IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
852	 63.13	0	990772..991788	+	338	58580579	-	XOO0956	-	transposase
853	 63.13	0	991785..992123	-	112	58580580	-	XOO0957	-	H+ translocating pyrophosphate synthase
854	 63.43	0	992210..992734	+	174	58580581	-	XOO0958	-	hypothetical protein
855	 64.44	0	992878..993012	-	44	58580582	-	XOO0959	-	transposase
856	 63.31	0	993061..993894	-	277	58580583	-	XOO0960	-	transposase
857	 58.11	-1	993926..994264	-	112	58580584	-	XOO0961	-	putative ISXo8 transposase
858	 64.92	0	994415..995671	-	418	58580585	pfkA	XOO0962	-	6-phosphofructokinase
859	 63.83	0	995831..996394	+	187	58580586	adk	XOO0963	-	adenylate kinase
860	 66.00	0	996761..998119	+	452	122879059	mpl	XOO0964	-	UDP-N-acetylmuramate-L-alanine ligase
861	 65.17	0	998116..998715	+	199	58580588	-	XOO0965	-	hypothetical protein
862	 61.36	0	998862..999746	+	294	58580589	-	XOO0966	-	hypothetical protein
863	 61.69	0	1000502..1001164	-	220	58580591	-	XOO0968	-	putative transposase
864	 58.33	-1	1001130..1001501	-	123	58580592	-	XOO0969	-	putative transposase
865	 62.11	0	1001728..1002342	+	204	58580593	gst	XOO0970	-	glutathione S-transferase
866	 63.63	0	1002425..1003411	-	328	58580594	mdh	XOO0971	-	malate dehydrogenase
867	 65.66	0	1003527..1004021	-	164	58580595	ppiB	XOO0972	-	peptidyl-prolyl cis-trans isomerase
868	 62.40	0	1004266..1006095	+	609	58580596	typA	XOO0973	-	GTP-binding elongation factor protein
869	 67.14	0	1006165..1006584	+	139	58580597	-	XOO0974	-	hypothetical protein
870	 66.89	0	1006807..1007244	+	145	58580598	gatAX	XOO0975	-	Glu-tRNAGln amidotransferase A subunit
871	 63.92	0	1007507..1008634	-	375	122879060	-	XOO0976	-	membrane protein
872	 63.27	0	1008735..1010117	-	460	122879061	dhs1	XOO0977	-	family II 2-keto-3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
873	 62.19	0	1010365..1012488	+	707	58580601	cirA	XOO0978	-	colicin I receptor
874	 62.86	0	1013018..1013542	-	174	58580602	dsbB	XOO0979	-	disulfide bond formation protein B
875	 63.60	0	1013706..1014194	+	162	58580603	-	XOO0980	-	IS1478 transposase
876	 63.93	0	1014359..1015345	+	328	58580604	-	XOO0981	-	IS1404 transposase
877	 62.96	0	1015863..1017104	+	413	58580607	-	XOO0984	-	transposase
878	 61.59	0	1017101..1017691	+	196	58580608	-	XOO0985	-	IS1478 transposase
879	 59.20	-1	1017718..1018869	-	383	58580609	-	XOO0986	-	hypothetical protein
880	 60.81	0	1019093..1019587	-	164	58580610	-	XOO0987	-	IS1404 transposase
881	 61.84	0	1019668..1019874	-	68	58580611	-	XOO0988	-	IS1478 transposase
882	 62.73	0	1020045..1021010	-	321	58580612	-	XOO0989	-	transposase
883	 60.22	-1	1021090..1021539	+	149	58580613	tnpA	XOO0990	-	transposase
884	 60.63	0	1022028..1022375	-	115	121632045	-	XOO4735	-	IS1478 transposase
885	 63.43	0	1022406..1023641	-	411	58580615	-	XOO0992	-	transposase
886	 59.47	-1	1026406..1026669	-	87	121632046	-	XOO4736	-	IS1404 transposase
887	 63.77	0	1026709..1026846	-	45	121632047	-	XOO4737	-	hypothetical protein
888	 64.57	0	1027764..1028384	-	206	58580625	-	XOO1002	-	pseudouridylate synthase
889	 63.10	0	1028697..1029650	+	317	58580626	-	XOO1003	-	transposase
890	 64.26	0	1029952..1031529	+	525	122879062	-	XOO1004	-	hypothetical protein
891	 54.81	-2	1031941..1032387	-	148	58580629	-	XOO1006	-	transposase
892	 62.46	0	1032418..1033416	+	332	58580630	-	XOO1007	-	ISxac1 transposase
893	 63.68	0	1033417..1033650	+	77	58580631	-	XOO1008	-	ISxac1 transposase
894	 62.56	0	1033655..1034896	+	413	58580632	-	XOO1009	-	putative ISXo8 transposase
895	 61.44	0	1035040..1035192	-	50	58580634	-	XOO1011	-	putative transposase
896	 59.92	-1	1036273..1036776	-	167	58580637	-	XOO1014	-	hypothetical protein
897	 61.32	0	1037283..1037525	-	80	58580638	glpQ	XOO1015	-	glycerophosphodiester phosphodiesterase
898	 56.97	-1	1037519..1037848	-	109	58580639	-	XOO1016	-	transposase
899	 54.59	-2	1037864..1038310	-	148	58580640	-	XOO1017	-	transposase
900	 62.60	0	1038316..1039053	-	245	58580641	glpQ	XOO1018	-	glycerophosphodiester phosphodiesterase
901	 61.11	0	1040016..1040897	+	293	58580643	-	XOO1020	-	putative ISXo8 transposase
902	 57.98	-1	1040867..1041223	+	118	58580644	-	XOO1021	-	putative transposase
903	 59.03	-1	1041189..1041620	+	143	58580645	-	XOO1022	-	putative transposase
904	 63.03	0	1041621..1042637	-	338	58580646	-	XOO1023	-	transposase
905	 65.38	0	1042850..1043857	+	335	161899010	icd	XOO1024	-	isocitrate dehydrogenase
906	 62.07	0	1044001..1044762	-	253	58580648	-	XOO1025	-	hypothetical protein
907	 58.33	-1	1045635..1045898	+	87	121632048	-	XOO4738	-	IS1404 transposase
908	 64.96	0	1046193..1046426	+	77	58580651	-	XOO1028	-	IS1404 transposase
909	 59.13	-1	1046396..1046740	+	114	58580652	-	XOO1029	-	IS1404 transposase
910	 60.48	0	1046884..1047093	+	69	58580653	-	XOO1030	-	DNA replication protein
911	 60.52	0	1047164..1047472	+	102	58580654	-	XOO1031	-	IS1478 transposase
912	 64.84	0	1047894..1049375	+	493	58580655	tig	XOO1032	-	trigger factor
913	 60.93	0	1049468..1050094	+	208	58580656	clpP	XOO1033	-	ATP-dependent Clp protease proteolytic subunit
914	 59.91	-1	1050219..1051505	+	428	58580657	clpX	XOO1034	-	ATP-dependent protease ATP-binding subunit
915	 62.44	0	1051568..1054120	+	850	58580658	lon	XOO1035	-	ATP-dependent serine proteinase La
916	 57.53	-1	1054169..1054606	+	145	58580659	hupB	XOO1036	-	histone-like protein
917	 62.92	0	1055381..1057408	+	675	58580660	ppiD	XOO1037	-	peptidyl-prolyl cis-trans isomerase
918	 65.15	0	1058121..1059305	-	394	58580661	dniR	XOO1038	-	murein hydrolase D
919	 61.07	0	1059296..1060063	-	255	122879063	gloB	XOO1039	-	hydroxyacylglutathione hydrolase
920	 68.95	+1	1060076..1060732	+	218	122879064	-	XOO1040	-	hypothetical protein
921	 64.46	0	1060760..1061212	+	150	58580664	rnhA	XOO1041	-	ribonuclease H
922	 63.13	0	1061221..1061955	+	244	58580665	dnaQ	XOO1042	-	DNA polymerase III subunit epsilon
923	 55.03	-2	1062444..1062890	-	148	58580667	-	XOO1044	-	transposase
924	 65.53	0	1063207..1063911	-	234	122879065	-	XOO1045	-	protein phosphatase
925	 61.23	0	1065884..1066159	+	91	58580669	-	XOO1046	-	site-specific DNA methylase
926	 64.91	0	1066288..1066458	+	56	121632049	-	XOO4739	-	hypothetical protein
927	 68.28	+1	1066854..1069577	+	907	58580670	-	XOO1047	-	Vgr-related protein
928	 64.38	0	1069519..1071795	+	758	58580671	-	XOO1048	-	hypothetical protein
929	 60.53	0	1071792..1073486	+	564	58580672	-	XOO1049	-	hypothetical protein
930	 63.58	0	1073806..1076010	+	734	58580673	-	XOO1050	-	hypothetical protein
931	 60.94	0	1076007..1077701	+	564	122879066	-	XOO1051	-	hypothetical protein
932	 62.37	0	1078023..1078580	+	185	58580675	-	XOO1052	-	hypothetical protein
933	 63.30	0	1078682..1079632	+	316	58580676	-	XOO1053	-	transposase
934	 60.85	0	1079731..1080486	-	251	58580677	-	XOO1054	-	integrase
935	 61.23	0	1080528..1080932	+	134	58580678	-	XOO1055	-	hypothetical protein
936	 67.24	0	1081143..1082192	-	349	58580679	opsX	XOO1056	-	saccharide biosynthesis regulatory protein
937	 65.60	0	1082213..1082962	+	249	58580680	-	XOO1057	-	3-deoxy-D-manno-octulosonic-acid kinase
938	 66.27	0	1082962..1083711	+	249	58580681	-	XOO1058	-	hypothetical protein
939	 65.50	0	1083711..1084742	+	343	58580682	moaA	XOO1059	-	molybdenum cofactor biosynthesis protein A
940	 63.33	0	1084760..1085119	+	119	58580683	-	XOO1060	-	hypothetical protein
941	 63.98	0	1085120..1085641	+	173	58580684	moaC	XOO1061	-	molybdenum cofactor biosynthesis protein C
942	 66.26	0	1085638..1085883	+	81	58580685	moaD	XOO1062	-	molybdopterin-converting factor chain 1
943	 64.65	0	1085880..1086326	+	148	58580686	moaE	XOO1063	-	molybdopterin-converting factor chain 2
944	 66.67	0	1086888..1088984	+	698	58580687	dnaX	XOO1064	-	DNA polymerase III subunits gamma and tau
945	 62.93	0	1088991..1089311	+	106	58580688	-	XOO1065	-	hypothetical protein
946	 66.84	0	1089409..1090002	+	197	58580689	recR	XOO1066	-	recombination protein RecR
947	 60.75	0	1089999..1090454	+	151	58580690	-	XOO1067	-	histidine triad protein homolog (HIT-like protein)
948	 66.10	0	1090574..1091107	-	177	58580691	slp	XOO1068	-	outer membrane protein Slp
949	 66.77	0	1091104..1093056	-	650	58580692	-	XOO1069	-	hypothetical protein
950	 67.61	+1	1093049..1094005	-	318	58580693	-	XOO1070	-	hypothetical protein
951	 65.61	0	1094011..1095051	-	346	58580694	moxR	XOO1071	-	methanol dehydrogenase regulator
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.