IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
39	 63.84	0	44160..44336	+	58	58579667	-	XOO0044	-	hypothetical protein
40	 66.67	0	45395..45514	+	39	58579669	-	XOO0046	-	metalloprotease
41	 68.27	+1	45511..45822	+	103	58579670	-	XOO0047	-	hypothetical protein
42	 59.16	-1	46077..47102	-	341	58579671	tnpA	XOO0048	-	transposase
43	 63.46	0	47165..48223	-	352	58579672	-	XOO0049	-	putative transposase
44	 59.22	-1	48362..48643	+	93	58579673	-	XOO0050	-	hypothetical protein
45	 57.63	-1	48636..48956	+	106	58579674	-	XOO0051	-	hypothetical protein
46	 61.89	0	49347..50309	-	320	58579677	tnp	XOO0054	-	transposase
47	 62.91	0	50378..50803	+	141	58579678	-	XOO0055	-	hypothetical protein
48	 68.36	+1	51004..51891	+	295	58579679	sulA	XOO0056	-	cell division inhibitor
49	 69.50	+1	52197..52514	+	105	58579680	ygiY	XOO0057	-	two-component system sensor protein
50	 63.12	0	52974..53876	-	300	58579681	bpH1	XOO0058	-	histone H1-like protein
51	 65.41	0	54067..55503	+	478	122878980	htrA	XOO0059	-	protease DO
52	 66.17	0	55596..55994	+	132	58579683	-	XOO0060	-	hypothetical protein
53	 62.61	0	56139..56483	+	114	58579684	-	XOO0061	-	hypothetical protein
54	 63.02	0	56480..56863	+	127	58579685	-	XOO0062	-	hypothetical protein
55	 58.33	-1	57088..57459	+	123	58579686	-	XOO0063	-	putative transposase
56	 59.97	-1	57425..58021	+	198	58579687	-	XOO0064	-	putative transposase
57	 63.04	0	58273..59901	-	542	122878981	hpaF	XOO0065	-	HpaF
58	 58.64	-1	60777..63341	-	854	58579689	hrpF	XOO0066	-	HrpF protein
59	 63.65	0	65043..66038	+	331	58579692	-	XOO0069	-	putative ISXo8 transposase
60	 56.57	-2	66179..66505	+	108	58579693	-	XOO0070	-	putative ISXo8 transposase
61	 59.63	-1	66620..67102	-	160	58579694	-	XOO0071	-	putative transposase
62	 61.26	0	67104..67436	-	110	58579695	-	XOO0072	-	IS1479 transposase
63	 62.89	0	67300..67590	-	96	121632013	-	XOO4698	-	IS1479 transposase
64	 62.82	0	67740..68726	-	328	58579696	-	XOO0073	-	putative ISXo8 transposase
65	 62.99	0	68314..69075	-	253	121632014	-	XOO4699	-	transposase
66	 66.03	0	69423..69737	+	104	121632015	-	XOO4700	-	hypothetical protein
67	 62.59	0	69734..71719	+	661	58579697	-	XOO0074	-	hypothetical protein
68	 55.63	-2	72134..72604	-	156	58579698	hpaB	XOO0075	-	HpaB
69	 53.19	-2	72659..72940	-	93	58579699	hrpE	XOO0076	-	hypothetical protein
70	 60.49	0	73021..73263	-	80	58579700	hrpD6	XOO0077	-	HrpD6
71	 62.51	0	73273..74211	-	312	58579701	hrpD5	XOO0078	-	HrpD5
72	 63.29	0	74208..75035	-	275	58579702	hpaA	XOO0079	-	HpaA
73	 62.45	0	75032..75292	-	86	58579703	hrcS	XOO0080	-	hypothetical protein
74	 58.74	-1	75297..75977	-	226	58579704	hrcR	XOO0081	-	type III secretion system protein
75	 63.88	0	75928..76932	-	334	58579705	hrcQ	XOO0082	-	hypothetical protein
76	 64.19	0	76974..77618	-	214	58579706	hpaP	XOO0083	-	hrpC3
77	 61.51	0	77615..79552	-	645	58579707	hrcV	XOO0084	-	HrcV
78	 59.43	-1	79546..80817	-	423	58579708	hrcU	XOO0085	-	type III secretion system protein HrcU
79	 62.72	0	80840..81295	+	151	58579709	hrpB1	XOO0086	-	HrpB1
80	 61.11	0	81326..81721	+	131	58579710	hrpB2	XOO0087	-	HrpB2
81	 61.42	0	81723..82484	+	253	58579711	hrpB3	XOO0088	-	HrpB3
82	 67.14	0	82492..83121	+	209	58579712	hrpB4	XOO0089	-	HrpB4
83	 68.80	+1	83106..83807	+	233	58579713	hrpB5	XOO0090	-	type III secretion system protein HrpB
84	 65.54	0	83797..85125	+	442	58579714	hrcN	XOO0091	-	type III secretion system ATPase
85	 65.69	0	85118..85627	+	169	58579715	hrpB7	XOO0092	-	HrpB7
86	 61.49	0	85624..86454	+	276	58579716	hrpB8	XOO0093	-	HrpB8
87	 62.54	0	86537..88354	+	605	58579717	hrcC	XOO0094	-	hypothetical protein
88	 60.48	0	89093..89512	-	139	58579718	hpa1	XOO0095	-	Hpa1
89	 55.67	-2	89888..90451	+	187	58579719	hpa2	XOO0096	-	Hpa2
90	 61.90	0	90915..92468	-	517	58579720	-	XOO0097	-	hypothetical protein
91	 65.20	0	93566..93769	-	67	58579722	-	XOO0099	-	putative transposase
92	 63.29	0	94333..94539	-	68	58579725	-	XOO0102	-	putative transposase
93	 66.37	0	94683..95024	-	113	58579726	-	XOO0103	-	hypothetical protein
94	 64.30	0	95104..97767	+	887	58579727	-	XOO0104	-	hypothetical protein
95	 58.42	-1	97786..98076	-	96	58579728	-	XOO0105	-	hypothetical protein
96	 54.81	-2	98079..98525	+	148	58579729	-	XOO0106	-	transposase
97	 64.40	0	98876..100681	-	601	58579731	-	XOO0108	-	ABC transporter substrate binding protein
98	 65.71	0	100841..101782	+	313	122878982	-	XOO0109	-	hypothetical protein
99	 63.00	0	101975..103339	+	454	58579733	-	XOO0110	-	hypothetical protein
100	 66.91	0	103336..104964	-	542	58579734	-	XOO0111	-	hypothetical protein
101	 67.44	+1	105597..107021	+	474	122878983	glgA	XOO0112	-	glycogen synthase
102	 66.99	0	107066..109252	+	728	122878984	glgB2	XOO0113	-	glycogen branching enzyme
103	 65.76	0	109255..111012	+	585	58579737	-	XOO0114	-	maltooligosyltrehalose trehalohydrolase
104	 67.74	+1	111009..112958	+	649	122878985	malQ	XOO0115	-	4-alpha-glucanotransferase
105	 66.97	0	112955..115558	+	867	58579739	glgY	XOO0116	-	maltooligosyltrehalose synthase
106	 63.62	0	115881..118043	+	720	58579740	glgX	XOO0117	-	glycogen debranching enzyme
107	 65.35	0	118012..118692	+	226	58579741	-	XOO0118	-	hypothetical protein
108	 55.18	-2	119494..120555	-	353	58579742	mauG	XOO0119	-	methylamine utilization protein precursor
109	 63.48	0	120589..121812	-	407	58579743	-	XOO0120	-	ISxac1 transposase
110	 62.33	0	122018..123400	-	460	122878986	-	XOO0121	-	putative ISXo8 transposase
111	 63.23	0	123756..124772	-	338	58579745	-	XOO0122	-	transposase
112	 55.27	-2	124816..125631	+	271	58579746	-	XOO0123	-	Rhs family protein
113	 61.61	0	125619..126449	+	276	58579747	-	XOO0124	-	putative ISXo8 transposase
114	 59.06	-1	126436..126882	-	148	58579748	-	XOO0125	-	putative transposase
115	 58.10	-1	126879..127298	-	139	58579749	-	XOO0126	-	putative transposase
116	 61.74	0	127306..127731	+	141	58579750	-	XOO0127	-	putative ISXo8 transposase
117	 63.48	0	127747..128970	+	407	58579751	-	XOO0128	-	ISxac1 transposase
118	 57.92	-1	128975..129214	+	79	58579752	-	XOO0129	-	putative ISXo8 transposase
119	 67.05	0	130137..130397	+	86	121632016	-	XOO4701	-	hypothetical protein
120	 68.94	+1	131217..131348	-	43	121632017	-	XOO4702	-	hypothetical protein
121	 68.71	+1	131683..133101	+	472	58579753	-	XOO0130	-	hypothetical protein
122	 62.21	0	133389..133904	+	171	58579754	virK	XOO0131	-	VirK
123	 63.73	0	134107..134514	+	135	58579755	-	XOO0132	-	hypothetical protein
124	 68.68	+1	134954..136243	-	429	58579756	rhlE	XOO0133	-	ATP-dependent RNA helicase
125	 62.08	0	136862..137842	+	326	58579757</