IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
679	 58.11	-1	782534..782989	-	151	58580391	-	XOO0768	-	hypothetical protein
680	 62.53	0	783062..783520	-	152	58580392	ptps	XOO0769	-	6-pyruvoyl tetrahydrobiopterin synthase
681	 68.38	+1	783828..785282	-	484	58580393	rhlE	XOO0770	-	ATP-dependent RNA helicase
682	 66.16	0	785590..786579	+	329	122879046	uptA	XOO0771	-	fumarylacetoacetate hydrolase
683	 64.08	0	786515..787249	+	244	58580395	uptB	XOO0772	-	maleylacetoacetate isomerase
684	 62.11	0	787588..788727	-	379	58580396	uptC	XOO0773	-	type II secretion system protein-like protein
685	 63.73	0	788727..789203	+	158	58580397	uptD	XOO0774	-	outer membran protein
686	 69.14	+1	789200..790090	+	296	58580398	uptE	XOO0775	-	outer membrane protein
687	 56.81	-2	790306..790650	+	114	58580399	-	XOO0776	-	hypothetical protein
688	 64.13	0	791039..792262	+	407	58580400	cysB	XOO0777	-	cystathionine beta-synthase
689	 64.82	0	792353..793546	+	397	58580401	metB	XOO0778	-	cystathionine gamma-lyase-like protein
690	 51.31	-2	793593..794393	+	266	58580402	smtA	XOO0779	-	hypothetical protein
691	 53.42	-2	795477..797462	+	661	58580403	-	XOO0780	-	putative glycosyltransferase
692	 49.66	-2	797764..798927	+	387	58580404	wxoC	XOO0781	-	putative glycosyl transferase
693	 45.11	-2	798933..799985	+	350	58580405	wxoD	XOO0782	-	putative o-antigen acetylase
694	 51.06	-2	801520..801660	+	46	58580409	-	XOO0786	-	IS1478 transposase
695	 61.19	0	801696..802901	+	401	122879047	tnpX1	XOO0787	-	IS1113 transposase
696	 61.48	0	802956..803321	+	121	58580411	-	XOO0788	-	IS1478 transposase
697	 51.29	-2	803431..804750	-	439	58580412	wzt	XOO0789	-	putative ATP binding protein
698	 64.23	0	805775..806716	-	313	58580413	etfA	XOO0790	-	electron transfer flavoprotein alpha subunit
699	 65.33	0	806716..807462	-	248	58580414	etfB	XOO0791	-	electron transfer flavoprotein beta subunit
700	 59.47	-1	807619..808743	+	374	58580415	rmlB	XOO0792	-	dTDP-glucose 4,6-dehydratase
701	 57.52	-1	808703..809686	+	327	58580416	rmlA	XOO0793	-	glucose-1-phosphate thymidylyltransferase
702	 60.57	0	809683..810240	+	185	58580417	rmlC	XOO0794	-	dTDP-4-dehydrorhamnose 3,5-epimerase
703	 63.92	0	810237..811145	+	302	58580418	rmlD	XOO0795	-	dTDP-4-dehydrorhamnose reductase
704	 61.82	0	811262..812665	-	467	58580419	xanB	XOO0796	-	phosphomannose isomerase; GDP-mannose pyrophosphorylase
705	 63.89	0	812712..814226	-	504	58580420	xanA	XOO0797	-	phosphoglucomutase; phosphomannomutase
706	 61.44	0	814159..814923	+	254	58580421	ipsI	XOO0798	-	IpsJ protein
707	 62.70	0	814923..815552	+	209	58580422	ipsJ	XOO0799	-	IpsJ protein
708	 59.23	-1	815610..817250	-	546	122879048	-	XOO0800	-	hypothetical protein
709	 64.26	0	817694..819394	-	566	58580424	etf-QO	XOO0801	-	flavoprotein-ubiquinone oxidoreductase
710	 65.52	0	819459..820067	+	202	58580425	alkB	XOO0802	-	DNA repair system specific for alkylated DNA
711	 64.96	0	820618..821262	-	214	58580426	-	XOO0803	-	hypothetical protein
712	 63.75	0	821259..822185	-	308	58580427	-	XOO0804	-	hypothetical protein
713	 67.14	0	822188..823030	-	280	58580428	yrbF	XOO0805	-	ABC transporter ATP-binding protein
714	 64.83	0	823116..824312	-	398	58580429	yrbE	XOO0806	-	ABC transporter permease
715	 63.97	0	824398..825657	+	419	58580430	-	XOO0807	-	hypothetical protein
716	 63.44	0	825719..826183	-	154	58580431	-	XOO0808	-	DNA-binding protein
717	 65.25	0	826323..828017	-	564	122879049	proS	XOO0809	-	prolyl-tRNA synthetase
718	 66.91	0	828129..828533	-	134	58580433	-	XOO0810	-	hypothetical protein
719	 64.38	0	828608..829438	+	276	58580434	pssA	XOO0811	-	phosphatidylserine synthase
720	 70.94	+2	829449..829916	+	155	121632039	-	XOO4729	-	hypothetical protein
721	 64.14	0	829922..830395	+	157	122879050	rimI	XOO0812	-	ribosomal-protein-alanine acetyltransferase
722	 55.75	-2	830813..831151	+	112	58580436	-	XOO0813	-	putative ISXo8 transposase
723	 63.48	0	831167..832390	+	407	58580437	-	XOO0814	-	ISxac1 transposase
724	 60.43	0	834011..834715	-	234	58580440	-	XOO0817	-	putative transposase
725	 61.98	0	835060..836511	-	483	122879051	-	XOO0818	-	putative ISXo8 transposase
726	 66.38	0	836609..838726	+	705	58580443	slt	XOO0820	-	soluble lytic murein transglycosylase
727	 57.06	-1	838993..840033	-	346	58580444	pel	XOO0821	-	pectate lyase
728	 63.45	0	840353..841564	-	403	58580445	-	XOO0822	-	putative ISXo8 transposase
729	 57.84	-1	841527..841979	+	150	58580446	-	XOO0823	-	putative transposase
730	 58.70	-1	841945..842421	+	158	58580447	-	XOO0824	-	putative transposase
731	 61.57	0	842458..843006	+	182	58580448	-	XOO0825	-	putative ISXo8 transposase
732	 54.60	-2	843073..843387	-	104	58580449	-	XOO0826	-	SAM-dependent methyltransferase
733	 63.53	0	843573..844559	-	328	58580450	-	XOO0827	-	IS1404 transposase
734	 58.73	-1	845155..845280	-	41	58580452	-	XOO0829	-	hypothetical protein
735	 67.59	+1	845302..845625	-	107	58580453	-	XOO0830	-	hypothetical protein
736	 62.11	0	845612..848554	-	980	58580454	valS	XOO0831	-	valyl-tRNA synthetase
737	 69.01	+1	848762..849187	-	141	58580455	holC	XOO0832	-	DNA polymerase III subunit chi
738	 68.63	+1	849228..849533	-	101	121632040	-	XOO4730	-	hypothetical protein
739	 68.91	+1	849533..851005	-	490	58580457	pepA	XOO0834	-	leucyl aminopeptidase
740	 64.40	0	852108..853298	+	396	58580459	-	XOO0836	-	hypothetical protein
741	 50.31	-2	853444..853602	+	52	58580460	-	XOO0837	-	hypothetical protein
742	 66.24	0	853713..854180	-	155	122879052	-	XOO0838	-	hypothetical protein
743	 68.31	+1	854607..855578	+	323	161899015	xerD	XOO0839	-	site-specific tyrosine recombinase XerD
744	 66.54	0	856033..856830	+	265	58580463	dsbC	XOO0840	-	disulfide isomerase
745	 67.58	+1	857229..861281	+	1350	58580464	purL	XOO0841	-	phosphoribosylformylglycinamidine synthase
746	 67.22	0	862259..866056	+	1265	58580465	xadA	XOO0842	-	outer membrane protein
747	 64.55	0	867084..867272	+	62	58580467	-	XOO0844	-	protease
748	 66.12	0	867613..868158	+	181	58580469	-	XOO0846	-	protease
749	 62.27	0	868333..870015	+	560	58580470	xpsE	XOO0847	-	general secretion pathway protein E
750	 63.88	0	870191..871408	+	405	58580471	xpsF	XOO0848	-	general secretion pathway protein F
751	 61.79	0	871616..872107	+	163	58580472	xpsG	XOO0849	-	general secretion pathway protein G
752	 68.24	+1	872117..872626	+	169	58580473	xpsH	XOO0850	-	general secretion pathway protein H
753	 64.75	0	872623..873039	+	138	58580474	xpsI	XOO0851	-	general secretion pathway protein I
754	 64.15	0	873036..873671	+	211	58580475	xpsJ	XOO0852	-	general secretion pathway protein J
755	 66.00	0	873614..874519	+	301	58580476	xpsK	XOO0853	-	general secretion pathway protein K
756	 66.40	0	874492..875637	+	381	58580477	xpsL	XOO0854	-	general secretion pathway protein L
757	 66.08	0	875591..876274	+	227	58580478	xpsM	XOO0855	-	general secretion pathway protein M
758	 68.87	+1	876264..877079	+	271	58580479	xpsN	XOO0856	-	general secretion pathway protein N
759	 62.43	0	877076..879388	+	770	58580480	xpsD	XOO0857	-	general secretion pathway protein D
760	 67.98	+1	879385..880224	+	279	58580481	-	XOO0858	-	hypothetical protein
761	 64.75	0	880648..881376	-	242	58580482	-	XOO0859	-	putative transcriptional regulator
762	 63.23	0	881482..882324	-	280	<