IslandPathversion 1.0

IslandPath Analysis: Xanthomonas oryzae pv. oryzae KACC10331



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.81 STD DEV: 3.50
Xanthomonas oryzae pv. oryzae KACC10331, complete genome - 1..4941439
4144 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
594	 62.65	0	697279..698223	+	314	58580299	yadG	XOO0676	-	ABC transporter ATP-binding protein
595	 61.11	0	698226..698981	+	251	58580300	-	XOO0677	-	ABC-2 type transporter
596	 64.60	0	699396..699782	-	128	58580301	-	XOO0678	-	hypothetical protein
597	 63.25	0	699750..700364	+	204	58580302	-	XOO0679	-	hypothetical protein
598	 66.77	0	700493..702400	-	635	122879038	-	XOO0680	-	protease
599	 69.91	+1	702447..705530	-	1027	122879039	xadA	XOO0681	-	outer membrane protein
600	 65.46	0	705253..706995	+	580	58580305	cvgSY	XOO0682	-	histidine kinase/response regulator hybrid protein
601	 65.43	0	706977..707705	-	242	58580306	-	XOO0683	-	two-component response regulator
602	 67.02	0	707881..708165	-	94	121632037	-	XOO4727	-	hypothetical protein
603	 66.14	0	708174..708740	-	188	58580308	-	XOO0685	-	hypothetical protein
604	 65.43	0	709127..710260	-	377	58580310	motB	XOO0687	-	flagellar motor protein MotB
605	 61.99	0	710271..711125	-	284	58580311	motA	XOO0688	-	flagellar motor protein MotA
606	 64.58	0	711223..711462	-	79	58580312	-	XOO0689	-	hypothetical protein
607	 65.16	0	712020..712484	-	154	58580313	-	XOO0690	-	methionine sulfoxide reductase B
608	 70.78	+1	712753..713190	+	145	58580314	-	XOO0691	-	hypothetical protein
609	 63.12	0	713242..713721	-	159	58580315	lrp	XOO0692	-	leucine responsive regulatory protein
610	 67.98	+1	713870..715159	+	429	161899017	dadA	XOO0693	-	D-amino acid dehydrogenase small subunit
611	 68.30	+1	715159..716259	+	366	58580317	alr	XOO0694	-	alanine racemase
612	 65.78	0	716662..717336	-	224	58580318	-	XOO0695	-	hypothetical protein
613	 63.25	0	717431..717928	+	165	58580319	-	XOO0696	-	hypothetical protein
614	 65.15	0	717894..718223	+	109	58580320	-	XOO0697	-	hypothetical protein
615	 63.82	0	718310..720346	+	678	58580321	-	XOO0698	-	sensor histidine kinase
616	 60.47	0	720801..721139	+	112	58580322	-	XOO0699	-	hypothetical protein
617	 63.90	0	721228..722565	+	445	58580323	sndH	XOO0700	-	L-sorbosone dehydrogenase
618	 60.94	0	723126..723509	-	127	58580324	-	XOO0701	-	hypothetical protein
619	 68.03	+1	723529..724626	+	365	58580325	rsmC	XOO0702	-	ribosomal RNA small subunit methyltransferase C
620	 63.87	0	724623..725336	+	237	58580326	rsuA	XOO0703	-	ribosomal small subunit pseudouridylate synthase
621	 67.84	+1	725333..726013	+	226	58580327	-	XOO0704	-	hypothetical protein
622	 67.08	0	726756..727235	-	159	58580329	-	XOO0706	-	oxidoreductase
623	 62.46	0	727378..728019	-	213	58580330	-	XOO0707	-	hypothetical protein
624	 68.40	+1	728097..728960	-	287	58580331	-	XOO0708	-	hypothetical protein
625	 58.85	-1	730684..731169	-	161	122879040	-	XOO0711	-	nucleotide-binding protein
626	 69.34	+1	731277..732173	+	298	58580335	-	XOO0712	-	hypothetical protein
627	 66.58	0	732097..733299	+	400	58580336	abc	XOO0713	-	ABC transporter ATP-binding protein
628	 68.68	+1	733296..733991	+	231	58580337	yaeE	XOO0714	-	ABC transporter permease
629	 61.92	0	734086..734886	+	266	58580338	-	XOO0715	-	outer membrane protein
630	 66.31	0	735263..735820	+	185	58580339	-	XOO0716	-	hypothetical protein
631	 63.90	0	736105..736791	-	228	58580340	ompW	XOO0717	-	outer membrane protein
632	 63.99	0	736933..737493	+	186	58580341	-	XOO0718	-	hypothetical protein
633	 65.48	0	737675..738433	+	252	122879041	-	XOO0719	-	hypothetical protein
634	 67.06	0	738563..740356	+	597	161899016	phdB	XOO0720	-	dihydrolipoamide acetyltransferase
635	 68.52	+1	740353..741000	+	215	58580344	-	XOO0721	-	hypothetical protein
636	 65.95	0	741017..742840	+	607	122879042	lpdA	XOO0722	-	dihydrolipoamide dehydrogenase
637	 68.38	+1	742902..743192	+	96	58580346	-	XOO0723	-	hypothetical protein
638	 61.62	0	743331..744143	-	270	58580347	-	XOO0724	-	hypothetical protein
639	 60.92	0	744607..745041	+	144	58580348	-	XOO0725	-	hypothetical protein
640	 59.80	-1	745067..745867	+	266	58580349	atpB	XOO0726	-	F0F1 ATP synthase subunit A
641	 65.68	0	745940..746242	+	100	58580350	atpE	XOO0727	-	F0F1 ATP synthase subunit C
642	 60.72	0	746357..746827	+	156	58580351	atpF	XOO0728	-	F0F1 ATP synthase subunit B
643	 67.99	+1	746831..747358	+	175	58580352	atpH	XOO0729	-	F0F1 ATP synthase subunit delta
644	 63.82	0	747406..748953	+	515	58580353	atpA	XOO0730	-	F0F1 ATP synthase subunit alpha
645	 61.23	0	749147..750010	+	287	58580354	atpG	XOO0731	-	F0F1 ATP synthase subunit gamma
646	 62.97	0	750155..751561	+	468	122879043	atpD	XOO0732	-	F0F1 ATP synthase subunit beta
647	 64.54	0	751705..752127	+	140	58580356	atpC	XOO0733	-	F0F1 ATP synthase subunit epsilon
648	 66.84	0	752359..752931	+	190	58580357	pheA	XOO0734	-	chorismate mutase
649	 64.84	0	753454..753837	-	127	58580358	-	XOO0735	-	hypothetical protein
650	 65.55	0	753820..755346	+	508	58580359	glmU	XOO0736	-	UDP-N-acetylglucosamine pyrophosphorylase
651	 62.67	0	755674..755823	-	49	58580360	styS	XOO0737	-	histidine kinase-response regulator hybrid protein
652	 52.70	-2	755854..756075	+	73	58580361	-	XOO0738	-	transposase
653	 62.83	0	756072..757088	-	338	58580362	-	XOO0739	-	transposase
654	 56.62	-2	757305..757712	+	135	58580363	-	XOO0740	-	transposase
655	 60.87	0	758967..759242	+	91	58580366	-	XOO0743	-	hypothetical protein
656	 62.15	0	759214..759390	-	58	58580367	ycfV	XOO0744	-	ABC transporter ATP-binding protein
657	 68.25	+1	759448..760836	-	462	58580368	ybjY	XOO0745	-	ABC transporter permease
658	 64.08	0	760789..762756	+	655	58580369	glmS	XOO0746	-	D-fructose-6-phosphate amidotransferase
659	 65.19	0	763138..763611	+	157	58580370	-	XOO0747	-	hypothetical protein
660	 60.59	0	763843..764418	+	191	58580371	-	XOO0748	-	hypothetical protein
661	 52.50	-2	764424..764663	+	79	58580372	-	XOO0749	-	transposase
662	 61.30	0	764758..765726	-	322	121632038	-	XOO4728	-	putative transposase
663	 57.17	-1	765796..766374	+	192	122879044	-	XOO0752	-	transposase
664	 65.51	0	766487..767524	+	345	58580376	-	XOO0753	-	putative transposase
665	 61.65	0	767741..768298	-	185	58580377	gloA	XOO0754	-	lactoylglutathione lyase
666	 62.78	0	768422..769528	-	368	58580378	copB	XOO0755	-	copper resistance protein B precursor
667	 65.31	0	769525..771441	-	638	58580379	copA	XOO0756	-	copper resistance protein A precursor
668	 68.35	+1	771459..771875	-	138	58580380	-	XOO0757	-	hypothetical protein
669	 65.70	0	771981..773114	+	377	58580381	cysM	XOO0758	-	cysteine synthase
670	 64.02	0	773071..775182	+	703	58580382	prlC	XOO0759	-	oligopeptidase A
671	 70.31	+1	775326..776177	+	283	58580383	-	XOO0760	-	hypothetical protein
672	 66.00	0	776291..777499	-	402	58580384	fabB	XOO0761	-	beta-ketoacyl- synthase I
673	 62.89	0	777499..778080	-	193	58580385	fabA	XOO0762	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
674	 64.05	0	778330..779439	+	369	58580386	dinP	XOO0763	-	DNA polymerase IV
675	 63.89	0	779440..780231	+	263	58580387	gph	XOO0764	-	phosphoglycolate phosphatase
676	 66.42	0	780543..780941	-	132	122879045	-	XOO0765	-	hypothetical protein
677	 65.03	0	780938..781426	-	162	58580389	-	XOO0766	-	hypothetical protein
678	 68.44	+1