IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
780	 61.03	0	903262..903456	+	64	121632042	rpmF	XOO4732	-	50S ribosomal protein L32
781	 62.37	0	903546..904523	+	325	161899014	fabH	XOO0878	-	3-oxoacyl-(acyl carrier protein) synthase III
782	 64.63	0	904753..905193	+	146	58580502	-	XOO0879	-	hypothetical protein
783	 69.84	+1	905471..906415	+	314	58580503	fabD	XOO0880	-	acyl-carrier-protein S-malonyltransferase
784	 65.27	0	906384..907241	+	285	58580504	fabG	XOO0881	-	3-ketoacyl-(acyl-carrier-protein) reductase
785	 56.67	-2	907446..907685	+	79	161899013	acpP	XOO0882	-	acyl carrier protein
786	 63.28	0	907764..909062	+	432	58580506	fabF	XOO0883	-	3-oxoacyl-(acyl carrier protein) synthase II
787	 68.81	+1	909233..910588	+	451	58580507	trpE	XOO0884	-	hypothetical protein
788	 68.16	+1	910649..911722	+	357	58580508	-	XOO0885	-	hypothetical protein
789	 68.54	+1	911719..912678	+	319	58580509	holB	XOO0886	-	DNA polymerase III subunit delta'
790	 63.28	0	912675..913028	+	117	58580510	pilZ	XOO0887	-	type IV fimbriae assembly protein
791	 59.49	-1	914984..915373	+	129	58580513	-	XOO0890	-	hypothetical protein
792	 65.37	0	915609..917384	-	591	58580514	prpR	XOO0891	-	propionate catabolism regulatory protein
793	 66.00	0	917353..918249	+	298	161899012	prpB	XOO0892	-	2-methylisocitrate lyase
794	 60.85	0	918310..919479	+	389	58580516	prpC	XOO0893	-	methylcitrate synthase
795	 63.31	0	919646..922237	+	863	122879053	acnA	XOO0894	-	aconitate hydratase
796	 67.39	+1	922560..922697	+	45	58580518	-	XOO0895	-	hypothetical protein
797	 65.83	0	922970..924169	+	399	58580519	-	XOO0896	-	hypothetical protein
798	 63.51	0	924669..926885	+	738	122879054	fyuA	XOO0897	-	TonB-dependent receptor
799	 66.86	0	926925..927962	+	345	58580521	-	XOO0898	-	inosine-uridine preferring nucleoside hydrolase
800	 59.56	-1	928072..928254	-	60	58580522	-	XOO0899	-	hypothetical protein
801	 64.32	0	928287..929009	+	240	58580523	-	XOO0900	-	hypothetical protein
802	 60.41	0	929234..932221	+	995	122879055	fecA	XOO0901	-	TonB-dependent receptor
803	 63.14	0	932522..933343	+	273	122879056	glpQ	XOO0902	-	glycerophosphodiester phosphodiesterase
804	 68.07	+1	933669..934382	+	237	58580526	-	XOO0903	-	hypothetical protein
805	 63.36	0	934342..935400	+	352	58580527	-	XOO0904	-	putative ISXo8 transposase
806	 58.77	-1	935541..935768	+	75	58580528	-	XOO0905	-	putative ISXo8 transposase
807	 59.39	-1	936060..937076	+	338	58580529	tnpA	XOO0906	-	transposase
808	 59.89	-1	937210..937770	-	186	58580530	-	XOO0907	-	bacterioferritin
809	 62.73	0	937813..938295	-	160	58580531	-	XOO0908	-	peroxiredoxin
810	 62.85	0	938359..938934	+	191	58580532	hspA	XOO0909	-	low molecular weight heat shock protein
811	 67.44	+1	939345..940244	+	299	58580533	cbpA	XOO0910	-	curved DNA binding protein
812	 58.40	-1	940484..940870	+	128	58580534	pilH	XOO0911	-	PilH family regulatory protein
813	 66.16	0	941449..942627	+	392	58580535	hflK	XOO0912	-	integral membrane protease subunit
814	 63.08	0	942627..943490	+	287	58580536	hflC	XOO0913	-	integral membrane proteinase subunit
815	 64.52	0	943784..943969	+	61	58580537	-	XOO0914	-	hypothetical protein
816	 65.51	0	944124..945599	+	491	58580538	purA	XOO0915	-	adenylosuccinate synthetase
817	 63.52	0	945925..948597	+	890	58580539	pepN	XOO0916	-	aminopeptidase N
818	 62.96	0	948791..949573	-	260	58580540	-	XOO0917	-	IS1595 transposase
819	 63.26	0	949684..950682	-	332	58580541	-	XOO0918	-	IS1478 transposase
820	 63.82	0	950689..951144	-	151	58580542	-	XOO0919	-	IS1478 transposase
821	 65.72	0	951304..951939	+	211	58580543	-	XOO0920	-	hypothetical protein
822	 63.93	0	951939..952376	+	145	58580544	msi147	XOO0921	-	hypothetical protein
823	 67.17	0	953225..953422	+	65	122879057	-	XOO0922	-	hypothetical protein
824	 69.85	+1	953447..954544	+	365	121632043	-	XOO4733	-	glycosyltransferase
825	 70.29	+1	953663..954544	+	293	58580546	-	XOO0923	-	glycosyltransferase
826	 66.67	0	954525..955859	+	444	58580547	-	XOO0924	-	membrane protein
827	 64.39	0	956093..957013	-	306	58580548	htrB	XOO0925	-	lipid A biosynthesis lauroyl acyltransferase
828	 65.00	0	957090..958406	+	438	58580549	kdtA	XOO0926	-	3-deoxy-D-manno-octulosonic-acid transferase
829	 62.46	0	958679..960058	-	459	58580550	tolC	XOO0927	-	hypothetical protein
830	 65.18	0	960079..960750	-	223	58580551	pcm	XOO0928	-	L-isoaspartate protein carboxylmethyltransferase
831	 64.53	0	960864..961517	-	217	58580552	-	XOO0929	-	transcriptional regulator
832	 67.45	+1	961737..962249	+	170	58580553	-	XOO0930	-	hypothetical protein
833	 64.49	0	962284..962421	+	45	58580554	-	XOO0931	-	hypothetical protein
834	 62.77	0	962418..963110	-	230	58580555	-	XOO0932	-	transposase
835	 63.10	0	962857..963417	-	186	121632044	-	XOO4734	-	transposase
836	 65.88	0	964377..965267	-	296	58580558	-	XOO0935	-	LysR family transcriptional regulator
837	 64.73	0	965382..966830	+	482	58580559	leuC	XOO0936	-	isopropylmalate isomerase large subunit
838	 60.80	0	966898..967545	+	215	161899011	leuD	XOO0937	-	isopropylmalate isomerase small subunit
839	 63.78	0	968362..969435	+	357	58580563	leuB	XOO0940	-	3-isopropylmalate dehydrogenase
840	 63.53	0	969766..971328	-	520	58580564	leuA	XOO0941	-	2-isopropylmalate synthase
841	 67.83	+1	972526..972783	-	85	58580567	ilvM	XOO0944	-	acetolactate synthase isozyme II small subunit
842	 65.80	0	972767..974488	-	573	58580568	ilvG	XOO0945	-	acetolactate synthase 2 catalytic subunit
843	 61.88	0	974532..975533	-	333	122879058	ilvC	XOO0946	-	ketol-acid reductoisomerase
844	 61.61	0	976967..978688	+	573	58580570	thiC	XOO0947	-	thiamine biosynthesis protein ThiC
845	 64.67	0	979063..981465	+	800	58580571	-	XOO0948	-	hypothetical protein
846	 61.66	0	981531..982469	+	312	58580572	-	XOO0949	-	transcriptional regulator
847	 61.14	0	982515..985484	+	989	58580573	btuB	XOO0950	-	TonB-dependent receptor
848	 66.06	0	986099..987247	-	382	58580574	-	XOO0951	-	response regulator
849	 61.64	0	987361..987897	-	178	58580575	ppa	XOO0952	-	inorganic pyrophosphatase
850	 66.17	0	987974..988576	+	200	58580576	-	XOO0953	-	hypothetical protein
851	 62.15	0	990185..990760	-	191	58580578	-	XOO0955	-	H+ translocating pyrophosphate synthase
852	 63.13	0	990772..991788	+	338	58580579	-	XOO0956	-	transposase
853	 63.13	0	991785..992123	-	112	58580580	-	XOO0957	-	H+ translocating pyrophosphate synthase
854	 63.43	0	992210..992734	+	174	58580581	-	XOO0958	-	hypothetical protein
855	 64.44	0	992878..993012	-	44	58580582	-	XOO0959	-	transposase
856	 63.31	0	993061..993894	-	277	58580583	-	XOO0960	-	transposase
857	 58.11	-1	993926..994264	-	112	58580584	-	XOO0961	-	putative ISXo8 transposase
858	 64.92	0	994415..995671	-	418	58580585	pfkA	XOO0962	-	6-phosphofructokinase
859	 63.83	0	995831..996394	+	187	58580586	adk	XOO0963	-	adenylate kinase
860	 66.00	0	996761..998119	+	452	122879059	mpl	XOO0964	-	UDP-N-acetylmuramate-L-alanine ligase
861	 65.17	0	998116..998715	+	199	58580588	-	XOO0965	-	hypothetical protein
862	 61.36	0	998862..999746	+	294	58580589	-	XOO0966	-	hypothetical protein
863	 61.69	0	1000502..1001164	-	220	58580591	-	XOO0968	-	putative transposase
864	 58.33	-1	1001130..1001501	-	123	58580592	-	XOO0969	-	putative transposase
865	 62.11	0	1001728..1002342	+	204	58580593	gst	XOO0970	-	glutathione S-transferase
866	 63.63	0	1002425..1003411	-	328	58580594	mdh	XOO0971	-	malate dehydrogenase
867	 65.66	0	1003527..1004021	-	164	58580595	ppiB	XOO0972	-	peptidyl-prolyl cis-trans isomerase
868	 62.40	0	1004266..1006095	+	609	58580596	typA	XOO0973	-	GTP-binding elongation factor protein
869	 67.14	0	1006165..1006584	+	139	58580597	-	XOO0974	-	hypothetical protein
870	 66.89	0	1006807..1007244	+	145	58580598	gatAX	XOO0975	-	Glu-tRNAGln amidotransferase A subunit
871	 63.92	0	1007507..1008634	-	375	122879060	-	XOO0976	-	membrane protein
872	 63.27	0	1008735..1010117	-	460	122879061	dhs1	XOO0977	-	family II 2-keto-3-deoxy-D-arabino-heptulosonate 7-phosphate synthase
873	 62.19	0	1010365..1012488	+	707	58580601	cirA	XOO0978	-	colicin I receptor
874	 62.86	0	1013018..1013542	-	174	58580602	dsbB	XOO0979	-	disulfide bond formation protein B
875	 63.60	0	1013706..1014194	+	162	58580603	-	XOO0980	-	IS1478 transposase
876	 63.93	0	1014359..1015345	+	328	58580604	-	XOO0981	-	IS1404 transposase
877	 62.96	0	1015863..1017104	+	413	58580607	-	XOO0984	-	transposase
878	 61.59	0	1017101..1017691	+	196	58580608	-	XOO0985	-	IS1478 transposase
879	 59.20	-1	1017718..1018869	-	383	58580609	-	XOO0986	-	hypothetical protein
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.