IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
726	 66.38	0	836609..838726	+	705	58580443	slt	XOO0820	-	soluble lytic murein transglycosylase
727	 57.06	-1	838993..840033	-	346	58580444	pel	XOO0821	-	pectate lyase
728	 63.45	0	840353..841564	-	403	58580445	-	XOO0822	-	putative ISXo8 transposase
729	 57.84	-1	841527..841979	+	150	58580446	-	XOO0823	-	putative transposase
730	 58.70	-1	841945..842421	+	158	58580447	-	XOO0824	-	putative transposase
731	 61.57	0	842458..843006	+	182	58580448	-	XOO0825	-	putative ISXo8 transposase
732	 54.60	-2	843073..843387	-	104	58580449	-	XOO0826	-	SAM-dependent methyltransferase
733	 63.53	0	843573..844559	-	328	58580450	-	XOO0827	-	IS1404 transposase
734	 58.73	-1	845155..845280	-	41	58580452	-	XOO0829	-	hypothetical protein
735	 67.59	+1	845302..845625	-	107	58580453	-	XOO0830	-	hypothetical protein
736	 62.11	0	845612..848554	-	980	58580454	valS	XOO0831	-	valyl-tRNA synthetase
737	 69.01	+1	848762..849187	-	141	58580455	holC	XOO0832	-	DNA polymerase III subunit chi
738	 68.63	+1	849228..849533	-	101	121632040	-	XOO4730	-	hypothetical protein
739	 68.91	+1	849533..851005	-	490	58580457	pepA	XOO0834	-	leucyl aminopeptidase
740	 64.40	0	852108..853298	+	396	58580459	-	XOO0836	-	hypothetical protein
741	 50.31	-2	853444..853602	+	52	58580460	-	XOO0837	-	hypothetical protein
742	 66.24	0	853713..854180	-	155	122879052	-	XOO0838	-	hypothetical protein
743	 68.31	+1	854607..855578	+	323	161899015	xerD	XOO0839	-	site-specific tyrosine recombinase XerD
744	 66.54	0	856033..856830	+	265	58580463	dsbC	XOO0840	-	disulfide isomerase
745	 67.58	+1	857229..861281	+	1350	58580464	purL	XOO0841	-	phosphoribosylformylglycinamidine synthase
746	 67.22	0	862259..866056	+	1265	58580465	xadA	XOO0842	-	outer membrane protein
747	 64.55	0	867084..867272	+	62	58580467	-	XOO0844	-	protease
748	 66.12	0	867613..868158	+	181	58580469	-	XOO0846	-	protease
749	 62.27	0	868333..870015	+	560	58580470	xpsE	XOO0847	-	general secretion pathway protein E
750	 63.88	0	870191..871408	+	405	58580471	xpsF	XOO0848	-	general secretion pathway protein F
751	 61.79	0	871616..872107	+	163	58580472	xpsG	XOO0849	-	general secretion pathway protein G
752	 68.24	+1	872117..872626	+	169	58580473	xpsH	XOO0850	-	general secretion pathway protein H
753	 64.75	0	872623..873039	+	138	58580474	xpsI	XOO0851	-	general secretion pathway protein I
754	 64.15	0	873036..873671	+	211	58580475	xpsJ	XOO0852	-	general secretion pathway protein J
755	 66.00	0	873614..874519	+	301	58580476	xpsK	XOO0853	-	general secretion pathway protein K
756	 66.40	0	874492..875637	+	381	58580477	xpsL	XOO0854	-	general secretion pathway protein L
757	 66.08	0	875591..876274	+	227	58580478	xpsM	XOO0855	-	general secretion pathway protein M
758	 68.87	+1	876264..877079	+	271	58580479	xpsN	XOO0856	-	general secretion pathway protein N
759	 62.43	0	877076..879388	+	770	58580480	xpsD	XOO0857	-	general secretion pathway protein D
760	 67.98	+1	879385..880224	+	279	58580481	-	XOO0858	-	hypothetical protein
761	 64.75	0	880648..881376	-	242	58580482	-	XOO0859	-	putative transcriptional regulator
762	 63.23	0	881482..882324	-	280	58580483	-	XOO0860	-	putative transporter
763	 65.08	0	882433..884634	-	733	58580484	bfrC	XOO0861	-	iron receptor
764	 67.16	0	884631..885845	-	404	58580485	-	XOO0862	-	hypothetical protein
765	 66.80	0	886474..887238	+	254	58580486	-	XOO0863	-	putative glycosyl transferase
766	 63.75	0	887280..888068	+	262	58580487	-	XOO0864	-	putative transposase
767	 66.67	0	888069..888167	-	32	121632041	-	XOO4731	-	transposase
768	 60.51	0	888318..888593	+	91	58580488	-	XOO0865	-	putative transposase
769	 59.79	-1	892705..892995	-	96	58580489	-	XOO0866	-	hypothetical protein
770	 66.11	0	893010..894083	-	357	58580490	-	XOO0867	-	hypothetical protein
771	 68.40	+1	894047..894679	-	210	58580491	-	XOO0868	-	endonuclease
772	 62.86	0	894699..895565	-	288	58580492	-	XOO0869	-	hypothetical protein
773	 63.69	0	895562..897406	-	614	58580493	-	XOO0870	-	hypothetical protein
774	 66.07	0	897403..898077	-	224	58580494	-	XOO0871	-	hypothetical protein
775	 63.70	0	898205..900496	-	763	58580495	-	XOO0872	-	hypothetical protein
776	 63.64	0	900621..901247	+	208	58580497	-	XOO0874	-	transposase
777	 62.06	0	901294..901575	+	93	58580498	-	XOO0875	-	transposase
778	 68.58	+1	901966..902541	-	191	58580499	maf	XOO0876	-	Maf-like protein
779	 59.91	-1	902513..903163	+	216	58580500	-	XOO0877	-	hypothetical protein
780	 61.03	0	903262..903456	+	64	121632042	rpmF	XOO4732	-	50S ribosomal protein L32
781	 62.37	0	903546..904523	+	325	161899014	fabH	XOO0878	-	3-oxoacyl-(acyl carrier protein) synthase III
782	 64.63	0	904753..905193	+	146	58580502	-	XOO0879	-	hypothetical protein
783	 69.84	+1	905471..906415	+	314	58580503	fabD	XOO0880	-	acyl-carrier-protein S-malonyltransferase
784	 65.27	0	906384..907241	+	285	58580504	fabG	XOO0881	-	3-ketoacyl-(acyl-carrier-protein) reductase
785	 56.67	-2	907446..907685	+	79	161899013	acpP	XOO0882	-	acyl carrier protein
786	 63.28	0	907764..909062	+	432	58580506	fabF	XOO0883	-	3-oxoacyl-(acyl carrier protein) synthase II
787	 68.81	+1	909233..910588	+	451	58580507	trpE	XOO0884	-	hypothetical protein
788	 68.16	+1	910649..911722	+	357	58580508	-	XOO0885	-	hypothetical protein
789	 68.54	+1	911719..912678	+	319	58580509	holB	XOO0886	-	DNA polymerase III subunit delta'
790	 63.28	0	912675..913028	+	117	58580510	pilZ	XOO0887	-	type IV fimbriae assembly protein
791	 59.49	-1	914984..915373	+	129	58580513	-	XOO0890	-	hypothetical protein
792	 65.37	0	915609..917384	-	591	58580514	prpR	XOO0891	-	propionate catabolism regulatory protein
793	 66.00	0	917353..918249	+	298	161899012	prpB	XOO0892	-	2-methylisocitrate lyase
794	 60.85	0	918310..919479	+	389	58580516	prpC	XOO0893	-	methylcitrate synthase
795	 63.31	0	919646..922237	+	863	122879053	acnA	XOO0894	-	aconitate hydratase
796	 67.39	+1	922560..922697	+	45	58580518	-	XOO0895	-	hypothetical protein
797	 65.83	0	922970..924169	+	399	58580519	-	XOO0896	-	hypothetical protein
798	 63.51	0	924669..926885	+	738	122879054	fyuA	XOO0897	-	TonB-dependent receptor
799	 66.86	0	926925..927962	+	345	58580521	-	XOO0898	-	inosine-uridine preferring nucleoside hydrolase
800	 59.56	-1	928072..928254	-	60	58580522	-	XOO0899	-	hypothetical protein
801	 64.32	0	928287..929009	+	240	58580523	-	XOO0900	-	hypothetical protein
802	 60.41	0	929234..932221	+	995	122879055	fecA	XOO0901	-	TonB-dependent receptor
803	 63.14	0	932522..933343	+	273	122879056	glpQ	XOO0902	-	glycerophosphodiester phosphodiesterase
804	 68.07	+1	933669..934382	+	237	58580526	-	XOO0903	-	hypothetical protein
805	 63.36	0	934342..935400	+	352	58580527	-	XOO0904	-	putative ISXo8 transposase
806	 58.77	-1	935541..935768	+	75	58580528	-	XOO0905	-	putative ISXo8 transposase
807	 59.39	-1	936060..937076	+	338	58580529	tnpA	XOO0906	-	transposase
808	 59.89	-1	937210..937770	-	186	58580530	-	XOO0907	-	bacterioferritin
809	 62.73	0	937813..938295	-	160	58580531	-	XOO0908	-	peroxiredoxin
810	 62.85	0	938359..938934	+	191	58580532	hspA	XOO0909	-	low molecular weight heat shock protein
811	 67.44	+1	939345..940244	+	299	58580533	cbpA	XOO0910	-	curved DNA binding protein
812	 58.40	-1	940484..940870	+	128	58580534	pilH	XOO0911	-	PilH family regulatory protein
813	 66.16	0	941449..942627	+	392	58580535	hflK	XOO0912	-	integral membrane protease subunit
814	 63.08	0	942627..943490	+	287	58580536	hflC	XOO0913	-	integral membrane proteinase subunit
815	 64.52	0	943784..943969	+	61	58580537	-	XOO0914	-	hypothetical protein
816	 65.51	0	944124..945599	+	491	58580538	purA	XOO0915	-	adenylosuccinate synthetase
817	 63.52	0	945925..948597	+	890	58580539	pepN	XOO0916	-	aminopeptidase N
818	 62.96	0	948791..949573	-	260	58580540	-	XOO0917	-	IS1595 transposase
819	 63.26	0	949684..950682	-	332	58580541	-	XOO0918	-	IS1478 transposase
820	 63.82	0	950689..951144	-	151	58580542	-	XOO0919	-	IS1478 transposase
821	 65.72	0	951304..951939	+	211	58580543	-	XOO0920	-	hypothetical protein
822	 63.93	0	951939..952376	+	145	58580544	msi147	XOO0921	-	hypothetical protein
823	 67.17	0	953225..953422	+	65	122879057	-	XOO0922	-	hypothetical protein
824	 69.85	+1	953447..954544	+	365	121632043	-	XOO4733	-	glycosyltransferase
825	 70.29	+1	953663..954544	+	293	58580546	-	XOO0923	-	glycosyltransferase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.