IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
932	 62.37	0	1078023..1078580	+	185	58580675	-	XOO1052	-	hypothetical protein
933	 63.30	0	1078682..1079632	+	316	58580676	-	XOO1053	-	transposase
934	 60.85	0	1079731..1080486	-	251	58580677	-	XOO1054	-	integrase
935	 61.23	0	1080528..1080932	+	134	58580678	-	XOO1055	-	hypothetical protein
936	 67.24	0	1081143..1082192	-	349	58580679	opsX	XOO1056	-	saccharide biosynthesis regulatory protein
937	 65.60	0	1082213..1082962	+	249	58580680	-	XOO1057	-	3-deoxy-D-manno-octulosonic-acid kinase
938	 66.27	0	1082962..1083711	+	249	58580681	-	XOO1058	-	hypothetical protein
939	 65.50	0	1083711..1084742	+	343	58580682	moaA	XOO1059	-	molybdenum cofactor biosynthesis protein A
940	 63.33	0	1084760..1085119	+	119	58580683	-	XOO1060	-	hypothetical protein
941	 63.98	0	1085120..1085641	+	173	58580684	moaC	XOO1061	-	molybdenum cofactor biosynthesis protein C
942	 66.26	0	1085638..1085883	+	81	58580685	moaD	XOO1062	-	molybdopterin-converting factor chain 1
943	 64.65	0	1085880..1086326	+	148	58580686	moaE	XOO1063	-	molybdopterin-converting factor chain 2
944	 66.67	0	1086888..1088984	+	698	58580687	dnaX	XOO1064	-	DNA polymerase III subunits gamma and tau
945	 62.93	0	1088991..1089311	+	106	58580688	-	XOO1065	-	hypothetical protein
946	 66.84	0	1089409..1090002	+	197	58580689	recR	XOO1066	-	recombination protein RecR
947	 60.75	0	1089999..1090454	+	151	58580690	-	XOO1067	-	histidine triad protein homolog (HIT-like protein)
948	 66.10	0	1090574..1091107	-	177	58580691	slp	XOO1068	-	outer membrane protein Slp
949	 66.77	0	1091104..1093056	-	650	58580692	-	XOO1069	-	hypothetical protein
950	 67.61	+1	1093049..1094005	-	318	58580693	-	XOO1070	-	hypothetical protein
951	 65.61	0	1094011..1095051	-	346	58580694	moxR	XOO1071	-	methanol dehydrogenase regulator
952	 65.60	0	1094991..1096871	+	626	58580695	-	XOO1072	-	hypothetical protein
953	 64.18	0	1097865..1098065	+	66	58580697	arsC	XOO1074	-	arsenate reductase
954	 59.00	-1	1098264..1098902	+	212	58580698	def	XOO1075	-	peptide deformylase
955	 61.79	0	1099419..1100177	+	252	58580699	celS	XOO1076	-	cellulase S
956	 59.22	-1	1100605..1101396	+	263	122879067	-	XOO1077	-	cellulase S
957	 62.50	0	1102013..1103716	-	567	58580701	rhgB	XOO1078	-	rhamnogalacturonase B
958	 61.83	0	1103975..1104160	-	61	58580702	-	XOO1079	-	hypothetical protein
959	 59.85	-1	1104170..1104301	-	43	58580703	-	XOO1080	-	hypothetical protein
960	 55.07	-2	1105876..1106556	-	226	58580707	-	XOO1084	-	hypothetical protein
961	 59.95	-1	1106667..1107098	-	143	58580708	-	XOO1085	-	putative transposase
962	 61.96	0	1107111..1107641	-	176	58580709	-	XOO1086	-	putative transposase
963	 54.63	-2	1107693..1108124	-	143	58580710	-	XOO1087	-	hypothetical protein
964	 62.50	0	1108430..1109605	+	391	58580711	-	XOO1088	-	putative ISXo8 transposase
965	 58.68	-1	1109574..1109861	+	95	58580712	-	XOO1089	-	putative ISXo8 transposase
966	 66.24	0	1110572..1111498	-	308	58580713	-	XOO1090	-	glutaredoxin-like protein
967	 69.76	+1	1111559..1112335	+	258	122879068	nodB	XOO1091	-	acetylxylan esterase
968	 65.52	0	1112637..1113332	-	231	58580715	-	XOO1092	-	hypothetical protein
969	 64.95	0	1113631..1114272	-	213	58580716	-	XOO1093	-	hypothetical protein
970	 65.41	0	1114269..1115540	-	423	122879069	aspC	XOO1094	-	aminotransferase AlaT
971	 67.22	0	1115694..1116785	+	363	58580718	-	XOO1095	-	ribosome-associated GTPase
972	 65.24	0	1116785..1118047	+	420	58580719	-	XOO1096	-	hypothetical protein
973	 62.86	0	1118119..1118880	+	253	58580720	nonF	XOO1097	-	NonF-related protein
974	 63.99	0	1119047..1121065	-	672	58580721	-	XOO1098	-	amylosucrase or alpha amylase
975	 63.68	0	1120998..1123304	-	768	58580722	fyuA	XOO1099	-	TonB-dependent receptor
976	 63.69	0	1123565..1125043	+	492	58580723	suc1	XOO1100	-	sugar transporter
977	 65.77	0	1125284..1126504	-	406	58580724	cebR	XOO1101	-	transcriptional regulator
978	 62.45	0	1126556..1127362	-	268	58580725	fabG	XOO1102	-	3-ketoacyl-(acyl-carrier-protein) reductase
979	 62.68	0	1127408..1128736	-	442	122879070	citM	XOO1103	-	Mg++/citrate complex transporter
980	 60.87	0	1128964..1130205	-	413	58580727	oprO	XOO1104	-	porin O
981	 63.53	0	1130221..1131114	+	297	58580728	tctD	XOO1105	-	two-component system regulatory protein
982	 65.63	0	1131050..1132492	+	480	58580729	tctE	XOO1106	-	two-component system sensor protein
983	 66.51	0	1133582..1134220	+	212	58580732	-	XOO1109	-	LuxR/UhpA family transcriptional regulator
984	 66.41	0	1134351..1134734	-	127	121632050	-	XOO4740	-	hypothetical protein
985	 68.42	+1	1134421..1135275	-	284	58580733	-	XOO1110	-	hypothetical protein
986	 66.67	0	1135272..1136090	-	272	58580734	mocA	XOO1111	-	rhizopine catabolism protein mocA
987	 62.57	0	1136219..1137121	+	300	58580735	ybhD	XOO1112	-	transcriptional regulator
988	 65.79	0	1136800..1137027	-	75	121632051	-	XOO4741	-	hypothetical protein
989	 64.36	0	1137113..1137892	-	259	58580736	-	XOO1113	-	hypothetical protein
990	 60.69	0	1137889..1139328	-	479	58580737	cit1	XOO1114	-	citrate carrier protein
991	 67.12	0	1139554..1142199	-	881	58580738	-	XOO1115	-	sensor histidine kinase
992	 64.31	0	1142521..1143792	-	423	58580739	oprO	XOO1116	-	polyphosphate-selective porin O
993	 63.72	0	1143933..1145357	+	474	58580740	dctA	XOO1117	-	C4-dicarboxylate transporter DctA
994	 65.28	0	1145555..1147864	+	769	122879071	maeB	XOO1118	-	malic enzyme
995	 63.42	0	1148709..1149695	+	328	58580742	-	XOO1119	-	IS1404 transposase
996	 64.71	0	1149875..1150843	+	322	58580744	-	XOO1121	-	hypothetical protein
997	 63.75	0	1150795..1151034	-	79	121632052	-	XOO4742	-	putative transposase
998	 67.71	+1	1151125..1151796	-	223	58580746	thiE	XOO1123	-	thiamine-phosphate pyrophosphorylase
999	 60.83	0	1151772..1152011	+	79	58580747	rubA	XOO1124	-	rubredoxin
1000	 64.97	0	1152061..1152942	-	293	58580748	-	XOO1125	-	hypothetical protein
1001	 64.60	0	1153092..1153574	-	160	58580749	-	XOO1126	-	hypothetical protein
1002	 65.43	0	1153692..1154339	-	215	122879072	rpiA	XOO1127	-	ribose-5-phosphate isomerase A
1003	 60.72	0	1154431..1154901	-	156	58580751	-	XOO1128	-	hypothetical protein
1004	 66.51	0	1154898..1155518	-	206	58580752	-	XOO1129	-	hypothetical protein
1005	 62.00	0	1156097..1156396	-	99	58580753	-	XOO1130	-	hypothetical protein
1006	 66.30	0	1156393..1156662	-	89	58580754	-	XOO1131	-	hypothetical protein
1007	 67.55	+1	1156826..1157392	+	188	58580755	-	XOO1132	-	hypothetical protein
1008	 65.85	0	1157403..1158743	+	446	58580756	pepP	XOO1133	-	aminopeptidase P
1009	 54.81	-2	1159795..1160241	-	148	58580759	-	XOO1136	-	transposase
1010	 64.03	0	1160447..1161772	-	441	122879073	pepQ	XOO1137	-	proline dipeptidase
1011	 68.10	+1	1161971..1162318	-	115	58580761	-	XOO1138	-	hypothetical protein
1012	 66.96	0	1162315..1164723	-	802	58580762	-	XOO1139	-	hypothetical protein
1013	 62.69	0	1164902..1166059	-	385	58580763	-	XOO1140	-	coproporphyrinogen III oxidase
1014	 64.83	0	1166075..1166674	-	199	58580764	-	XOO1141	-	putative deoxyribonucleotide triphosphate pyrophosphatase
1015	 64.90	0	1166671..1167066	-	131	58580765	-	XOO1142	-	hypothetical protein
1016	 67.22	0	1167063..1167788	-	241	161899009	rph	XOO1143	-	ribonuclease PH
1017	 66.20	0	1167898..1168758	+	286	58580767	-	XOO1144	-	hypothetical protein
1018	 66.34	0	1168875..1169486	+	203	58580768	gmk	XOO1145	-	guanylate kinase
1019	 57.80	-1	1169652..1170023	+	123	58580769	-	XOO1146	-	putative transposase
1020	 59.12	-1	1169989..1170465	+	158	58580770	-	XOO1147	-	putative transposase
1021	 63.66	0	1170580..1170912	+	110	58580771	rpoZ	XOO1148	-	DNA-directed RNA polymerase subunit omega
1022	 63.58	0	1171041..1173212	+	723	58580772	spoT	XOO1149	-	pentaphosphate guanosine-3'-pyrophosphohydrolase
1023	 64.57	0	1173292..1173672	+	126	58580773	yjgF	XOO1150	-	translation initiation inhibitor
1024	 66.11	0	1173693..1175846	+	717	58580774	recG	XOO1151	-	ATP-dependent DNA helicase
1025	 66.99	0	1175972..1176910	+	312	58580775	-	XOO1152	-	inosine-uridine preferring nucleoside hydrolase
1026	 54.73	-2	1176982..1177224	+	80	161899008	rpmE2	XOO1153	-	50S ribosomal protein L31 type B
1027	 60.95	0	1177399..1178727	+	442	58580777	gltA	XOO1154	-	type II citrate synthase
1028	 67.14	0	1179104..1179523	-	139	58580778	-	XOO1155	-	hypothetical protein
1029	 64.69	0	1180064..1182493	-	809	58580779	mrcA	XOO1156	-	penicillin-binding protein 1A
1030	 61.75	0	1182649..1183767	+	372	58580780	pilM	XOO1157	-	fimbrial assembly membrane protein
1031	 62.85	0	1183767..1184525	+	252	58580781	pilN	XOO1158	-	fimbrial assembly membrane protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.