IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
654	 56.62	-2	757305..757712	+	135	58580363	-	XOO0740	-	transposase
655	 60.87	0	758967..759242	+	91	58580366	-	XOO0743	-	hypothetical protein
656	 62.15	0	759214..759390	-	58	58580367	ycfV	XOO0744	-	ABC transporter ATP-binding protein
657	 68.25	+1	759448..760836	-	462	58580368	ybjY	XOO0745	-	ABC transporter permease
658	 64.08	0	760789..762756	+	655	58580369	glmS	XOO0746	-	D-fructose-6-phosphate amidotransferase
659	 65.19	0	763138..763611	+	157	58580370	-	XOO0747	-	hypothetical protein
660	 60.59	0	763843..764418	+	191	58580371	-	XOO0748	-	hypothetical protein
661	 52.50	-2	764424..764663	+	79	58580372	-	XOO0749	-	transposase
662	 61.30	0	764758..765726	-	322	121632038	-	XOO4728	-	putative transposase
663	 57.17	-1	765796..766374	+	192	122879044	-	XOO0752	-	transposase
664	 65.51	0	766487..767524	+	345	58580376	-	XOO0753	-	putative transposase
665	 61.65	0	767741..768298	-	185	58580377	gloA	XOO0754	-	lactoylglutathione lyase
666	 62.78	0	768422..769528	-	368	58580378	copB	XOO0755	-	copper resistance protein B precursor
667	 65.31	0	769525..771441	-	638	58580379	copA	XOO0756	-	copper resistance protein A precursor
668	 68.35	+1	771459..771875	-	138	58580380	-	XOO0757	-	hypothetical protein
669	 65.70	0	771981..773114	+	377	58580381	cysM	XOO0758	-	cysteine synthase
670	 64.02	0	773071..775182	+	703	58580382	prlC	XOO0759	-	oligopeptidase A
671	 70.31	+1	775326..776177	+	283	58580383	-	XOO0760	-	hypothetical protein
672	 66.00	0	776291..777499	-	402	58580384	fabB	XOO0761	-	beta-ketoacyl- synthase I
673	 62.89	0	777499..778080	-	193	58580385	fabA	XOO0762	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
674	 64.05	0	778330..779439	+	369	58580386	dinP	XOO0763	-	DNA polymerase IV
675	 63.89	0	779440..780231	+	263	58580387	gph	XOO0764	-	phosphoglycolate phosphatase
676	 66.42	0	780543..780941	-	132	122879045	-	XOO0765	-	hypothetical protein
677	 65.03	0	780938..781426	-	162	58580389	-	XOO0766	-	hypothetical protein
678	 68.44	+1	781685..782419	+	244	58580390	bioD	XOO0767	-	dithiobiotin synthetase
679	 58.11	-1	782534..782989	-	151	58580391	-	XOO0768	-	hypothetical protein
680	 62.53	0	783062..783520	-	152	58580392	ptps	XOO0769	-	6-pyruvoyl tetrahydrobiopterin synthase
681	 68.38	+1	783828..785282	-	484	58580393	rhlE	XOO0770	-	ATP-dependent RNA helicase
682	 66.16	0	785590..786579	+	329	122879046	uptA	XOO0771	-	fumarylacetoacetate hydrolase
683	 64.08	0	786515..787249	+	244	58580395	uptB	XOO0772	-	maleylacetoacetate isomerase
684	 62.11	0	787588..788727	-	379	58580396	uptC	XOO0773	-	type II secretion system protein-like protein
685	 63.73	0	788727..789203	+	158	58580397	uptD	XOO0774	-	outer membran protein
686	 69.14	+1	789200..790090	+	296	58580398	uptE	XOO0775	-	outer membrane protein
687	 56.81	-2	790306..790650	+	114	58580399	-	XOO0776	-	hypothetical protein
688	 64.13	0	791039..792262	+	407	58580400	cysB	XOO0777	-	cystathionine beta-synthase
689	 64.82	0	792353..793546	+	397	58580401	metB	XOO0778	-	cystathionine gamma-lyase-like protein
690	 51.31	-2	793593..794393	+	266	58580402	smtA	XOO0779	-	hypothetical protein
691	 53.42	-2	795477..797462	+	661	58580403	-	XOO0780	-	putative glycosyltransferase
692	 49.66	-2	797764..798927	+	387	58580404	wxoC	XOO0781	-	putative glycosyl transferase
693	 45.11	-2	798933..799985	+	350	58580405	wxoD	XOO0782	-	putative o-antigen acetylase
694	 51.06	-2	801520..801660	+	46	58580409	-	XOO0786	-	IS1478 transposase
695	 61.19	0	801696..802901	+	401	122879047	tnpX1	XOO0787	-	IS1113 transposase
696	 61.48	0	802956..803321	+	121	58580411	-	XOO0788	-	IS1478 transposase
697	 51.29	-2	803431..804750	-	439	58580412	wzt	XOO0789	-	putative ATP binding protein
698	 64.23	0	805775..806716	-	313	58580413	etfA	XOO0790	-	electron transfer flavoprotein alpha subunit
699	 65.33	0	806716..807462	-	248	58580414	etfB	XOO0791	-	electron transfer flavoprotein beta subunit
700	 59.47	-1	807619..808743	+	374	58580415	rmlB	XOO0792	-	dTDP-glucose 4,6-dehydratase
701	 57.52	-1	808703..809686	+	327	58580416	rmlA	XOO0793	-	glucose-1-phosphate thymidylyltransferase
702	 60.57	0	809683..810240	+	185	58580417	rmlC	XOO0794	-	dTDP-4-dehydrorhamnose 3,5-epimerase
703	 63.92	0	810237..811145	+	302	58580418	rmlD	XOO0795	-	dTDP-4-dehydrorhamnose reductase
704	 61.82	0	811262..812665	-	467	58580419	xanB	XOO0796	-	phosphomannose isomerase; GDP-mannose pyrophosphorylase
705	 63.89	0	812712..814226	-	504	58580420	xanA	XOO0797	-	phosphoglucomutase; phosphomannomutase
706	 61.44	0	814159..814923	+	254	58580421	ipsI	XOO0798	-	IpsJ protein
707	 62.70	0	814923..815552	+	209	58580422	ipsJ	XOO0799	-	IpsJ protein
708	 59.23	-1	815610..817250	-	546	122879048	-	XOO0800	-	hypothetical protein
709	 64.26	0	817694..819394	-	566	58580424	etf-QO	XOO0801	-	flavoprotein-ubiquinone oxidoreductase
710	 65.52	0	819459..820067	+	202	58580425	alkB	XOO0802	-	DNA repair system specific for alkylated DNA
711	 64.96	0	820618..821262	-	214	58580426	-	XOO0803	-	hypothetical protein
712	 63.75	0	821259..822185	-	308	58580427	-	XOO0804	-	hypothetical protein
713	 67.14	0	822188..823030	-	280	58580428	yrbF	XOO0805	-	ABC transporter ATP-binding protein
714	 64.83	0	823116..824312	-	398	58580429	yrbE	XOO0806	-	ABC transporter permease
715	 63.97	0	824398..825657	+	419	58580430	-	XOO0807	-	hypothetical protein
716	 63.44	0	825719..826183	-	154	58580431	-	XOO0808	-	DNA-binding protein
717	 65.25	0	826323..828017	-	564	122879049	proS	XOO0809	-	prolyl-tRNA synthetase
718	 66.91	0	828129..828533	-	134	58580433	-	XOO0810	-	hypothetical protein
719	 64.38	0	828608..829438	+	276	58580434	pssA	XOO0811	-	phosphatidylserine synthase
720	 70.94	+2	829449..829916	+	155	121632039	-	XOO4729	-	hypothetical protein
721	 64.14	0	829922..830395	+	157	122879050	rimI	XOO0812	-	ribosomal-protein-alanine acetyltransferase
722	 55.75	-2	830813..831151	+	112	58580436	-	XOO0813	-	putative ISXo8 transposase
723	 63.48	0	831167..832390	+	407	58580437	-	XOO0814	-	ISxac1 transposase
724	 60.43	0	834011..834715	-	234	58580440	-	XOO0817	-	putative transposase
725	 61.98	0	835060..836511	-	483	122879051	-	XOO0818	-	putative ISXo8 transposase
726	 66.38	0	836609..838726	+	705	58580443	slt	XOO0820	-	soluble lytic murein transglycosylase
727	 57.06	-1	838993..840033	-	346	58580444	pel	XOO0821	-	pectate lyase
728	 63.45	0	840353..841564	-	403	58580445	-	XOO0822	-	putative ISXo8 transposase
729	 57.84	-1	841527..841979	+	150	58580446	-	XOO0823	-	putative transposase
730	 58.70	-1	841945..842421	+	158	58580447	-	XOO0824	-	putative transposase
731	 61.57	0	842458..843006	+	182	58580448	-	XOO0825	-	putative ISXo8 transposase
732	 54.60	-2	843073..843387	-	104	58580449	-	XOO0826	-	SAM-dependent methyltransferase
733	 63.53	0	843573..844559	-	328	58580450	-	XOO0827	-	IS1404 transposase
734	 58.73	-1	845155..845280	-	41	58580452	-	XOO0829	-	hypothetical protein
735	 67.59	+1	845302..845625	-	107	58580453	-	XOO0830	-	hypothetical protein
736	 62.11	0	845612..848554	-	980	58580454	valS	XOO0831	-	valyl-tRNA synthetase
737	 69.01	+1	848762..849187	-	141	58580455	holC	XOO0832	-	DNA polymerase III subunit chi
738	 68.63	+1	849228..849533	-	101	121632040	-	XOO4730	-	hypothetical protein
739	 68.91	+1	849533..851005	-	490	58580457	pepA	XOO0834	-	leucyl aminopeptidase
740	 64.40	0	852108..853298	+	396	58580459	-	XOO0836	-	hypothetical protein
741	 50.31	-2	853444..853602	+	52	58580460	-	XOO0837	-	hypothetical protein
742	 66.24	0	853713..854180	-	155	122879052	-	XOO0838	-	hypothetical protein
743	 68.31	+1	854607..855578	+	323	161899015	xerD	XOO0839	-	site-specific tyrosine recombinase XerD
744	 66.54	0	856033..856830	+	265	58580463	dsbC	XOO0840	-	disulfide isomerase
745	 67.58	+1	857229..861281	+	1350	58580464	purL	XOO0841	-	phosphoribosylformylglycinamidine synthase
746	 67.22	0	862259..866056	+	1265	58580465	xadA	XOO0842	-	outer membrane protein
747	 64.55	0	867084..867272	+	62	58580467	-	XOO0844	-	protease
748	 66.12	0	867613..868158	+	181	58580469	-	XOO0846	-	protease
749	 62.27	0	868333..870015	+	560	58580470	xpsE	XOO0847	-	general secretion pathway protein E
750	 63.88	0	870191..871408	+	405	58580471	xpsF	XOO0848	-	general secretion pathway protein F
751	 61.79	0	871616..872107	+	163	58580472	xpsG	XOO0849	-	general secretion pathway protein G
752	 68.24	+1	872117..872626	+	169	58580473	xpsH	XOO0850	-	general secretion pathway protein H
753	 64.75	0	872623..873039	+	138	58580474	xpsI	XOO0851	-	general secretion pathway protein I
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.