IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.81   STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
615	 63.82	0	718310..720346	+	678	58580321	-	XOO0698	-	sensor histidine kinase
616	 60.47	0	720801..721139	+	112	58580322	-	XOO0699	-	hypothetical protein
617	 63.90	0	721228..722565	+	445	58580323	sndH	XOO0700	-	L-sorbosone dehydrogenase
618	 60.94	0	723126..723509	-	127	58580324	-	XOO0701	-	hypothetical protein
619	 68.03	+1	723529..724626	+	365	58580325	rsmC	XOO0702	-	ribosomal RNA small subunit methyltransferase C
620	 63.87	0	724623..725336	+	237	58580326	rsuA	XOO0703	-	ribosomal small subunit pseudouridylate synthase
621	 67.84	+1	725333..726013	+	226	58580327	-	XOO0704	-	hypothetical protein
622	 67.08	0	726756..727235	-	159	58580329	-	XOO0706	-	oxidoreductase
623	 62.46	0	727378..728019	-	213	58580330	-	XOO0707	-	hypothetical protein
624	 68.40	+1	728097..728960	-	287	58580331	-	XOO0708	-	hypothetical protein
625	 58.85	-1	730684..731169	-	161	122879040	-	XOO0711	-	nucleotide-binding protein
626	 69.34	+1	731277..732173	+	298	58580335	-	XOO0712	-	hypothetical protein
627	 66.58	0	732097..733299	+	400	58580336	abc	XOO0713	-	ABC transporter ATP-binding protein
628	 68.68	+1	733296..733991	+	231	58580337	yaeE	XOO0714	-	ABC transporter permease
629	 61.92	0	734086..734886	+	266	58580338	-	XOO0715	-	outer membrane protein
630	 66.31	0	735263..735820	+	185	58580339	-	XOO0716	-	hypothetical protein
631	 63.90	0	736105..736791	-	228	58580340	ompW	XOO0717	-	outer membrane protein
632	 63.99	0	736933..737493	+	186	58580341	-	XOO0718	-	hypothetical protein
633	 65.48	0	737675..738433	+	252	122879041	-	XOO0719	-	hypothetical protein
634	 67.06	0	738563..740356	+	597	161899016	phdB	XOO0720	-	dihydrolipoamide acetyltransferase
635	 68.52	+1	740353..741000	+	215	58580344	-	XOO0721	-	hypothetical protein
636	 65.95	0	741017..742840	+	607	122879042	lpdA	XOO0722	-	dihydrolipoamide dehydrogenase
637	 68.38	+1	742902..743192	+	96	58580346	-	XOO0723	-	hypothetical protein
638	 61.62	0	743331..744143	-	270	58580347	-	XOO0724	-	hypothetical protein
639	 60.92	0	744607..745041	+	144	58580348	-	XOO0725	-	hypothetical protein
640	 59.80	-1	745067..745867	+	266	58580349	atpB	XOO0726	-	F0F1 ATP synthase subunit A
641	 65.68	0	745940..746242	+	100	58580350	atpE	XOO0727	-	F0F1 ATP synthase subunit C
642	 60.72	0	746357..746827	+	156	58580351	atpF	XOO0728	-	F0F1 ATP synthase subunit B
643	 67.99	+1	746831..747358	+	175	58580352	atpH	XOO0729	-	F0F1 ATP synthase subunit delta
644	 63.82	0	747406..748953	+	515	58580353	atpA	XOO0730	-	F0F1 ATP synthase subunit alpha
645	 61.23	0	749147..750010	+	287	58580354	atpG	XOO0731	-	F0F1 ATP synthase subunit gamma
646	 62.97	0	750155..751561	+	468	122879043	atpD	XOO0732	-	F0F1 ATP synthase subunit beta
647	 64.54	0	751705..752127	+	140	58580356	atpC	XOO0733	-	F0F1 ATP synthase subunit epsilon
648	 66.84	0	752359..752931	+	190	58580357	pheA	XOO0734	-	chorismate mutase
649	 64.84	0	753454..753837	-	127	58580358	-	XOO0735	-	hypothetical protein
650	 65.55	0	753820..755346	+	508	58580359	glmU	XOO0736	-	UDP-N-acetylglucosamine pyrophosphorylase
651	 62.67	0	755674..755823	-	49	58580360	styS	XOO0737	-	histidine kinase-response regulator hybrid protein
652	 52.70	-2	755854..756075	+	73	58580361	-	XOO0738	-	transposase
653	 62.83	0	756072..757088	-	338	58580362	-	XOO0739	-	transposase
654	 56.62	-2	757305..757712	+	135	58580363	-	XOO0740	-	transposase
655	 60.87	0	758967..759242	+	91	58580366	-	XOO0743	-	hypothetical protein
656	 62.15	0	759214..759390	-	58	58580367	ycfV	XOO0744	-	ABC transporter ATP-binding protein
657	 68.25	+1	759448..760836	-	462	58580368	ybjY	XOO0745	-	ABC transporter permease
658	 64.08	0	760789..762756	+	655	58580369	glmS	XOO0746	-	D-fructose-6-phosphate amidotransferase
659	 65.19	0	763138..763611	+	157	58580370	-	XOO0747	-	hypothetical protein
660	 60.59	0	763843..764418	+	191	58580371	-	XOO0748	-	hypothetical protein
661	 52.50	-2	764424..764663	+	79	58580372	-	XOO0749	-	transposase
662	 61.30	0	764758..765726	-	322	121632038	-	XOO4728	-	putative transposase
663	 57.17	-1	765796..766374	+	192	122879044	-	XOO0752	-	transposase
664	 65.51	0	766487..767524	+	345	58580376	-	XOO0753	-	putative transposase
665	 61.65	0	767741..768298	-	185	58580377	gloA	XOO0754	-	lactoylglutathione lyase
666	 62.78	0	768422..769528	-	368	58580378	copB	XOO0755	-	copper resistance protein B precursor
667	 65.31	0	769525..771441	-	638	58580379	copA	XOO0756	-	copper resistance protein A precursor
668	 68.35	+1	771459..771875	-	138	58580380	-	XOO0757	-	hypothetical protein
669	 65.70	0	771981..773114	+	377	58580381	cysM	XOO0758	-	cysteine synthase
670	 64.02	0	773071..775182	+	703	58580382	prlC	XOO0759	-	oligopeptidase A
671	 70.31	+1	775326..776177	+	283	58580383	-	XOO0760	-	hypothetical protein
672	 66.00	0	776291..777499	-	402	58580384	fabB	XOO0761	-	beta-ketoacyl- synthase I
673	 62.89	0	777499..778080	-	193	58580385	fabA	XOO0762	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
674	 64.05	0	778330..779439	+	369	58580386	dinP	XOO0763	-	DNA polymerase IV
675	 63.89	0	779440..780231	+	263	58580387	gph	XOO0764	-	phosphoglycolate phosphatase
676	 66.42	0	780543..780941	-	132	122879045	-	XOO0765	-	hypothetical protein
677	 65.03	0	780938..781426	-	162	58580389	-	XOO0766	-	hypothetical protein
678	 68.44	+1	781685..782419	+	244	58580390	bioD	XOO0767	-	dithiobiotin synthetase
679	 58.11	-1	782534..782989	-	151	58580391	-	XOO0768	-	hypothetical protein
680	 62.53	0	783062..783520	-	152	58580392	ptps	XOO0769	-	6-pyruvoyl tetrahydrobiopterin synthase
681	 68.38	+1	783828..785282	-	484	58580393	rhlE	XOO0770	-	ATP-dependent RNA helicase
682	 66.16	0	785590..786579	+	329	122879046	uptA	XOO0771	-	fumarylacetoacetate hydrolase
683	 64.08	0	786515..787249	+	244	58580395	uptB	XOO0772	-	maleylacetoacetate isomerase
684	 62.11	0	787588..788727	-	379	58580396	uptC	XOO0773	-	type II secretion system protein-like protein
685	 63.73	0	788727..789203	+	158	58580397	uptD	XOO0774	-	outer membran protein
686	 69.14	+1	789200..790090	+	296	58580398	uptE	XOO0775	-	outer membrane protein
687	 56.81	-2	790306..790650	+	114	58580399	-	XOO0776	-	hypothetical protein
688	 64.13	0	791039..792262	+	407	58580400	cysB	XOO0777	-	cystathionine beta-synthase
689	 64.82	0	792353..793546	+	397	58580401	metB	XOO0778	-	cystathionine gamma-lyase-like protein
690	 51.31	-2	793593..794393	+	266	58580402	smtA	XOO0779	-	hypothetical protein
691	 53.42	-2	795477..797462	+	661	58580403	-	XOO0780	-	putative glycosyltransferase
692	 49.66	-2	797764..798927	+	387	58580404	wxoC	XOO0781	-	putative glycosyl transferase
693	 45.11	-2	798933..799985	+	350	58580405	wxoD	XOO0782	-	putative o-antigen acetylase
694	 51.06	-2	801520..801660	+	46	58580409	-	XOO0786	-	IS1478 transposase
695	 61.19	0	801696..802901	+	401	122879047	tnpX1	XOO0787	-	IS1113 transposase
696	 61.48	0	802956..803321	+	121	58580411	-	XOO0788	-	IS1478 transposase
697	 51.29	-2	803431..804750	-	439	58580412	wzt	XOO0789	-	putative ATP binding protein
698	 64.23	0	805775..806716	-	313	58580413	etfA	XOO0790	-	electron transfer flavoprotein alpha subunit
699	 65.33	0	806716..807462	-	248	58580414	etfB	XOO0791	-	electron transfer flavoprotein beta subunit
700	 59.47	-1	807619..808743	+	374	58580415	rmlB	XOO0792	-	dTDP-glucose 4,6-dehydratase
701	 57.52	-1	808703..809686	+	327	58580416	rmlA	XOO0793	-	glucose-1-phosphate thymidylyltransferase
702	 60.57	0	809683..810240	+	185	58580417	rmlC	XOO0794	-	dTDP-4-dehydrorhamnose 3,5-epimerase
703	 63.92	0	810237..811145	+	302	58580418	rmlD	XOO0795	-	dTDP-4-dehydrorhamnose reductase
704	 61.82	0	811262..812665	-	467	58580419	xanB	XOO0796	-	phosphomannose isomerase; GDP-mannose pyrophosphorylase
705	 63.89	0	812712..814226	-	504	58580420	xanA	XOO0797	-	phosphoglucomutase; phosphomannomutase
706	 61.44	0	814159..814923	+	254	58580421	ipsI	XOO0798	-	IpsJ protein
707	 62.70	0	814923..815552	+	209	58580422	ipsJ	XOO0799	-	IpsJ protein
708	 59.23	-1	815610..817250	-	546	122879048	-	XOO0800	-	hypothetical protein
709	 64.26	0	817694..819394	-	566	58580424	etf-QO	XOO0801	-	flavoprotein-ubiquinone oxidoreductase
710	 65.52	0	819459..820067	+	202	58580425	alkB	XOO0802	-	DNA repair system specific for alkylated DNA
711	 64.96	0	820618..821262	-	214	58580426	-	XOO0803	-	hypothetical protein
712	 63.75	0	821259..822185	-	308	58580427	-	XOO0804	-	hypothetical protein
713	 67.14	0	822188..823030	-	280	58580428	yrbF	XOO0805	-	ABC transporter ATP-binding protein
714	 64.83	0	823116..824312	-	398	58580429	yrbE	XOO0806	-	ABC transporter permease
63.81	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.