IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
641	 65.68	0	745940..746242	+	100	58580350	atpE	XOO0727	-	F0F1 ATP synthase subunit C
642	 60.72	0	746357..746827	+	156	58580351	atpF	XOO0728	-	F0F1 ATP synthase subunit B
643	 67.99	+1	746831..747358	+	175	58580352	atpH	XOO0729	-	F0F1 ATP synthase subunit delta
644	 63.82	0	747406..748953	+	515	58580353	atpA	XOO0730	-	F0F1 ATP synthase subunit alpha
645	 61.23	0	749147..750010	+	287	58580354	atpG	XOO0731	-	F0F1 ATP synthase subunit gamma
646	 62.97	0	750155..751561	+	468	122879043	atpD	XOO0732	-	F0F1 ATP synthase subunit beta
647	 64.54	0	751705..752127	+	140	58580356	atpC	XOO0733	-	F0F1 ATP synthase subunit epsilon
648	 66.84	0	752359..752931	+	190	58580357	pheA	XOO0734	-	chorismate mutase
649	 64.84	0	753454..753837	-	127	58580358	-	XOO0735	-	hypothetical protein
650	 65.55	0	753820..755346	+	508	58580359	glmU	XOO0736	-	UDP-N-acetylglucosamine pyrophosphorylase
651	 62.67	0	755674..755823	-	49	58580360	styS	XOO0737	-	histidine kinase-response regulator hybrid protein
652	 52.70	-2	755854..756075	+	73	58580361	-	XOO0738	-	transposase
653	 62.83	0	756072..757088	-	338	58580362	-	XOO0739	-	transposase
654	 56.62	-2	757305..757712	+	135	58580363	-	XOO0740	-	transposase
655	 60.87	0	758967..759242	+	91	58580366	-	XOO0743	-	hypothetical protein
656	 62.15	0	759214..759390	-	58	58580367	ycfV	XOO0744	-	ABC transporter ATP-binding protein
657	 68.25	+1	759448..760836	-	462	58580368	ybjY	XOO0745	-	ABC transporter permease
658	 64.08	0	760789..762756	+	655	58580369	glmS	XOO0746	-	D-fructose-6-phosphate amidotransferase
659	 65.19	0	763138..763611	+	157	58580370	-	XOO0747	-	hypothetical protein
660	 60.59	0	763843..764418	+	191	58580371	-	XOO0748	-	hypothetical protein
661	 52.50	-2	764424..764663	+	79	58580372	-	XOO0749	-	transposase
662	 61.30	0	764758..765726	-	322	121632038	-	XOO4728	-	putative transposase
663	 57.17	-1	765796..766374	+	192	122879044	-	XOO0752	-	transposase
664	 65.51	0	766487..767524	+	345	58580376	-	XOO0753	-	putative transposase
665	 61.65	0	767741..768298	-	185	58580377	gloA	XOO0754	-	lactoylglutathione lyase
666	 62.78	0	768422..769528	-	368	58580378	copB	XOO0755	-	copper resistance protein B precursor
667	 65.31	0	769525..771441	-	638	58580379	copA	XOO0756	-	copper resistance protein A precursor
668	 68.35	+1	771459..771875	-	138	58580380	-	XOO0757	-	hypothetical protein
669	 65.70	0	771981..773114	+	377	58580381	cysM	XOO0758	-	cysteine synthase
670	 64.02	0	773071..775182	+	703	58580382	prlC	XOO0759	-	oligopeptidase A
671	 70.31	+1	775326..776177	+	283	58580383	-	XOO0760	-	hypothetical protein
672	 66.00	0	776291..777499	-	402	58580384	fabB	XOO0761	-	beta-ketoacyl- synthase I
673	 62.89	0	777499..778080	-	193	58580385	fabA	XOO0762	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
674	 64.05	0	778330..779439	+	369	58580386	dinP	XOO0763	-	DNA polymerase IV
675	 63.89	0	779440..780231	+	263	58580387	gph	XOO0764	-	phosphoglycolate phosphatase
676	 66.42	0	780543..780941	-	132	122879045	-	XOO0765	-	hypothetical protein
677	 65.03	0	780938..781426	-	162	58580389	-	XOO0766	-	hypothetical protein
678	 68.44	+1	781685..782419	+	244	58580390	bioD	XOO0767	-	dithiobiotin synthetase
679	 58.11	-1	782534..782989	-	151	58580391	-	XOO0768	-	hypothetical protein
680	 62.53	0	783062..783520	-	152	58580392	ptps	XOO0769	-	6-pyruvoyl tetrahydrobiopterin synthase
681	 68.38	+1	783828..785282	-	484	58580393	rhlE	XOO0770	-	ATP-dependent RNA helicase
682	 66.16	0	785590..786579	+	329	122879046	uptA	XOO0771	-	fumarylacetoacetate hydrolase
683	 64.08	0	786515..787249	+	244	58580395	uptB	XOO0772	-	maleylacetoacetate isomerase
684	 62.11	0	787588..788727	-	379	58580396	uptC	XOO0773	-	type II secretion system protein-like protein
685	 63.73	0	788727..789203	+	158	58580397	uptD	XOO0774	-	outer membran protein
686	 69.14	+1	789200..790090	+	296	58580398	uptE	XOO0775	-	outer membrane protein
687	 56.81	-2	790306..790650	+	114	58580399	-	XOO0776	-	hypothetical protein
688	 64.13	0	791039..792262	+	407	58580400	cysB	XOO0777	-	cystathionine beta-synthase
689	 64.82	0	792353..793546	+	397	58580401	metB	XOO0778	-	cystathionine gamma-lyase-like protein
690	 51.31	-2	793593..794393	+	266	58580402	smtA	XOO0779	-	hypothetical protein
691	 53.42	-2	795477..797462	+	661	58580403	-	XOO0780	-	putative glycosyltransferase
692	 49.66	-2	797764..798927	+	387	58580404	wxoC	XOO0781	-	putative glycosyl transferase
693	 45.11	-2	798933..799985	+	350	58580405	wxoD	XOO0782	-	putative o-antigen acetylase
694	 51.06	-2	801520..801660	+	46	58580409	-	XOO0786	-	IS1478 transposase
695	 61.19	0	801696..802901	+	401	122879047	tnpX1	XOO0787	-	IS1113 transposase
696	 61.48	0	802956..803321	+	121	58580411	-	XOO0788	-	IS1478 transposase
697	 51.29	-2	803431..804750	-	439	58580412	wzt	XOO0789	-	putative ATP binding protein
698	 64.23	0	805775..806716	-	313	58580413	etfA	XOO0790	-	electron transfer flavoprotein alpha subunit
699	 65.33	0	806716..807462	-	248	58580414	etfB	XOO0791	-	electron transfer flavoprotein beta subunit
700	 59.47	-1	807619..808743	+	374	58580415	rmlB	XOO0792	-	dTDP-glucose 4,6-dehydratase
701	 57.52	-1	808703..809686	+	327	58580416	rmlA	XOO0793	-	glucose-1-phosphate thymidylyltransferase
702	 60.57	0	809683..810240	+	185	58580417	rmlC	XOO0794	-	dTDP-4-dehydrorhamnose 3,5-epimerase
703	 63.92	0	810237..811145	+	302	58580418	rmlD	XOO0795	-	dTDP-4-dehydrorhamnose reductase
704	 61.82	0	811262..812665	-	467	58580419	xanB	XOO0796	-	phosphomannose isomerase; GDP-mannose pyrophosphorylase
705	 63.89	0	812712..814226	-	504	58580420	xanA	XOO0797	-	phosphoglucomutase; phosphomannomutase
706	 61.44	0	814159..814923	+	254	58580421	ipsI	XOO0798	-	IpsJ protein
707	 62.70	0	814923..815552	+	209	58580422	ipsJ	XOO0799	-	IpsJ protein
708	 59.23	-1	815610..817250	-	546	122879048	-	XOO0800	-	hypothetical protein
709	 64.26	0	817694..819394	-	566	58580424	etf-QO	XOO0801	-	flavoprotein-ubiquinone oxidoreductase
710	 65.52	0	819459..820067	+	202	58580425	alkB	XOO0802	-	DNA repair system specific for alkylated DNA
711	 64.96	0	820618..821262	-	214	58580426	-	XOO0803	-	hypothetical protein
712	 63.75	0	821259..822185	-	308	58580427	-	XOO0804	-	hypothetical protein
713	 67.14	0	822188..823030	-	280	58580428	yrbF	XOO0805	-	ABC transporter ATP-binding protein
714	 64.83	0	823116..824312	-	398	58580429	yrbE	XOO0806	-	ABC transporter permease
715	 63.97	0	824398..825657	+	419	58580430	-	XOO0807	-	hypothetical protein
716	 63.44	0	825719..826183	-	154	58580431	-	XOO0808	-	DNA-binding protein
717	 65.25	0	826323..828017	-	564	122879049	proS	XOO0809	-	prolyl-tRNA synthetase
718	 66.91	0	828129..828533	-	134	58580433	-	XOO0810	-	hypothetical protein
719	 64.38	0	828608..829438	+	276	58580434	pssA	XOO0811	-	phosphatidylserine synthase
720	 70.94	+2	829449..829916	+	155	121632039	-	XOO4729	-	hypothetical protein
721	 64.14	0	829922..830395	+	157	122879050	rimI	XOO0812	-	ribosomal-protein-alanine acetyltransferase
722	 55.75	-2	830813..831151	+	112	58580436	-	XOO0813	-	putative ISXo8 transposase
723	 63.48	0	831167..832390	+	407	58580437	-	XOO0814	-	ISxac1 transposase
724	 60.43	0	834011..834715	-	234