IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
685	 63.73	0	788727..789203	+	158	58580397	uptD	XOO0774	-	outer membran protein
686	 69.14	+1	789200..790090	+	296	58580398	uptE	XOO0775	-	outer membrane protein
687	 56.81	-2	790306..790650	+	114	58580399	-	XOO0776	-	hypothetical protein
688	 64.13	0	791039..792262	+	407	58580400	cysB	XOO0777	-	cystathionine beta-synthase
689	 64.82	0	792353..793546	+	397	58580401	metB	XOO0778	-	cystathionine gamma-lyase-like protein
690	 51.31	-2	793593..794393	+	266	58580402	smtA	XOO0779	-	hypothetical protein
691	 53.42	-2	795477..797462	+	661	58580403	-	XOO0780	-	putative glycosyltransferase
692	 49.66	-2	797764..798927	+	387	58580404	wxoC	XOO0781	-	putative glycosyl transferase
693	 45.11	-2	798933..799985	+	350	58580405	wxoD	XOO0782	-	putative o-antigen acetylase
694	 51.06	-2	801520..801660	+	46	58580409	-	XOO0786	-	IS1478 transposase
695	 61.19	0	801696..802901	+	401	122879047	tnpX1	XOO0787	-	IS1113 transposase
696	 61.48	0	802956..803321	+	121	58580411	-	XOO0788	-	IS1478 transposase
697	 51.29	-2	803431..804750	-	439	58580412	wzt	XOO0789	-	putative ATP binding protein
698	 64.23	0	805775..806716	-	313	58580413	etfA	XOO0790	-	electron transfer flavoprotein alpha subunit
699	 65.33	0	806716..807462	-	248	58580414	etfB	XOO0791	-	electron transfer flavoprotein beta subunit
700	 59.47	-1	807619..808743	+	374	58580415	rmlB	XOO0792	-	dTDP-glucose 4,6-dehydratase
701	 57.52	-1	808703..809686	+	327	58580416	rmlA	XOO0793	-	glucose-1-phosphate thymidylyltransferase
702	 60.57	0	809683..810240	+	185	58580417	rmlC	XOO0794	-	dTDP-4-dehydrorhamnose 3,5-epimerase
703	 63.92	0	810237..811145	+	302	58580418	rmlD	XOO0795	-	dTDP-4-dehydrorhamnose reductase
704	 61.82	0	811262..812665	-	467	58580419	xanB	XOO0796	-	phosphomannose isomerase; GDP-mannose pyrophosphorylase
705	 63.89	0	812712..814226	-	504	58580420	xanA	XOO0797	-	phosphoglucomutase; phosphomannomutase
706	 61.44	0	814159..814923	+	254	58580421	ipsI	XOO0798	-	IpsJ protein
707	 62.70	0	814923..815552	+	209	58580422	ipsJ	XOO0799	-	IpsJ protein
708	 59.23	-1	815610..817250	-	546	122879048	-	XOO0800	-	hypothetical protein
709	 64.26	0	817694..819394	-	566	58580424	etf-QO	XOO0801	-	flavoprotein-ubiquinone oxidoreductase
710	 65.52	0	819459..820067	+	202	58580425	alkB	XOO0802	-	DNA repair system specific for alkylated DNA
711	 64.96	0	820618..821262	-	214	58580426	-	XOO0803	-	hypothetical protein
712	 63.75	0	821259..822185	-	308	58580427	-	XOO0804	-	hypothetical protein
713	 67.14	0	822188..823030	-	280	58580428	yrbF	XOO0805	-	ABC transporter ATP-binding protein
714	 64.83	0	823116..824312	-	398	58580429	yrbE	XOO0806	-	ABC transporter permease
715	 63.97	0	824398..825657	+	419	58580430	-	XOO0807	-	hypothetical protein
716	 63.44	0	825719..826183	-	154	58580431	-	XOO0808	-	DNA-binding protein
717	 65.25	0	826323..828017	-	564	122879049	proS	XOO0809	-	prolyl-tRNA synthetase
718	 66.91	0	828129..828533	-	134	58580433	-	XOO0810	-	hypothetical protein
719	 64.38	0	828608..829438	+	276	58580434	pssA	XOO0811	-	phosphatidylserine synthase
720	 70.94	+2	829449..829916	+	155	121632039	-	XOO4729	-	hypothetical protein
721	 64.14	0	829922..830395	+	157	122879050	rimI	XOO0812	-	ribosomal-protein-alanine acetyltransferase
722	 55.75	-2	830813..831151	+	112	58580436	-	XOO0813	-	putative ISXo8 transposase
723	 63.48	0	831167..832390	+	407	58580437	-	XOO0814	-	ISxac1 transposase
724	 60.43	0	834011..834715	-	234	58580440	-	XOO0817	-	putative transposase
725	 61.98	0	835060..836511	-	483	122879051	-	XOO0818	-	putative ISXo8 transposase
726	 66.38	0	836609..838726	+	705	58580443	slt	XOO0820	-	soluble lytic murein transglycosylase
727	 57.06	-1	838993..840033	-	346	58580444	pel	XOO0821	-	pectate lyase
728	 63.45	0	840353..841564	-	403	58580445	-	XOO0822	-	putative ISXo8 transposase
729	 57.84	-1	841527..841979	+	150	58580446	-	XOO0823	-	putative transposase
730	 58.70	-1	841945..842421	+	158	58580447	-	XOO0824	-	putative transposase
731	 61.57	0	842458..843006	+	182	58580448	-	XOO0825	-	putative ISXo8 transposase
732	 54.60	-2	843073..843387	-	104	58580449	-	XOO0826	-	SAM-dependent methyltransferase
733	 63.53	0	843573..844559	-	328	58580450	-	XOO0827	-	IS1404 transposase
734	 58.73	-1	845155..845280	-	41	58580452	-	XOO0829	-	hypothetical protein
735	 67.59	+1	845302..845625	-	107	58580453	-	XOO0830	-	hypothetical protein
736	 62.11	0	845612..848554	-	980	58580454	valS	XOO0831	-	valyl-tRNA synthetase
737	 69.01	+1	848762..849187	-	141	58580455	holC	XOO0832	-	DNA polymerase III subunit chi
738	 68.63	+1	849228..849533	-	101	121632040	-	XOO4730	-	hypothetical protein
739	 68.91	+1	849533..851005	-	490	58580457	pepA	XOO0834	-	leucyl aminopeptidase
740	 64.40	0	852108..853298	+	396	58580459	-	XOO0836	-	hypothetical protein
741	 50.31	-2	853444..853602	+	52	58580460	-	XOO0837	-	hypothetical protein
742	 66.24	0	853713..854180	-	155	122879052	-	XOO0838	-	hypothetical protein
743	 68.31	+1	854607..855578	+	323	161899015	xerD	XOO0839	-	site-specific tyrosine recombinase XerD
744	 66.54	0	856033..856830	+	265	58580463	dsbC	XOO0840	-	disulfide isomerase
745	 67.58	+1	857229..861281	+	1350	58580464	purL	XOO0841	-	phosphoribosylformylglycinamidine synthase
746	 67.22	0	862259..866056	+	1265	58580465	xadA	XOO0842	-	outer membrane protein
747	 64.55	0	867084..867272	+	62	58580467	-	XOO0844	-	protease
748	 66.12	0	867613..868158	+	181	58580469	-	XOO0846	-	protease
749	 62.27	0	868333..870015	+	560	58580470	xpsE	XOO0847	-	general secretion pathway protein E
750	 63.88	0	870191..871408	+	405	58580471	xpsF	XOO0848	-	general secretion pathway protein F
751	 61.79	0	871616..872107	+	163	58580472	xpsG	XOO0849	-	general secretion pathway protein G
752	 68.24	+1	872117..872626	+	169	58580473	xpsH	XOO0850	-	general secretion pathway protein H
753	 64.75	0	872623..873039	+	138	58580474	xpsI	XOO0851	-	general secretion pathway protein I
754	 64.15	0	873036..873671	+	211	58580475	xpsJ	XOO0852	-	general secretion pathway protein J
755	 66.00	0	873614..874519	+	301	58580476	xpsK	XOO0853	-	general secretion pathway protein K
756	 66.40	0	874492..875637	+	381	58580477	xpsL	XOO0854	-	general secretion pathway protein L
757	 66.08	0	875591..876274	+	227	58580478	xpsM	XOO0855	-	general secretion pathway protein M
758	 68.87	+1	876264..877079	+	271	58580479	xpsN	XOO0856	-	general secretion pathway protein N
759	 62.43	0	877076..879388	+	770	58580480	xpsD	XOO0857	-	general secretion pathway protein D
760	 67.98	+1	879385..880224	+	279	58580481	-	XOO0858	-	hypothetical protein
761	 64.75	0	880648..881376	-	242	58580482	-	XOO0859	-	putative transcriptional regulator
762	 63.23	0	881482..882324	-	280	58580483	-	XOO0860	-	putative transporter
763	 65.08	0	882433..884634	-	733	58580484	bfrC	XOO0861	-	iron receptor
764	 67.16	0	884631..885845	-	404	58580485	-	XOO0862	-	hypothetical protein
765	 66.80	0	886474..887238	+	254	58580486	-	XOO0863	-	putative glycosyl transferase
766	 63.75	0	887280..888068	+	262	58580487	-	XOO0864	-	putative transposase
767	 66.67	0	888069..888167	-	32	121632041	-	XOO4731	-	transposase
768	 60.51	0	888318..888593	+	91	58580488	-	XOO0865	-	putative transposase
769	 59.79	-1	892705..892995	-	96	58580489	-	XOO0866	-	hypothetical protein
770	 66.11	0	893010..894083	-	357	58580490	-	XOO0867	-	hypothetical protein
771	 68.40	+1	894047..894679	-	210	58580491	-	XOO0868	-	endonuclease
772	 62.86	0	894699..895565	-	288	58580492	-	XOO0869	-	hypothetical protein
773	 63.69	0	895562..897406	-	614	58580493	-	XOO0870	-	hypothetical protein
774	 66.07	0	897403..898077	-	224	58580494	-	XOO0871	-	hypothetical protein
775	 63.70	0	898205..900496	-	763	58580495	-	XOO0872	-	hypothetical protein
776	 63.64	0	900621..901247	+	208	58580497	-	XOO0874	-	transposase
777	 62.06	0	901294..901575	+	93	58580498	-	XOO0875	-	transposase
778	 68.58	+1	901966..902541	-	191	58580499	maf	XOO0876	-	Maf-like protein
779	 59.91	-1	902513..903163	+	216	58580500	-	XOO0877	-	hypothetical protein
780	 61.03	0	903262..903456	+	64	121632042	rpmF	XOO4732	-	50S ribosomal protein L32
781	 62.37	0	903546..904523	+	325	161899014	fabH	XOO0878	-	3-oxoacyl-(acyl carrier protein) synthase III
782	 64.63	0	904753..905193	+	146	58580502	-	XOO0879	-	hypothetical protein
783	 69.84	+1	905471..906415	+	314	58580503	fabD	XOO0880	-	acyl-carrier-protein S-malonyltransferase
784	 65.27	0	906384..907241	+	285	58580504	fabG	XOO0881	-	3-ketoacyl-(acyl-carrier-protein) reductase
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.