO1154	-	type II citrate synthase
1028	 67.14	0	1179104..1179523	-	139