IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
39	 63.84	0	44160..44336	+	58	58579667	-	XOO0044	-	hypothetical protein
40	 66.67	0	45395..45514	+	39	58579669	-	XOO0046	-	metalloprotease
41	 68.27	+1	45511..45822	+	103	58579670	-	XOO0047	-	hypothetical protein
42	 59.16	-1	46077..47102	-	341	58579671	tnpA	XOO0048	-	transposase
43	 63.46	0	47165..48223	-	352	58579672	-	XOO0049	-	putative transposase
44	 59.22	-1	48362..48643	+	93	58579673	-	XOO0050	-	hypothetical protein
45	 57.63	-1	48636..48956	+	106	58579674	-	XOO0051	-	hypothetical protein
46	 61.89	0	49347..50309	-	320	58579677	tnp	XOO0054	-	transposase
47	 62.91	0	50378..50803	+	141	58579678	-	XOO0055	-	hypothetical protein
48	 68.36	+1	51004..51891	+	295	58579679	sulA	XOO0056	-	cell division inhibitor
49	 69.50	+1	52197..52514	+	105	58579680	ygiY	XOO0057	-	two-component system sensor protein
50	 63.12	0	52974..53876	-	300	58579681	bpH1	XOO0058	-	histone H1-like protein
51	 65.41	0	54067..55503	+	478	122878980	htrA	XOO0059	-	protease DO
52	 66.17	0	55596..55994	+	132	58579683	-	XOO0060	-	hypothetical protein
53	 62.61	0	56139..56483	+	114	58579684	-	XOO0061	-	hypothetical protein
54	 63.02	0	56480..56863	+	127	58579685	-	XOO0062	-	hypothetical protein
55	 58.33	-1	57088..57459	+	123	58579686	-	XOO0063	-	putative transposase
56	 59.97	-1	57425..58021	+	198	58579687	-	XOO0064	-	putative transposase
57	 63.04	0	58273..59901	-	542	122878981	hpaF	XOO0065	-	HpaF
58	 58.64	-1	60777..63341	-	854	58579689	hrpF	XOO0066	-	HrpF protein
59	 63.65	0	65043..66038	+	331	58579692	-	XOO0069	-	putative ISXo8 transposase
60	 56.57	-2	66179..66505	+	108	58579693	-	XOO0070	-	putative ISXo8 transposase
61	 59.63	-1	66620..67102	-	160	58579694	-	XOO0071	-	putative transposase
62	 61.26	0	67104..67436	-	110	58579695	-	XOO0072	-	IS1479 transposase
63	 62.89	0	67300..67590	-	96	121632013	-	XOO4698	-	IS1479 transposase
64	 62.82	0	67740..68726	-	328	58579696	-	XOO0073	-	putative ISXo8 transposase
65	 62.99	0	68314..69075	-	253	121632014	-	XOO4699	-	transposase
66	 66.03	0	69423..69737	+	104	121632015	-	XOO4700	-	hypothetical protein
67	 62.59	0	69734..71719	+	661	58579697	-	XOO0074	-	hypothetical protein
68	 55.63	-2	72134..72604	-	156	58579698	hpaB	XOO0075	-	HpaB
69	 53.19	-2	72659..72940	-	93	58579699	hrpE	XOO0076	-	hypothetical protein
70	 60.49	0	73021..73263	-	80	58579700	hrpD6	XOO0077	-	HrpD6
71	 62.51	0	73273..74211	-	312	58579701	hrpD5	XOO0078	-	HrpD5
72	 63.29	0	74208..75035	-	275	58579702	hpaA	XOO0079	-	HpaA
73	 62.45	0	75032..75292	-	86	58579703	hrcS	XOO0080	-	hypothetical protein
74	 58.74	-1	75297..75977	-	226	58579704	hrcR	XOO0081	-	type III secretion system protein
75	 63.88	0	75928..76932	-	334	58579705	hrcQ	XOO0082	-	hypothetical protein
76	 64.19	0	76974..77618	-	214	58579706	hpaP	XOO0083	-	hrpC3
77	 61.51	0	77615..79552	-	645	58579707	hrcV	XOO0084	-	HrcV
78	 59.43	-1	79546..80817	-	423	58579708	hrcU	XOO0085	-	type III secretion system protein HrcU
79	 62.72	0	80840..81295	+	151	58579709	hrpB1	XOO0086	-	HrpB1
80	 61.11	0	81326..81721	+	131	58579710	hrpB2	XOO0087	-	HrpB2
81	 61.42	0	81723..82484	+	253	58579711	hrpB3	XOO0088	-	HrpB3
82	 67.14	0	82492..83121	+	209	58579712	hrpB4	XOO0089	-	HrpB4
83	 68.80	+1	83106..83807	+	233	58579713	hrpB5	XOO0090	-	type III secretion system protein HrpB
84	 65.54	0	83797..85125	+	442	58579714	hrcN	XOO0091	-	type III secretion system ATPase
85	 65.69	0	85118..85627	+	169	58579715	hrpB7	XOO0092	-	HrpB7
86	 61.49	0	85624..86454	+	276	58579716	hrpB8	XOO0093	-	HrpB8
87	 62.54	0	86537..88354	+	605	58579717	hrcC	XOO0094	-	hypothetical protein
88	 60.48	0	89093..89512	-	139	58579718	hpa1	XOO0095	-	Hpa1
89	 55.67	-2	89888..90451	+	187	58579719	hpa2	XOO0096	-	Hpa2
90	 61.90	0	90915..92468	-	517	58579720	-	XOO0097	-	hypothetical protein
91	 65.20	0	93566..93769	-	67	58579722	-	XOO0099	-	putative transposase
92	 63.29	0	94333..94539	-	68	58579725	-	XOO0102	-	putative transposase
93	 66.37	0	94683..95024	-	113	58579726	-	XOO0103	-	hypothetical protein
94	 64.30	0	95104..97767	+	887	58579727	-	XOO0104	-	hypothetical protein
95	 58.42	-1	97786..98076	-	96	58579728	-	XOO0105	-	hypothetical protein
96	 54.81	-2	98079..98525	+	148	58579729	-	XOO0106	-	transposase
97	 64.40	0	98876..100681	-	601	58579731	-	XOO0108	-	ABC transporter substrate binding protein
98	 65.71	0	100841..101782	+	313	122878982	-	XOO0109	-	hypothetical protein
99	 63.00	0	101975..103339	+	454	58579733	-	XOO0110	-	hypothetical protein
100	 66.91	0	103336..104964	-	542	58579734	-	XOO0111	-	hypothetical protein
101	 67.44	+1	105597..107021	+	474	122878983	glgA	XOO0112	-	glycogen synthase
102	 66.99	0	107066..109252	+	728	122878984	glgB2	XOO0113	-	glycogen branching enzyme
103	 65.76	0	109255..111012	+	585	58579737	-	XOO0114	-	maltooligosyltrehalose trehalohydrolase
104	 67.74	+1	111009..112958	+	649	122878985	malQ	XOO0115	-	4-alpha-glucanotransferase
105	 66.97	0	112955..115558	+	867	58579739	glgY	XOO0116	-	maltooligosyltrehalose synthase
106	 63.62	0	115881..118043	+	720	58579740	glgX	XOO0117	-	glycogen debranching enzyme
107	 65.35	0	118012..118692	+	226	58579741	-	XOO0118	-	hypothetical protein
108	 55.18	-2	119494..120555	-	353	58579742	mauG	XOO0119	-	methylamine utilization protein precursor
109	 63.48	0	120589..121812	-	407	58579743	-	XOO0120	-	ISxac1 transposase
110	 62.33	0	122018..123400	-	460	122878986	-	XOO0121	-	putative ISXo8 transposase
111	 63.23	0	123756..124772	-	338	58579745	-	XOO0122	-	transposase
112	 55.27	-2	124816..125631	+	271	58579746	-	XOO0123	-	Rhs family protein
113	 61.61	0	125619..126449	+	276	58579747	-	XOO0124	-	putative ISXo8 transposase
114	 59.06	-1	126436..126882	-	148	58579748	-	XOO0125	-	putative transposase
115	 58.10	-1	126879..127298	-	139	58579749	-	XOO0126	-	putative transposase
116	 61.74	0	127306..127731	+	141	58579750	-	XOO0127	-	putative ISXo8 transposase
117	 63.48	0	127747..128970	+	407	58579751	-	XOO0128	-	ISxac1 transposase
118	 57.92	-1	128975..129214	+	79	58579752	-	XOO0129	-	putative ISXo8 transposase
119	 67.05	0	130137..130397	+	86	121632016	-	XOO4701	-	hypothetical protein
120	 68.94	+1	131217..131348	-	43	121632017	-	XOO4702	-	hypothetical protein
121	 68.71	+1	131683..133101	+	472	58579753	-	XOO0130	-	hypothetical protein
122	 62.21	0	133389..133904	+	171	58579754	virK	XOO0131	-	VirK
123	 63.73	0	134107..134514	+	135	58579755	-	XOO0132	-	hypothetical protein
124	 68.68	+1	134954..136243	-	429	58579756	rhlE	XOO0133	-	ATP-dependent RNA helicase
125	 62.08	0	136862..137842	+	326	58579757	-	XOO0134	-	IS1479 transposase
126	 65.77	0	138869..139201	-	110	58579758	pdhB	XOO0135	-	dihydrolipoamide acyltransferase
127	 62.11	0	139191..139475	-	94	121632018	-	XOO4703	-	transposase
128	 63.36	0	139524..140219	-	231	58579759	-	XOO0136	-	transposase
129	 65.53	0	140247..140510	-	87	58579760	pdhB	XOO0137	-	dihydrolipoamide acyltransferase
130	 63.20	0	141969..142430	+	153	58579764	-	XOO0141	-	IS1478 transposase
131	 62.39	0	142669..143253	+	194	58579768	-	XOO0145	-	IS1478 transposase
132	 62.22	0	143287..143646	+	119	58579769	-	XOO0146	-	IS1478 transposase
133	 60.45	0	147325..148032	-	235	58579771	-	XOO0148	-	putative transposase
134	 62.89	0	148008..148298	-	96	58579772	-	XOO0149	-	IS1479 transposase
135	 62.16	0	148448..149245	-	265	58579773	-	XOO0150	-	putative ISXo8 transposase
136	 61.79	0	149387..149509	-	40	121632019	-	XOO4704	-	putative ISXo8 transposase
137	 52.58	-2	149537..150409	-	290	58579774	-	XOO0151	-	putative ISXo8 transposase
138	 62.64	0	150452..151420	-	322	58579775	-	XOO0152	-	transposase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.