IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
886	 59.47	-1	1026406..1026669	-	87	121632046	-	XOO4736	-	IS1404 transposase
887	 63.77	0	1026709..1026846	-	45	121632047	-	XOO4737	-	hypothetical protein
888	 64.57	0	1027764..1028384	-	206	58580625	-	XOO1002	-	pseudouridylate synthase
889	 63.10	0	1028697..1029650	+	317	58580626	-	XOO1003	-	transposase
890	 64.26	0	1029952..1031529	+	525	122879062	-	XOO1004	-	hypothetical protein
891	 54.81	-2	1031941..1032387	-	148	58580629	-	XOO1006	-	transposase
892	 62.46	0	1032418..1033416	+	332	58580630	-	XOO1007	-	ISxac1 transposase
893	 63.68	0	1033417..1033650	+	77	58580631	-	XOO1008	-	ISxac1 transposase
894	 62.56	0	1033655..1034896	+	413	58580632	-	XOO1009	-	putative ISXo8 transposase
895	 61.44	0	1035040..1035192	-	50	58580634	-	XOO1011	-	putative transposase
896	 59.92	-1	1036273..1036776	-	167	58580637	-	XOO1014	-	hypothetical protein
897	 61.32	0	1037283..1037525	-	80	58580638	glpQ	XOO1015	-	glycerophosphodiester phosphodiesterase
898	 56.97	-1	1037519..1037848	-	109	58580639	-	XOO1016	-	transposase
899	 54.59	-2	1037864..1038310	-	148	58580640	-	XOO1017	-	transposase
900	 62.60	0	1038316..1039053	-	245	58580641	glpQ	XOO1018	-	glycerophosphodiester phosphodiesterase
901	 61.11	0	1040016..1040897	+	293	58580643	-	XOO1020	-	putative ISXo8 transposase
902	 57.98	-1	1040867..1041223	+	118	58580644	-	XOO1021	-	putative transposase
903	 59.03	-1	1041189..1041620	+	143	58580645	-	XOO1022	-	putative transposase
904	 63.03	0	1041621..1042637	-	338	58580646	-	XOO1023	-	transposase
905	 65.38	0	1042850..1043857	+	335	161899010	icd	XOO1024	-	isocitrate dehydrogenase
906	 62.07	0	1044001..1044762	-	253	58580648	-	XOO1025	-	hypothetical protein
907	 58.33	-1	1045635..1045898	+	87	121632048	-	XOO4738	-	IS1404 transposase
908	 64.96	0	1046193..1046426	+	77	58580651	-	XOO1028	-	IS1404 transposase
909	 59.13	-1	1046396..1046740	+	114	58580652	-	XOO1029	-	IS1404 transposase
910	 60.48	0	1046884..1047093	+	69	58580653	-	XOO1030	-	DNA replication protein
911	 60.52	0	1047164..1047472	+	102	58580654	-	XOO1031	-	IS1478 transposase
912	 64.84	0	1047894..1049375	+	493	58580655	tig	XOO1032	-	trigger factor
913	 60.93	0	1049468..1050094	+	208	58580656	clpP	XOO1033	-	ATP-dependent Clp protease proteolytic subunit
914	 59.91	-1	1050219..1051505	+	428	58580657	clpX	XOO1034	-	ATP-dependent protease ATP-binding subunit
915	 62.44	0	1051568..1054120	+	850	58580658	lon	XOO1035	-	ATP-dependent serine proteinase La
916	 57.53	-1	1054169..1054606	+	145	58580659	hupB	XOO1036	-	histone-like protein
917	 62.92	0	1055381..1057408	+	675	58580660	ppiD	XOO1037	-	peptidyl-prolyl cis-trans isomerase
918	 65.15	0	1058121..1059305	-	394	58580661	dniR	XOO1038	-	murein hydrolase D
919	 61.07	0	1059296..1060063	-	255	122879063	gloB	XOO1039	-	hydroxyacylglutathione hydrolase
920	 68.95	+1	1060076..1060732	+	218	122879064	-	XOO1040	-	hypothetical protein
921	 64.46	0	1060760..1061212	+	150	58580664	rnhA	XOO1041	-	ribonuclease H
922	 63.13	0	1061221..1061955	+	244	58580665	dnaQ	XOO1042	-	DNA polymerase III subunit epsilon
923	 55.03	-2	1062444..1062890	-	148	58580667	-	XOO1044	-	transposase
924	 65.53	0	1063207..1063911	-	234	122879065	-	XOO1045	-	protein phosphatase
925	 61.23	0	1065884..1066159	+	91	58580669	-	XOO1046	-	site-specific DNA methylase
926	 64.91	0	1066288..1066458	+	56	121632049	-	XOO4739	-	hypothetical protein
927	 68.28	+1	1066854..1069577	+	907	58580670	-	XOO1047	-	Vgr-related protein
928	 64.38	0	1069519..1071795	+	758	58580671	-	XOO1048	-	hypothetical protein
929	 60.53	0	1071792..1073486	+	564	58580672	-	XOO1049	-	hypothetical protein
930	 63.58	0	1073806..1076010	+	734	58580673	-	XOO1050	-	hypothetical protein
931	 60.94	0	1076007..1077701	+	564	122879066	-	XOO1051	-	hypothetical protein
932	 62.37	0	1078023..1078580	+	185	58580675	-	XOO1052	-	hypothetical protein
933	 63.30	0	1078682..1079632	+	316	58580676	-	XOO1053	-	transposase
934	 60.85	0	1079731..1080486	-	251	58580677	-	XOO1054	-	integrase
935	 61.23	0	1080528..1080932	+	134	58580678	-	XOO1055	-	hypothetical protein
936	 67.24	0	1081143..1082192	-	349	58580679	opsX	XOO1056	-	saccharide biosynthesis regulatory protein
937	 65.60	0	1082213..1082962	+	249	58580680	-	XOO1057	-	3-deoxy-D-manno-octulosonic-acid kinase
938	 66.27	0	1082962..1083711	+	249	58580681	-	XOO1058	-	hypothetical protein
939	 65.50	0	1083711..1084742	+	343	58580682	moaA	XOO1059	-	molybdenum cofactor biosynthesis protein A
940	 63.33	0	1084760..1085119	+	119	58580683	-	XOO1060	-	hypothetical protein
941	 63.98	0	1085120..1085641	+	173	58580684	moaC	XOO1061	-	molybdenum cofactor biosynthesis protein C
942	 66.26	0	1085638..1085883	+	81	58580685	moaD	XOO1062	-	molybdopterin-converting factor chain 1
943	 64.65	0	1085880..1086326	+	148	58580686	moaE	XOO1063	-	molybdopterin-converting factor chain 2
944	 66.67	0	1086888..1088984	+	698	58580687	dnaX	XOO1064	-	DNA polymerase III subunits gamma and tau
945	 62.93	0	1088991..1089311	+	106	58580688	-	XOO1065	-	hypothetical protein
946	 66.84	0	1089409..1090002	+	197	58580689	recR	XOO1066	-	recombination protein RecR
947	 60.75	0	1089999..1090454	+	151	58580690	-	XOO1067	-	histidine triad protein homolog (HIT-like protein)
948	 66.10	0	1090574..1091107	-	177	58580691	slp	XOO1068	-	outer membrane protein Slp
949	 66.77	0	1091104..1093056	-	650	58580692	-	XOO1069	-	hypothetical protein
950	 67.61	+1	1093049..1094005	-	318	58580693	-	XOO1070	-	hypothetical protein
951	 65.61	0	1094011..1095051	-	346	58580694	moxR	XOO1071	-	methanol dehydrogenase regulator
952	 65.60	0	1094991..1096871	+	626	58580695	-	XOO1072	-	hypothetical protein
953	 64.18	0	1097865..1098065	+	66	58580697	arsC	XOO1074	-	arsenate reductase
954	 59.00	-1	1098264..1098902	+	212	58580698	def	XOO1075	-	peptide deformylase
955	 61.79	0	1099419..1100177	+	252	58580699	celS	XOO1076	-	cellulase S
956	 59.22	-1	1100605..1101396	+	263	122879067	-	XOO1077	-	cellulase S
957	 62.50	0	1102013..1103716	-	567	58580701	rhgB	XOO1078	-	rhamnogalacturonase B
958	 61.83	0	1103975..1104160	-	61	58580702	-	XOO1079	-	hypothetical protein
959	 59.85	-1	1104170..1104301	-	43	58580703	-	XOO1080	-	hypothetical protein
960	 55.07	-2	1105876..1106556	-	226	58580707	-	XOO1084	-	hypothetical protein
961	 59.95	-1	1106667..1107098	-	143	58580708	-	XOO1085	-	putative transposase
962	 61.96	0	1107111..1107641	-	176	58580709	-	XOO1086	-	putative transposase
963	 54.63	-2	1107693..1108124	-	143	58580710	-	XOO1087	-	hypothetical protein
964	 62.50	0	1108430..1109605	+	391	58580711	-	XOO1088	-	putative ISXo8 transposase
965	 58.68	-1	1109574..1109861	+	95	58580712	-	XOO1089	-	putative ISXo8 transposase
966	 66.24	0	1110572..1111498	-	308	58580713	-	XOO1090	-	glutaredoxin-like protein
967	 69.76	+1	1111559..1112335	+	258	122879068	nodB	XOO1091	-	acetylxylan esterase
968	 65.52	0	1112637..1113332	-	231	58580715	-	XOO1092	-	hypothetical protein
969	 64.95	0	1113631..1114272	-	213	58580716	-	XOO1093	-	hypothetical protein
970	 65.41	0	1114269..1115540	-	423